Sankaran, Banumathi

Robust deep learning–based protein sequence design using ProteinMPNN

Dauparas, J., Anishchenko, I., Bennett, N., Bai, H., Ragotte, R. J., Milles, L. F., Wicky, B. I. M., Courbet, A., de Haas, R. J., Bethel, N., et al. (2022) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 2,210

Robust deep learning based protein sequence design using ProteinMPNN

Dauparas, J., Anishchenko, I., Bennett, N., Bai, H., Ragotte, R. J., Milles, L. F., Wicky, B. I. M., Courbet, A., de Haas, R. J., Bethel, N., et al. (2022) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 2,107

A conserved PLPLRT/SD motif of STING mediates the recruitment and activation of TBK1

Zhao, B., Du, F., Xu, P., Shu, C., Sankaran, B., Bell, S. L., Liu, M., Lei, Y., Gao, X., Fu, X., et al. (2019) · Nature

interferon and immune responsesImmune Response and Inflammation

Cited by 447

De novo design of a fluorescence-activating β-barrel

Dou, J., Vorobieva, A. A., Sheffler, W., Doyle, L. A., Park, H., Bick, M. J., Mao, B., Foight, G. W., Lee, M. Y., Gagnon, L. A., et al. (2018) · Nature

Protein Structure and DynamicsBiochemical and Structural Characterization

Cited by 351

Improving protein expression, stability, and function with ProteinMPNN

Sumida, K. H., Núñez-Franco, R., Kalvet, I., Pellock, S. J., Wicky, B. I. M., Milles, L. F., Dauparas, J., Wang, J., Kipnis, Y., Jameson, N., et al. (2023) · Journal of the American Chemical Society

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 344

Computational design of serine hydrolases

Lauko, A., Pellock, S. J., Sumida, K. H., Anishchenko, I., Juergens, D., Ahern, W., Jeung, J., Shida, A. F., Hunt, A., Kalvet, I., et al. (2025) · Science

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 235

Design of stimulus-responsive two-state hinge proteins

Praetorius, F., Leung, P. J. Y., Tessmer, M. H., Broerman, A., Demakis, C., Dishman, A. F., Pillai, A., Idris, A., Juergens, D., Dauparas, J., et al. (2023) · Science

Protein Structure and DynamicsBiochemical and Structural Characterization

Cited by 90

Design of stimulus-responsive two-state hinge proteins

Praetorius, F., Leung, P. J. Y., Tessmer, M. H., Broerman, A., Demakis, C., Dishman, A. F., Pillai, A., Idris, A., Juergens, D., Dauparas, J., et al. (2023) · Science

Protein Structure and DynamicsBiochemical and Structural Characterization

Cited by 90

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

de Haas, R. J., Brunette, N., Goodson, A., Dauparas, J., Yi, S. Y., Yang, E. C., Dowling, Q., Nguyen, H., Kang, A., Bera, A. K., et al. (2024) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsBiochemical and Structural Characterization

Cited by 42

Rapid and automated design of two-component protein nanomaterials using ProteinMPNN

de Haas, R. J., Brunette, N., Goodson, A., Dauparas, J., Yi, S. Y., Yang, E. C., Dowling, Q., Nguyen, H., Kang, A., Bera, A. K., et al. (2023) · Proceedings of the National Academy of Sciences

Protein Structure and DynamicsBiochemical and Structural Characterization

Cited by 42

Computational design of serine hydrolases

Lauko, A., Pellock, S. J., Anischanka, I., Sumida, K. H., Juergens, D., Ahern, W., Shida, A., Hunt, A., Kalvet, I., Norn, C., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 16

ALS mutations disrupt self-association between the ubiquilin STI1 hydrophobic groove and internal placeholder sequences

Onwunma, J., Binsabaan, S., Allen, S. P., Thanthirige, S. R., Gaur, D., Sankaran, B., & Wohlever, M. L. (2026) · The EMBO Journal

Amyotrophic Lateral Sclerosis ResearchHeat shock proteins research

Cited by 10

ALS mutations disrupt self-association between the Ubiquilin Sti1 hydrophobic groove and internal placeholder sequences

Onwunma, J., Binsabaan, S., Allen, S. P., Sankaran, B., & Wohlever, M. L. (2024) · The EMBO Journal

Amyotrophic Lateral Sclerosis ResearchHeat shock proteins research

Cited by 10

Inhibition of ice recrystallization with designed twistless helical repeat proteins

de Haas, R. J., Pyles, H., Huddy, T. F., van Ossenbruggen, J., Zheng, C., van den Broek, D., Carr, A., Bera, A. K., Kang, A., Brackenbrough, E., et al. (2025) · Proceedings of the National Academy of Sciences

Protein Structure and Dynamicsnanoparticles nucleation surface interactions

Cited by 6

Inhibition of ice recrystallization with designed twistless helical repeat proteins

de Haas, R. J., Pyles, H., Huddy, E. B., van Ossenbruggen, J., Zheng, C., van den Broek, D., Giezen, S. N., Carr, A., Bera, A. K., Kang, A., et al. (2025) · Proceedings of the National Academy of Sciences

Protein Structure and Dynamicsnanoparticles nucleation surface interactions

Cited by 6