Schirmer, Melanie

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Lloyd-Price, J., Arze, C., Ananthakrishnan, A. N., Schirmer, M., Avila-Pacheco, J., Poon, T. W., Andrews, E., Ajami, N. J., Bonham, K. S., Brislawn, C. J., et al. (2019) · Nature

Gut microbiota and healthInflammatory Bowel Disease

Cited by 3,143

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

Zhernakova, A., Kurilshikov, A., Bonder, M. J., Tigchelaar, E. F., Schirmer, M., Vatanen, T., Mujagic, Z., Vila, A. V., Falony, G., Vieira-Silva, S., et al. (2016) · Science

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 1,914

Species-level functional profiling of metagenomes and metatranscriptomes

Franzosa, E. A., McIver, L. J., Rahnavard, G., Thompson, L. R., Schirmer, M., Weingart, G., Lipson, K. S., Knight, R., Caporaso, J. G., Segata, N., et al. (2018) · Nature Methods

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 1,693

The effect of host genetics on the gut microbiome

Bonder, M. J., Kurilshikov, A., Tigchelaar, E. F., Mujagic, Z., Imhann, F., Vila, A. V., Deelen, P., Vatanen, T., Schirmer, M., Smeekens, S. P., et al. (2016) · Nature Genetics

Gut microbiota and healthGenetic Associations and Epidemiology

Cited by 819

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

D’Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., Shakya, M., Podar, M., Quince, C., & Hall, N. (2016) · BMC Genomics

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 405

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Schirmer, M., D’Amore, R., Ijaz, U. Z., Hall, N., & Quince, C. (2016) · BMC Bioinformatics

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 376

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin

Ma, S., Shungin, D., Mallick, H., Schirmer, M., Nguyen, L. H., Kolde, R., Franzosa, E., Vlamakis, H., Xavier, R., & Huttenhower, C. (2022) · Genome biology

Gut microbiota and healthInflammatory Bowel Disease

Cited by 164

Deciphering mechanisms and implications of bacterial translocation in human health and disease

Jin, S., Wetzel, D., & Schirmer, M. (2022) · Current Opinion in Microbiology

Gut microbiota and healthGastrointestinal motility and disorders

Cited by 39