Boettiger, Alistair N.

Spatially resolved, highly multiplexed RNA profiling in single cells

Chen, K. H., Boettiger, A. N., Moffitt, J. R., Wang, S., & Zhuang, X. (2015) · Science

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 2,969

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

Bintu, B., Mateo, L. J., Su, J.-H., Sinnott-Armstrong, N. A., Parker, M., Kinrot, S., Yamaya, K., Boettiger, A. N., & Zhuang, X. (2018) · Science

Genomics and Chromatin DynamicsAdvanced Fluorescence Microscopy Techniques

Cited by 976

Visualizing DNA folding and RNA in embryos at single-cell resolution

Mateo, L. J., Murphy, S. E., Hafner, A., Cinquini, I. S., Walker, C. A., & Boettiger, A. N. (2019) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 446

Shadow Enhancers Foster Robustness of Drosophila Gastrulation

Perry, M. W., Boettiger, A. N., Bothma, J. P., & Levine, M. (2010) · Current Biology

Developmental Biology and Gene RegulationGenomics and Chromatin Dynamics

Cited by 396

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes

Beliveau, B. J., Boettiger, A. N., Avendaño, M. S., Jungmann, R., McCole, R. B., Joyce, E. F., Kim-Kiselak, C., Bantignies, F., Fonseka, C. Y., Erceg, J., et al. (2015) · Nature Communications

Advanced Fluorescence Microscopy TechniquesGenomic variations and chromosomal abnormalities

Cited by 384

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo

Perry, M. W., Boettiger, A. N., & Levine, M. (2011) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 228

How subtle changes in 3D structure can create large changes in transcription

Xiao, J. Y., Hafner, A., & Boettiger, A. N. (2021) · eLife

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 162

How subtle changes in 3D structure can create large changes in transcription

Xiao, J., Hafner, A., & Boettiger, A. N. (2020) · eLife

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 162

Structural elements promote architectural stripe formation and facilitate ultra-long-range gene regulation at a human disease locus

Chen, L.-F., Long, H. K., Park, M., Swigut, T., Boettiger, A. N., & Wysocka, J. (2023) · Molecular Cell

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 66

Long-range regulation of transcription scales with genomic distance in a gene-specific manner

Jensen, C. L., Chen, L.-F., Swigut, T., Crocker, O. J., Yao, D., Bassik, M. C., Ferrell, J. E., Boettiger, A. N., & Wysocka, J. (2025) · Molecular Cell

Genomics and Chromatin DynamicsCRISPR and Genetic Engineering

Cited by 39