Banga, Julio R.

Parameter estimation in biochemical pathways: a comparison of global optimization methods

Moles, C. G., Mendes, P., & Banga, J. R. (2003) · Genome Research

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 858

Structural identifiability of systems biology models: a critical comparison of methods

Chis, O.-T., Banga, J. R., & Balsa-Canto, E. (2011) · PLoS ONE

Gene Regulatory Network AnalysisControl Systems and Identification

Cited by 448

A hybrid approach for efficient and robust parameter estimation in biochemical pathways

Rodriguez-Fernandez, M., Mendes, P., & Banga, J. R. (2006) · Biosystems

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 304

Optimization in computational systems biology

Banga, J. R. (2008) · BMC Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 278

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

Rodriguez-Fernandez, M., Egea, J. A., & Banga, J. R. (2006) · BMC Bioinformatics

Metaheuristic Optimization Algorithms ResearchGene Regulatory Network Analysis

Cited by 278

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

Villaverde, A. F., & Banga, J. R. (2014) · Journal of The Royal Society Interface

Gene Regulatory Network AnalysisControl Systems and Identification

Cited by 229

An iterative identification procedure for dynamic modeling of biochemical networks

Balsa-Canto, E., Alonso, A. A., & Banga, J. R. (2010) · BMC Systems Biology

Gene Regulatory Network AnalysisControl Systems and Identification

Cited by 202

Scatter search for chemical and bio-process optimization

Egea, J. A., Rodríguez-Fernández, M., Banga, J. R., & Martí, R. (2007) · Journal of Global Optimization

Metaheuristic Optimization Algorithms ResearchAdvanced Optimization Algorithms Research

Cited by 171

Parameter estimation and optimal experimental design

Banga, J. R., & Balsa-Canto, E. (2008) · Essays in Biochemistry

Gene Regulatory Network AnalysisOptimal Experimental Design Methods

Cited by 141

Computational procedures for optimal experimental design in biological systems

Balsa-Canto, E., Alonso, A. A., & Banga, J. R. (2008) · IET Systems Biology

Optimal Experimental Design MethodsControl Systems and Identification

Cited by 124

Hybrid optimization method with general switching strategy for parameter estimation.

Balsa-Canto, E., Peifer, M., Banga, J. R., Timmer, J., & Fleck, C. (2008) · BMC Systems Biology

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 105

PEtab—Interoperable specification of parameter estimation problems in systems biology

Schmiester, L., Schälte, Y., Bergmann, F. T., Camba, T., Dudkin, E., Egert, J., Fröhlich, F., Fuhrmann, L., Hauber, A. L., Kemmer, S., et al. (2021) · PLOS Computational Biology

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 96

On the relationship between sloppiness and identifiability

Chis, O.-T., Villaverde, A. F., Banga, J. R., & Balsa-Canto, E. (2016) · Mathematical Biosciences

Gene Regulatory Network AnalysisControl Systems and Identification

Cited by 84

Inference of complex biological networks: distinguishability issues and optimization-based solutions

Szederkényi, G., Banga, J. R., & Alonso, A. A. (2011) · BMC Systems Biology

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 78

A cooperative strategy for parameter estimation in large scale systems biology models

Villaverde, A. F., Egea, J. A., & Banga, J. R. (2012) · BMC Systems Biology

Metaheuristic Optimization Algorithms ResearchGene Regulatory Network Analysis

Cited by 56

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

Henriques, D., Villaverde, A. F., Rocha, M., Saez-Rodriguez, J., & Banga, J. R. (2017) · PLOS Computational Biology

Gene Regulatory Network AnalysisBioinformatics and Genomic Networks

Cited by 44

A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology

Penas, D. R., Henriques, D., González, P., Doallo, R., Saez-Rodriguez, J., & Banga, J. R. (2017) · PLOS ONE

Metaheuristic Optimization Algorithms ResearchGene Regulatory Network Analysis

Cited by 16