Zhang, Yang

PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning

Bell, E. W., Schwartz, J. H., Freddolino, L., & Zhang, Y. (2022) · Journal of Molecular Biology

Bioinformatics and Genomic NetworksMachine Learning in Bioinformatics

Cited by 67

Multilayered N-glycoproteomics reveals impaired N-glycosylation promoting Alzheimer’s disease

Fang, P., Xie, J.-J., Sang, S.-M., Zhang, L., Liu, M.-Q., Yang, L.-J., Xu, Y.-T., Yan, G.-Q., Yao, J., Gao, X., et al. (2019) · Analytical Chemistry

Glycosylation and Glycoproteins ResearchAlzheimer's disease research and treatments

Cited by 60

Probiotic Pediococcus pentosaceus ameliorates MPTP-induced oxidative stress via regulating the gut microbiota–gut–brain axis

Pan, S., Wei, H., Yuan, S., Kong, Y., Yang, H., Zhang, Y., Cui, X., Chen, W., Liu, J., & Zhang, Y. (2022) · Frontiers in Cellular and Infection Microbiology

Parkinson's Disease Mechanisms and TreatmentsProbiotics and Fermented Foods

Cited by 51

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Zhang, C., Zheng, W., Cheng, M., Omenn, G. S., Freddolino, P. L., & Zhang, Y. (2021) · Journal of Proteome Research

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 27

Recent advances in automated protein design and its future challenges

Setiawan, D., Brender, J., & Zhang, Y. (2018) · Expert Opinion on Drug Discovery

Protein Structure and DynamicsChemical Synthesis and Analysis

Cited by 26

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Vallat, B., Tauriello, G., Bienert, S., Haas, J., Webb, B. M., Žídek, A., Zheng, W., Peisach, E., Piehl, D. W., Anischanka, I., et al. (2023) · Journal of Molecular Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 26

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018–2019 Additions to neXtProt and the CAFA3 Challenge

Zhang, C., Lane, L., Omenn, G. S., & Zhang, Y. (2019) · Journal of Proteome Research

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 22

Integrating Multimeric Threading With High-throughput Experiments for Structural Interactome of Escherichia coli

Gong, W., Guerler, A., Zhang, C., Warner, E., Li, C., & Zhang, Y. (2021) · Journal of Molecular Biology

Protein Structure and DynamicsBioinformatics and Genomic Networks

Cited by 13

End-to-end cryo-EM complex structure determination with high accuracy and ultra-fast speed

Wang, J., Tan, C., Gao, Z., Zhang, G., Zhang, Y., & Li, S. Z. (2025) · Nature Machine Intelligence

Advanced Electron Microscopy Techniques and ApplicationsProtein Structure and Dynamics

Cited by 8