Xu, Xun

Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., et al. (2018) · Cell

Genetic Associations and EpidemiologyForensic and Genetic Research

Cited by 279

Sex- and age-related trajectories of the adult human gut microbiota shared across populations of different ethnicities

Zhang, X., Zhong, H., Li, Y., Shi, Z., Ren, H., Zhang, Z., Zhou, X., Tang, S., Han, X., Lin, Y., et al. (2021) · Nature Aging

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 250

10KP: A phylodiverse genome sequencing plan

Cheng, S., Melkonian, M., Smith, S. A., Brockington, S., Archibald, J. M., Delaux, P.-M., Li, F.-W., Melkonian, B., Mavrodiev, E. V., Sun, W., et al. (2018) · GigaScience

Genomics and Phylogenetic StudiesPlant Diversity and Evolution

Cited by 248

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Liu, L., Liu, C., Quintero, A., Wu, L., Yuan, Y., Wang, M., Cheng, M., Leng, L., Xu, L., Dong, G., et al. (2019) · Nature Communications

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 243

Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex

Chen, A., Sun, Y., Lei, Y., Li, C., Liao, S., Meng, J., Bai, Y., Liu, Z., Liang, Z., Zhu, Z., et al. (2023) · Cell

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 232

Deciphering spatial domains from spatial multi-omics with SpatialGlue

Long, Y., Ang, K. S., Sethi, R., Liao, S., Heng, Y., van Olst, L., Ye, S., Zhong, C., Xu, H., Zhang, D., et al. (2024) · Nature Methods

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 223

Genome-wide characteristics of de novo mutations in autism

Yuen, R. K., Merico, D., Cao, H., Pellecchia, G., Alipanahi, B., Thiruvahindrapuram, B., Tong, X., Sun, Y., Cao, D., Zhang, T., et al. (2016) · npj Genomic Medicine

Autism Spectrum Disorder ResearchGenetics and Neurodevelopmental Disorders

Cited by 216

Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning

Xiang, X., Corsi, G. I., Anthon, C., Qu, K., Pan, X., Liang, X., Han, P., Dong, Z., Liu, L., Zhong, J., et al. (2021) · Nature Communications

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 209

Novel loci and pathways significantly associated with longevity

Zeng, Y., Nie, C., Min, J., Liu, X., Li, M., Chen, H., Xu, H., Wang, M., Ni, T., Li, Y., et al. (2016) · Scientific Reports

Genetic Associations and EpidemiologyGenetics, Aging, and Longevity in Model Organisms

Cited by 195

African lungfish genome sheds light on the vertebrate water-to-land transition

Wang, K., Wang, J., Zhu, C., Yang, L., Ren, Y., Ruan, J., Fan, G., Hu, J., Xu, W., Bi, X., et al. (2021) · Cell

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 192

PIRD: pan immune repertoire database

Zhang, W., Wang, L., Liu, K., Wei, X., Yang, K., Du, W., Wang, S., Guo, N., Ma, C., Luo, L., et al. (2020) · Bioinformatics

T-cell and B-cell Immunologyvaccines and immunoinformatics approaches

Cited by 166

Computational approaches and challenges in spatial transcriptomics

Fang, S., Chen, B., Zhang, Y., Sun, H., Liu, L., Liu, S., Li, Y., & Xu, X. (2023) · Genomics, Proteomics & Bioinformatics

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 159

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts

Bian, C., Hu, Y., Ravi, V., Kuznetsova, I. S., Shen, X., Mu, X., Sun, Y., You, X., Li, J., Li, X., et al. (2016) · Scientific Reports

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 107

Smad4 is required to regulate the fate of cranial neural crest cells

Ko, S. O., Chung, I. H., Xu, X., Oka, S., Zhao, H., Cho, E. S., Deng, C., & Chai, Y. (2007) · Developmental Biology

Developmental Biology and Gene RegulationCraniofacial Disorders and Treatments

Cited by 78

A spatiotemporal atlas of mouse liver homeostasis and regeneration

Xu, J., Guo, P., Hao, S., Shangguan, S., Shi, Q., Volpe, G., Huang, K., Zuo, J., An, J., Yuan, Y., et al. (2024) · Nature Genetics

Liver physiology and pathologySingle-cell and spatial transcriptomics

Cited by 75

A spatiotemporal atlas of cholestatic injury and repair in mice

Wu, B., Shentu, X., Nan, H., Guo, P., Hao, S., Xu, J., Shangguan, S., Cui, L., Cen, J., Deng, Q., et al. (2024) · Nature Genetics

Liver physiology and pathologyDrug-Induced Hepatotoxicity and Protection

Cited by 65

The first chromosome‐level genome for a marine mammal as a resource to study ecology and evolution

Fan, G., Zhang, Y., Liu, X., Wang, J., Sun, Z., Sun, S., Zhang, H., Chen, J., Lv, M., Han, K., et al. (2019) · Molecular Ecology Resources

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 45

Massively targeted evaluation of therapeutic CRISPR off-targets in cells

Pan, X., Qu, K., Yuan, H., Xiang, X., Anthon, C., Pashkova, L., Liang, X., Han, P., Corsi, G. I., Xu, F., et al. (2022) · Nature Communications

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 42

Spatiotemporal Omics-Refining the landscape of precision medicine

Zhang, J., Yin, J., Heng, Y., Xie, K., Chen, A., Amit, I., Bian, X.-W., & Xu, X. (2022) · Life Medicine

Single-cell and spatial transcriptomicsCancer Genomics and Diagnostics

Cited by 27

Single-cell RNA-seq unveils critical regulators of human FOXP3+ regulatory T cell stability

Yi, G., Zhao, Y., Xie, F., Zhu, F., Wan, Z., Wang, J., Wang, X., Gao, K., Cao, L., Li, X., et al. (2020) · Science Bulletin

T-cell and B-cell ImmunologyPsoriasis: Treatment and Pathogenesis

Cited by 27

Wnt5b regulates apoptosis in Litopenaeus vannamei against white spot syndrome virus

Wang, C., Ruan, L., Shi, H., & Xu, X. (2018) · Fish & Shellfish Immunology

Invertebrate Immune Response MechanismsAquaculture disease management and microbiota

Cited by 21