Philippe, Hervé

Tunicates and not cephalochordates are the closest living relatives of vertebrates

Delsuc, F., Brinkmann, H., Chourrout, D., & Philippe, H. (2006) · Nature

Developmental Biology and Gene RegulationGenomics and Phylogenetic Studies

Cited by 1,651

Phylotranscriptomic analysis of the origin and early diversification of land plants

Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Carpenter, E., Matasci, N., Ayyampalayam, S., Barker, M. S., Burleigh, J. G., Gitzendanner, M. A., et al. (2014) · Proceedings of the National Academy of Sciences

Protist diversity and phylogenyPlant Diversity and Evolution

Cited by 1,252

Resolving difficult phylogenetic questions: Why more sequences are not enough

Philippe, H., Brinkmann, H., Lavrov, D. V., Littlewood, D. T. J., Manuel, M., Wörheide, G., & Baurain, D. (2011) · PLoS Biology

Genomics and Phylogenetic StudiesPlant Diversity and Evolution

Cited by 1,129

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

Lartillot, N., Brinkmann, H., & Philippe, H. (2007) · BMC Evolutionary Biology

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 705

Phylogenomics: The beginning of incongruence?

JEFFROY, O., BRINKMANN, H., DELSUC, F., & PHILIPPE, H. (2006) · Trends in Genetics

Genomics and Phylogenetic StudiesPlant Diversity and Evolution

Cited by 698

Phylogenomics Revives Traditional Views on Deep Animal Relationships

Philippe, H., Derelle, R., Lopez, P., Pick, K., Borchiellini, C., Boury-Esnault, N., Vacelet, J., Renard, E., Houliston, E., Quéinnec, E., et al. (2009) · Current Biology

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 695

Computing Bayes factors using thermodynamic integration.

Lartillot, N., & Philippe, H. (2006) · Systematic Biology

Markov Chains and Monte Carlo MethodsStatistical Methods and Bayesian Inference

Cited by 668

The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?

Douzery, E. J. P., Snell, E. A., Bapteste, E., Delsuc, F., & Philippe, H. (2004) · Proceedings of the National Academy of Sciences

Protist diversity and phylogenyEvolution and Paleontology Studies

Cited by 638

A general comparison of relaxed molecular clock models

Lepage, T., Bryant, D., Philippe, H., & Lartillot, N. (2007) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 546

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals

Simion, P., Philippe, H., Baurain, D., Jager, M., Richter, D. J., Di Franco, A., Roure, B., Satoh, N., Quéinnec, É., Ereskovsky, A., et al. (2017) · Current Biology

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 518

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

Roure, B., Baurain, D., & Philippe, H. (2013) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 365

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

Pick, K. S., Philippe, H., Schreiber, F., Erpenbeck, D., Jackson, D. J., Wrede, P., Wiens, M., Alie, A., Morgenstern, B., Manuel, M., et al. (2010) · Molecular Biology and Evolution

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 334

How good are deep phylogenetic trees?

Philippe, H., & Laurent, J. (1998) · Current Opinion in Genetics & Development

Genomics and Phylogenetic StudiesProtist diversity and phylogeny

Cited by 324

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

Rodríguez-Ezpeleta, N., Brinkmann, H., Roure, B., Lartillot, N., Lang, B. F., & Philippe, H. (2007) · Systematic Biology

Genomics and Phylogenetic StudiesProtist diversity and phylogeny

Cited by 323

Genomic data do not support comb jellies as the sister group to all other animals

Pisani, D., Pett, W., Dohrmann, M., Feuda, R., Rota-Stabelli, O., Philippe, H., Lartillot, N., & Wörheide, G. (2015) · Proceedings of the National Academy of Sciences

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 319

Ancient Phylogenetic Relationships

Gribaldo, S., & Philippe, H. (2002) · Theoretical Population Biology

Genomics and Phylogenetic StudiesProtist diversity and phylogeny

Cited by 314

Phylogenomics

Philippe, H., Delsuc, F., Brinkmann, H., & Lartillot, N. (2005) · Annual Review of Ecology, Evolution, and Systematics

Genomics and Phylogenetic StudiesPlant Diversity and Evolution

Cited by 306

Phylotranscriptomic consolidation of the jawed vertebrate timetree

Irisarri, I., Baurain, D., Brinkmann, H., Delsuc, F., Sire, J.-Y., Kupfer, A., Petersen, J., Jarek, M., Meyer, A., Vences, M., et al. (2017) · Nature Ecology & Evolution

Genomics and Phylogenetic StudiesEvolution and Paleontology Studies

Cited by 299

Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals

Feuda, R., Dohrmann, M., Pett, W., Philippe, H., Rota-Stabelli, O., Lartillot, N., Wörheide, G., & Pisani, D. (2017) · Current Biology

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 291

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Denoeud, F., Henriet, S., Mungpakdee, S., Aury, J.-M., Da Silva, C., Brinkmann, H., Mikhaleva, J., Olsen, L. C., Jubin, C., Cañestro, C., et al. (2010) · Science

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 285

The Rooting of the Universal Tree of Life Is Not Reliable

Philippe, H., & Forterre, P. (1999) · Journal of Molecular Evolution

Genomics and Phylogenetic StudiesProtist diversity and phylogeny

Cited by 267

Genomic insights into the evolutionary origin of Myxozoa within Cnidaria

Chang, E. S., Neuhof, M., Rubinstein, N. D., Diamant, A., Philippe, H., Huchon, D., & Cartwright, P. (2015) · Proceedings of the National Academy of Sciences

Myxozoan Parasites in Aquatic SpeciesMarine Invertebrate Physiology and Ecology

Cited by 262

Phylogenomic Insights into Animal Evolution

Telford, M. J., Budd, G. E., & Philippe, H. (2015) · Current Biology

Marine Invertebrate Physiology and EcologyGenomics and Phylogenetic Studies

Cited by 213

Pitfalls in supermatrix phylogenomics

Philippe, H., Vienne, D. M. D., Ranwez, V., Roure, B., Baurain, D., & Delsuc, F. (2017) · European Journal of Taxonomy

Genomics and Phylogenetic StudiesProtist diversity and phylogeny

Cited by 173