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Technical note: improved ancient DNA purification for PCR using ion-exchange columns
Abstract
A novel method of ancient DNA (aDNA) purification was developed using ion‐exchange columns to improve PCR‐amplifiable DNA extraction from ancient bone samples. Thirteen PCR‐resistant ancient bone samples aged 500–3,300 years were tested to extract aDNA using a recently reported, silica‐based aDNA extraction method and an ion‐exchange column method for the further purification. The PCR success rates of the aDNA extracts were evaluated for the amplification ability of the fragments of mitochondrial DNA, a high‐copy DNA, and amelogenin, a low‐copy DNA. The results demonstrate that the further purification of silica‐based aDNA extracts using ion‐exchange columns considerably improved PCR amplification. We suggest that the ion‐exchange column‐based method will be useful for the improvement of PCR‐amplifiable aDNA extraction, particularly from the poorly preserved, PCR‐resistant, ancient samples. Am J Phys Anthropol, 2008. © 2008 Wiley‐Liss, Inc.
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“Extraction and purification of aDNAs from human and horse skeletons were carried out using our previously published method, which ensures both sufficient quality and quantity of aDNA for PCR amplification [18, 65].”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [65]
In the citing paper
“Purified aDNAs were routinely quantified by comparing individual curves to a standard curve, and ion exchange columns were used to eliminate PCR inhibitors from aDNA extracts that often lead to PCR failure [18, 65].”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [65]
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Cited by
Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan
Lkhagvasuren, G., Shin, H., Lee, S. E., Tumen, D., Kim, J.-H., Kim, K.-Y., Kim, K., Park, A. J., Lee, H. W., Kim, M. J., et al. (2016) · PLOS ONE · doi:10.1371/journal.pone.0161622 · Cited by 19
Self-citation
Metadata
- Authors
- Kim, K., Kim, K., Jeon, E., Togloom, A., Cho, Y., Lee, M., Lkhagvasuren, G., Choi, J., Tumen, D., Ja Park, A., Kim, K., Park, K., Kim, J., Noh, M., Yoo, K., & Lee, K.
- Venue
- American Journal of Physical Anthropology
- Publisher
- Wiley
- Published
- 2008-02-06
- Volume
- 136
- Issue
- 1
- Pages
- 114-121
- ISSN
- 0002-9483
- 1096-8644
- Cited by
- 21
- References
- 0
- Language
- en
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- Kim, K., Kim, K., Jeon, E., Togloom, A., Cho, Y., Lee, M., Lkhagvasuren, G., Choi, J., Tumen, D., Ja Park, A., Kim, K., Park, K., Kim, J., Noh, M., Yoo, K., & Lee, K. (2008). Technical note: improved ancient DNA purification for PCR using ion-exchange columns. American Journal of Physical Anthropology. https://doi.org/10.1002/ajpa.20782