DNA repair pathways underlie a common genetic mechanism modulating onset in polyglutamine diseases
Open accessAbstract
Objective: The polyglutamine diseases, including Huntington's disease (HD) and multiple spinocerebellar ataxias (SCAs), are among the commonest hereditary neurodegenerative diseases. They are caused by expanded CAG tracts, encoding glutamine, in different genes. Longer CAG repeat tracts are associated with earlier ages at onset, but this does not account for all of the difference, and the existence of additional genetic modifying factors has been suggested in these diseases. A recent genome‐wide association study (GWAS) in HD found association between age at onset and genetic variants in DNA repair pathways, and we therefore tested whether the modifying effects of variants in DNA repair genes have wider effects in the polyglutamine diseases. Methods: We assembled an independent cohort of 1,462 subjects with HD and polyglutamine SCAs, and genotyped single‐nucleotide polymorphisms (SNPs) selected from the most significant hits in the HD study. Results: In the analysis of DNA repair genes as a group, we found the most significant association with age at onset when grouping all polyglutamine diseases (HD+SCAs; p = 1.43 × 10 –5 ). In individual SNP analysis, we found significant associations for rs3512 in FAN1 with HD+SCAs ( p = 1.52 × 10 –5 ) and all SCAs ( p = 2.22 × 10 –4 ) and rs1805323 in PMS2 with HD+SCAs ( p = 3.14 × 10 –5 ), all in the same direction as in the HD GWAS. Interpretation: We show that DNA repair genes significantly modify age at onset in HD and SCAs, suggesting a common pathogenic mechanism, which could operate through the observed somatic expansion of repeats that can be modulated by genetic manipulation of DNA repair in disease models. This offers novel therapeutic opportunities in multiple diseases. Ann Neurol 2016;79:983–990
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
CAG expansion in HD is dependent upon DNA repair proteins such as OGG1, MLH1, and MSH2.
“Notably, CAG expansion has been found to be dependent upon DNA repair proteins such as OGG1, MLH1, and MSH2, whose detection of oxidized or mismatched bases in these repetitive elements could potentially elicit erroneous repair, leading to CAG expansion (Kovtun et al, 2007; Bettencourt et al, 2016; Pinto et al, 2013; Manley et al, 1999; Lee et al, 2017, 1).”
From Mechanisms of DNA damage-mediated neurotoxicity in neurodegenerative disease (2022) · cites this paper as Bettencourt et al, 2016
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works
Biological insights from 108 schizophrenia-associated genetic loci
Schizophrenia Working Group of the Psychiatric Genomics Consortium (2014) · Nature · doi:10.1038/nature13595 · Cited by 7,577 · see citing works
Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy
Farmer, H., McCabe, N., Lord, C. J., Tutt, A. N. J., Johnson, D. A., Richardson, T. B., Santarosa, M., Dillon, K. J., Hickson, I., Knights, C., et al. (2005) · Nature · doi:10.1038/nature03445 · Cited by 6,683 · see citing works
Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
The International Schizophrenia Consortium (2009) · Nature · doi:10.1038/nature08185 · Cited by 4,821 · see citing works
The ATM protein kinase: regulating the cellular response to genotoxic stress, and more
Shiloh, Y., & Ziv, Y. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3546 · Cited by 1,649 · see citing works
Power and predictive accuracy of polygenic risk scores
Dudbridge, F. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003348 · Cited by 1,509 · see citing works
Expandable DNA repeats and human disease
Mirkin, S. M. (2007) · Nature · doi:10.1038/nature05977 · Cited by 934 · see citing works
Repeat instability: mechanisms of dynamic mutations
Pearson, C. E., Edamura, K. N., & Cleary, J. D. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1689 · Cited by 924 · see citing works
Tabrizi, S. J., Scahill, R. I., Owen, G. N., Dürr, A., Leavitt, B. R., Roos, R. A. C., Borowsky, B., Landwehrmeyer, G. B., Frost, C. D., Johnson, H. J., et al. (2013) · The Lancet Neurology · doi:10.1016/s1474-4422(13)70088-7 · Cited by 834 · see citing works
Self-citationDiseases of Unstable Repeat Expansion: Mechanisms and Common Principles
Gatchel, J. R., & Zoghbi, H. Y. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1691 · Cited by 784 · see citing works
The U.S.–Venezuela Collaborative Research Project*, & Wexler, N. S. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0308679101 · Cited by 761 · see citing works
Repeat instability : mechanisms of dynamic mutations
Pearson, C. E. (2005) · Medical Entomology and Zoology · Cited by 711 · see citing works
Identification of Genetic Factors that Modify Clinical Onset of Huntington’s Disease
Lee, J.-M., Wheeler, V. C., Chao, M. J., Vonsattel, J. P. G., Pinto, R. M., Lucente, D., Abu-Elneel, K., Ramos, E. M., Mysore, J. S., Gillis, T., et al. (2015) · Cell · doi:10.1016/j.cell.2015.07.003 · Cited by 655 · see citing works
Self-citationDNA damage and its links to neurodegeneration
Madabhushi, R., Pan, L., & Tsai, L.-H. (2014) · Neuron · doi:10.1016/j.neuron.2014.06.034 · Cited by 654 · see citing works
Takashima, H., Boerkoel, C. F., John, J., Saifi, G. M., Salih, M. A. M., Armstrong, D., Mao, Y., Quiocho, F. A., Roa, B. B., Nakagawa, M., et al. (2002) · Nature Genetics · doi:10.1038/ng987 · Cited by 522 · see citing works
Mechanisms of trinucleotide repeat instability during human development
McMurray, C. T. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2828 · Cited by 496 · see citing works
400: A Method for Combining Non-Independent, One-Sided Tests of Significance
Brown, M. B. (1975) · Biometrics · doi:10.2307/2529826 · Cited by 473 · see citing works
OGG1 initiates age-dependent CAG trinucleotide expansion in somatic cells
Kovtun, I. V., Liu, Y., Bjoras, M., Klungland, A., Wilson, S. H., & McMurray, C. T. (2007) · Nature · doi:10.1038/nature05778 · Cited by 433 · see citing works
Repeat instability as the basis for human diseases and as a potential target for therapy
López Castel, A., Cleary, J. D., & Pearson, C. E. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2854 · Cited by 429 · see citing works
Jackson, S. E., & Chester, J. D. (2014) · International Journal of Cancer · doi:10.1002/ijc.28940 · Cited by 367 · see citing works
Swami, M., Hendricks, A. E., Gillis, T., Massood, T., Mysore, J. S., Myers, R. H., & Wheeler, V. C. (2009) · Human Molecular Genetics · doi:10.1093/hmg/ddp242 · Cited by 330 · see citing works
Dragileva, E., Hendricks, A. E., Teed, A. M., Gillis, T., Lopez, E., Friedberg, E. C., Kucherlapati, R., Edelmann, W., Lunetta, K. L., MacDonald, M. E., et al. (2008) · Neurobiology of Disease · doi:10.1016/j.nbd.2008.09.014 · Cited by 247 · see citing works
Mismatch repair gene Msh2 modifies the timing of early disease in HdhQ111 striatum
Wheeler, V. C. (2003) · Human Molecular Genetics · doi:10.1093/hmg/ddg056 · Cited by 232 · see citing works
DNA instability in postmitotic neurons
Gonitel, R., Moffitt, H., Sathasivam, K., Woodman, B., Detloff, P., Faull, R., & Bates, G. (2008) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0800048105 · Cited by 225 · see citing works
Pathogenesis of ataxia-telangiectasia: the next generation of ATM functions
Ambrose, M., & Gatti, R. A. (2013) · Blood · doi:10.1182/blood-2012-09-456897 · Cited by 196 · see citing works
Modulation of the age at onset in spinocerebellar ataxia by CAG tracts in various genes
du Montcel, S. T., Dürr, A., Bauer, P., et al. (2014) · Brain · doi:10.1093/brain/awu174 · Cited by 176 · see citing works
MSH3 Polymorphisms and Protein Levels Affect CAG Repeat Instability in Huntington's Disease Mice
Tomé, S., MANLEY, K. M., Simard, J. P., Clark, G. W., Slean, M. M., Swami, M., Shelbourne, P., Tillier, E. R. M., Monckton, D. G., Messer, A. C., et al. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003280 · Cited by 171 · see citing works
Goula, A.-V., Berquist, B. R., Wilson, D. M., Wheeler, V. C., Trottier, Y., & Mérienne, K. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000749 · Cited by 145 · see citing works
The role of the DNA damage response in neuronal development, organization and maintenance
Barzilai, A., Biton, S., & Shiloh, Y. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.03.005 · Cited by 135 · see citing works
Mutations in PNKP Cause Recessive Ataxia with Oculomotor Apraxia Type 4
Brás, J., Alonso, I. D. C. M. P., Barbot, C., Costa, M. M., Darwent, L., Orme, T., Sequeiros, J., Hardy, J., Coutinho, P., & Guerreiro, R. J. (2015) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.01.005 · Cited by 133 · see citing works
DNA triplet repeat expansion and mismatch repair
Iyer, R. R., Pluciennik, A., Napierala, M., & Wells, R. D. (2015) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060614-034010 · Cited by 130 · see citing works
Age at onset variance analysis in spinocerebellar ataxias: A study in a Dutch–French cohort
van de Warrenburg, B. V. D., Hendriks, H., Dürr, A., van Zuijlen, M. V., Stevanin, G., Camuzat, A., Sinke, R., Brice, A., & Kremer, B. (2005) · Annals of Neurology · doi:10.1002/ana.20424 · Cited by 119 · see citing works
Self-citationHarris, J. L., Jakob, B., Taucher-Scholz, G., Dianov, G. L., Bécherel, O. J., & Lavin, M. F. (2009) · Human Molecular Genetics · doi:10.1093/hmg/ddp359 · Cited by 95 · see citing works
The Role of Interruptions in polyQ in the Pathology of SCA1
Menon, R., Nethisinghe, S., Faggiano, S., Vannocci, T., Rezaei, H., Pemble, S., Sweeney, M., Wood, N., Davis, M., Pastore, A., et al. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003648 · Cited by 83 · see citing works
Self-citationBudworth, H., Harris, F. R., Williams, P. T., Lee, D. Y., Holt, A., Pahnke, J., Szczęsny, B., Acevedo‐Torres, K., Ayala‐Peña, S., & McMurray, C. T. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005267 · Cited by 80 · see citing works
Chemical modifiers of unstable expanded simple sequence repeats: what goes up, could come down.
Gomes-Pereira, M., & Monckton, D. (2006) · Mutation research · doi:10.1016/j.mrfmmm.2006.01.011 · Cited by 72 · see citing works
Storey, E. (2014) · Seminars in neurology · doi:10.1055/s-0034-1386766 · Cited by 54 · see citing works
Mason, A. G., Tomé, S., Simard, J. P., Libby, R. T., Bammler, T. K., Beyer, R. P., Morton, A. J., Pearson, C. E., & Spada, A. R. L. (2013) · Human Molecular Genetics · doi:10.1093/hmg/ddt551 · Cited by 53 · see citing works
The APOE ε2 Allele Increases the Risk of Earlier Age at Onset in Machado-Joseph Disease
Bettencourt, C. (2011) · Archives of Neurology · doi:10.1001/archneurol.2011.636 · Cited by 39 · see citing works
Self-citationPeng, H., Wang, C., Chen, Z., Sun, Z., Jiao, B., Li, K., Huang, F., Hou, X., Wang, J., Shen, L. H., et al. (2014) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2014.03.020 · Cited by 29 · see citing works
Raposo, M., Ramos, A., Bettencourt, C., et al. (2015) · Brain · doi:10.1093/brain/awv206 · Cited by 26 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Molecular mechanisms underlying nucleotide repeat expansion disorders
Malik, I., Kelley, C. P., Wang, E. T., & Todd, P. K. (2021) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-021-00382-6 · Cited by 363 · see citing works
Moss, D. J. H., Pardiñas, A. F., Langbehn, D., Lo, K., Leavitt, B. R., Roos, R., Durr, A., Mead, S., Coleman, A., Santos, R. D., et al. (2017) · The Lancet Neurology · doi:10.1016/s1474-4422(17)30161-8 · Cited by 312 · see citing works
Self-citationOn the wrong DNA track: Molecular mechanisms of repeat-mediated genome instability
Khristich, A. N., & Mirkin, S. M. (2020) · Journal of Biological Chemistry · doi:10.1074/jbc.rev119.007678 · Cited by 289 · see citing works
Mechanisms of DNA damage-mediated neurotoxicity in neurodegenerative disease
Welch, G., & Tsai, L. (2022) · The EMBO Reports · doi:10.15252/embr.202154217 · Cited by 129 · see citing works
- Authors
- Bettencourt, C., Hensman‐Moss, D., Flower, M., Wiethoff, S., Brice, A., Goizet, C., Stevanin, G., Koutsis, G., Karadima, G., Panas, M., Yescas‐Gómez, P., García‐Velázquez, L. E., Alonso‐Vilatela, M. E., Lima, M., Raposo, M., Traynor, B., Sweeney, M., Wood, N., Giunti, P., The SPATAX Network, Durr, A., Holmans, P., Houlden, H., Tabrizi, S. J., & Jones, L.
- Affiliations
- National Hospital for Neurology and Neurosurgery (GB)
- Department of Neurodegenerative Disease, Institute of Neurology University College London London WC1N 3BG United Kingdom
- UCL Queen Square Institute of Neurology (GB)
- Hertie Institute for Clinical Brain Research (DE)
- Centre National de la Recherche Scientifique (FR)
- Université de Bordeaux (FR)
- Inserm U 1127, CNRS UMR 7225, Sorbonne Universités UPMC University Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière (ICM) Paris France
- National and Kapodistrian University of Athens (GR)
- Neurogenetics Unit, 1st Department of Neurology University of Athens Medical School, Eginition Hospital 115 28 Athens Greece
- Neurogenetics Department, National Institute of Neurology and Neurosurgery “Manuel Velasco Suárez” Mexico City CP14269 Mexico
- Instituto Nacional de Neurología y Neurocirugía (MX)
- Universidade dos Açores (PT)
- National Institutes of Health (US)
- University College London Hospitals NHS Foundation Trust (GB)
- Cardiff University (GB)
- Corresponding author
- Jones, Lesley
- ORCID
- Venue
- Annals of Neurology
- Publisher
- Wiley
- Published
- 2016-05-06
- Volume
- 79
- Issue
- 6
- Pages
- 983-990
- ISSN
- 0364-5134 (ISSN-L)
- 1531-8249
- PMC
- PMC4914895
- OpenAlex
- W2342089554
- Cited by
- 227
- References
- 41
- Citations by year
- 2026: 8 · 2025: 17 · 2024: 24 · 2023: 14 · 2022: 26 · 2021: 36 · 2020: 33 · 2019: 23 · 2018: 30 · 2017: 12 · 2016: 3
- FWCI
- 12.65
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Annals of Neurology (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- ORCA Online Research @Cardiff (Cardiff University) (acceptedVersion)
- HAL (submittedVersion, cc-by)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- Wellcome Trust (FP7/2007–2013, MR/L010305/1, WT093205 MA, 305121, WT104033/Z/14/Z)
- Multiple System Atrophy Trust (WT093205MA)
- National Institute for Health and Care Research (WT093205MA, ACF-2009-18-016, FP7/2007–2013, NF-SI-0515-10082)
- Brain Research Trust
- University College London (WT093205MA)
- European Commission (2007–2013, FP7 2007-2013, FP7/2007, 305121)
- University College London Hospitals NHS Foundation Trust
- Medical Research Council (MR/L02053X/1, FP7/20072013, MR/P007015/1, MR/L012936/1, MR/J003832/1, MR/L010305/1, MC_PC_14108, MR/J004758/1, WT093205 MA)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Hereditary Neurological Disorders
- Keywords
- polyglutamine diseases, Huntington's disease, spinocerebellar ataxia, DNA repair genes, age of onset, genetic modifiers, CAG repeat expansion, somatic repeat expansion, FAN1, PMS2, single nucleotide polymorphisms, neurodegenerative diseases
- MeSH terms
- Mismatch Repair Endonuclease PMS2, DNA Repair, Endodeoxyribonucleases, Exodeoxyribonucleases, Humans, Huntington Disease, Mutation, Age of Onset, Trinucleotide Repeat Expansion, Polymorphism, Single Nucleotide, Spinocerebellar Ataxias, Genome-Wide Association Study, Multifunctional Enzymes
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review