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DNA barcoding in animal species: progress, potential and pitfalls
Abstract
Despite 250 years of work in systematics, the majority of species remains to be identified. Rising extinction rates and the need for increased biological monitoring lend urgency to this task. DNA sequencing, with key sequences serving as a “barcode”, has therefore been proposed as a technology that might expedite species identification. In particular, the mitochondrial cytochrome c oxidase subunit 1 gene has been employed as a possible DNA marker for species and a number of studies in a variety of taxa have accordingly been carried out to examine its efficacy. In general, these studies demonstrate that DNA barcoding resolves most species, although some taxa have proved intractable. In some studies, barcoding provided a means of highlighting potential cryptic, synonymous or extinct species as well as matching adults with immature specimens. Higher taxa, however, have not been resolved as accurately as species. Nonetheless, DNA barcoding appears to offer a means of identifying species and may become a standard tool. BioEssays 29: 188–197, 2007. © 2007 Wiley Periodicals, Inc.
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Cites
Biological identifications through DNA barcodes
Hebert, P. D. N., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.2002.2218 · Cited by 13,376
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species
Hebert, P. D. N., Ratnasingham, S., & de Waard, J. R. (2003) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rsbl.2003.0025 · Cited by 4,466
DNA barcoding Australia's fish species
Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1716 · Cited by 4,332
Hebert, P. D. N., Penton, E. H., Burns, J. M., Janzen, D. H., & Hallwachs, W. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0406166101 · Cited by 3,488
Identification of Birds through DNA Barcodes
Hebert, P. D. N., Stoeckle, M. Y., Zemlak, T. S., & Francis, C. M. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020312 · Cited by 2,653
Shaw, J., Lickey, E. B., Beck, J. T., Farmer, S. B., Liu, W., Miller, J., Grubbs, K. C., Winder, C., Schilling, E. E., & Small, R. L. (2005) · American Journal of Botany · doi:10.3732/ajb.92.1.142 · Cited by 1,956
Use of DNA barcodes to identify flowering plants
Kress, W. J., Wurdack, K. J., Zimmer, E. A., Weigt, L. A., & Janzen, D. H. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503123102 · Cited by 1,953
Drake, J. W., Charlesworth, B., Charlesworth, D., & Crow, J. F. (1998) · Genetics · doi:10.1093/genetics/148.4.1667 · Cited by 1,932
DNA barcodes distinguish species of tropical Lepidoptera
Hajibabaei, M., Janzen, D. H., Burns, J. M., Hallwachs, W., & Hebert, P. D. N. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510466103 · Cited by 1,434
The Promise of DNA Barcoding for Taxonomy
Hebert, P. D. N., & Gregory, T. R. (2005) · Systematic Biology · doi:10.1080/10635150500354886 · Cited by 1,329
How Many Species Are There on Earth?
May, R. M. (1988) · Science · doi:10.1126/science.241.4872.1441 · Cited by 1,187
DNA Barcoding: Promise and Pitfalls
Moritz, C., & Cicero, C. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020354 · Cited by 998
Tautz, D., Arctander, P., Minelli, A., Thomas, R. H., & Vogler, A. P. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(02)00041-1 · Cited by 910
LITTLEWOOD, D. (1999) · Biological Journal of the Linnean Society · doi:10.1006/bijl.1998.0276 · Cited by 744
Multi-locus sequence typing: a tool for global epidemiology
Urwin, R., & Maiden, M. C. J. (2003) · Trends in Microbiology · doi:10.1016/j.tim.2003.08.006 · Cited by 730
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
Shearer, T. L., van Oppen, M. J. H., Romano, S. L., & Wörheide, G. (2002) · Molecular Ecology · doi:10.1046/j.1365-294x.2002.01652.x · Cited by 603
Smith, M. A., Woodley, N. E., Janzen, D. H., Hallwachs, W., & Hebert, P. D. N. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511318103 · Cited by 582
Identifying spiders through DNA barcodes
Barrett, R. D. H., & Hebert, P. D. N. (2005) · Canadian Journal of Zoology · doi:10.1139/z05-024 · Cited by 565
Blaxter, M. L. (2004) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2003.1447 · Cited by 553
Deciphering amphibian diversity through DNA barcoding: chances and challenges
Vences, M., Thomas, M., Bonett, R. M., & Vieites, D. R. (2005) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2005.1717 · Cited by 541
Taxonomic triage and the poverty of phylogeny
Wheeler, Q. D. (2004) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2003.1452 · Cited by 454
Cavalier-Smith, T. (2004) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.2004.2705 · Cited by 328
The intellectual content of taxonomy: a comment on DNA taxonomy
Lipscomb, D., Platnick, N., & Wheeler, Q. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(02)00060-5 · Cited by 320
DNA barcoding a useful tool for taxonomists
Schindel, D. E., & Miller, S. E. (2005) · Nature · doi:10.1038/435017b · Cited by 314
Taxonomy, DNA, and the Bar Code of Life
STOECKLE, M. (2003) · BioScience · doi:10.1641/0006-3568(2003)053[0796:tdatbc]2.0.co;2 · Cited by 289
Hogg, I. D., & Hebert, P. D. N. (2004) · Canadian Journal of Zoology · doi:10.1139/z04-041 · Cited by 268
DNA barcoding is no substitute for taxonomy
Ebach, M. C., & Holdrege, C. (2005) · Nature · doi:10.1038/434697b · Cited by 261
Cytonuclear genomic dissociation in African elephant species
Roca, A. L., Georgiadis, N., & O'Brien, S. J. (2005) · Nature Genetics · doi:10.1038/ng1485 · Cited by 238
Blaxter, M. (2003) · Nature · doi:10.1038/421122a · Cited by 224
Which Whales Are Hunted? A Molecular Genetic Approach to Monitoring Whaling
Baker, C. S., & Palumbi, S. R. (1994) · Science · doi:10.1126/science.265.5178.1538 · Cited by 198
Shortcuts in systematics? A commentary on DNA-based taxonomy
Seberg, O., Humphries, C. J., Knapp, S., Stevenson, D. W., Petersen, G., Scharff, N., & Andersen, N. M. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(02)00059-9 · Cited by 175
Statistical Approaches for DNA Barcoding
Nielsen, R., & Matz, M. V. (2006) · Systematic Biology · doi:10.1080/10635150500431239 · Cited by 150
DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you
Besansky, N. J., Severson, D. W., & Ferdig, M. T. (2003) · Trends in Parasitology · doi:10.1016/j.pt.2003.09.015 · Cited by 143
On the origin of Lake Malawi cichlid species: A population genetic analysis of divergence
Won, Y., Sivasundar, A., Wang, Y., & Hey, J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0502127102 · Cited by 138
Paquin, P., & Hedin, M. C. (2004) · Molecular Ecology · doi:10.1111/j.1365-294x.2004.02296.x · Cited by 117
Patterns of molecular genetic variation among African elephant populations
Comstock, K. E., Georgiadis, N., Pecon‐Slattery, J., Roca, A. L., Ostrander, E. A., O’Brien, S. J., & Wasser, S. K. (2002) · Molecular Ecology · doi:10.1046/j.1365-294x.2002.01615.x · Cited by 115
Barcoding generalist predators by polymerase chain reaction: carabids and spiders
Greenstone, M. H., Rowley, D. L., Heimbach, U., Lundgren, J. G., Pfannenstiel, R. S., & Rehner, S. A. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02628.x · Cited by 110
The problems and promise of DNA barcodes for species diagnosis of primate biomaterials
Lorenz, J. G., Jackson, W. E., Beck, J. C., & Hanner, R. (2005) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2005.1718 · Cited by 109
Hu, M., Chilton, N. B., Zhu, X., & Gasser, R. B. (2002) · Electrophoresis · Cited by 93
Baker, A. J., Huynen, L., Haddrath, O., Millar, C. D., & Lambert, D. M. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409435102 · Cited by 90
Whiteman, N. K., Santiago‐Alarcón, D., Johnson, K. P., & Parker, P. G. (2004) · International Journal for Parasitology · doi:10.1016/j.ijpara.2004.06.003 · Cited by 89
A revised version of the international code of virus classification and nomenclature
Mayo, M. A., & Horzinek, M. C. (1998) · Archives of Virology · doi:10.1007/s007050050406 · Cited by 63
www.DNA-surveillance: applied molecular taxonomy for species conservation and discovery
Baker, C. S., Dalebout, M. L., Lavery, S., & Ross, H. A. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(03)00101-0 · Cited by 55
Stansfield, W. D. (2004) · Journal of Heredity · doi:10.1093/jhered/esi007 · Cited by 51
DNA Barcoding: Perspectives from a “Partnerships for Enhancing Expertise in Taxonomy” (PEET) Debate
Smith, V. (2005) · Systematic Biology · doi:10.1080/10635150500354894 · Cited by 40
Ngarmamonpirat, C., Waikagul, J., Petmitr, S., et al. (2005) · Parasitology International · doi:10.1016/j.parint.2004.12.002 · Cited by 17
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Metadata
- Authors
- Waugh, J.
- Venue
- BioEssays
- Publisher
- Wiley
- Published
- 2007-01-16
- Volume
- 29
- Issue
- 2
- Pages
- 188-197
- ISSN
- 0265-9247 (ISSN-L)
- 1521-1878
- OpenAlex
- W2155053516
- Cited by
- 451
- References
- 46
- FWCI
- 3.71
- Type
- journal article
- Language
- en
- Open access
- closed
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