Using computer‐extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage
Open accessAbstract
BACKGROUND: The objective of this study was to demonstrate that computer‐extracted image phenotypes (CEIPs) of biopsy‐proven breast cancer on magnetic resonance imaging (MRI) can accurately predict pathologic stage. METHODS: The authors used a data set of deidentified breast MRIs organized by the National Cancer Institute in The Cancer Imaging Archive. In total, 91 biopsy‐proven breast cancers were analyzed from patients who had information available on pathologic stage (stage I, n = 22; stage II, n = 58; stage III, n = 11) and surgically verified lymph node status (negative lymph nodes, n = 46; ≥ 1 positive lymph node, n = 44; no lymph nodes examined, n = 1). Tumors were characterized according to 1) radiologist‐measured size and 2) CEIP. Then, models were built that combined 2 CEIPs to predict tumor pathologic stage and lymph node involvement, and the models were evaluated in a leave‐1‐out, cross‐validation analysis with the area under the receiver operating characteristic curve (AUC) as the value of interest. RESULTS: Tumor size was the most powerful predictor of pathologic stage, but CEIPs that captured biologic behavior also emerged as predictive (eg, stage I and II vs stage III demonstrated an AUC of 0.83). No size measure was successful in the prediction of positive lymph nodes, but adding a CEIP that described tumor “homogeneity” significantly improved discrimination (AUC = 0.62; P = .003) compared with chance. CONCLUSIONS: The current results indicate that MRI phenotypes have promise for predicting breast cancer pathologic stage and lymph node status. Cancer 2016;122:748–757. © 2015 American Cancer Society.
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Cites
A Simple Sequentially Rejective Multiple Test Procedure
(1979) · Scandinavian Journal of Statistics · doi:10.2307/4615733 · Cited by 21,526 · see citing works
The National Comprehensive Cancer Network (NCCN).
Wood, E. H. (2004) · Europe PMC (PubMed Central) · Cited by 2,843 · see citing works
Berg, W. A., Gutierrez, L., NessAiver, M. S., Carter, W. B., Bhargavan, M., Lewis, R. S., & Ioffe, O. B. (2004) · Radiology · doi:10.1148/radiol.2333031484 · Cited by 1,441 · see citing works
Boetes, C., Mus, R. D. M., Holland, R., et al. (1995) · Radiology · doi:10.1148/radiology.197.3.7480749 · Cited by 520 · see citing works
Lehmann, B. D., & Pietenpol, J. A. (2013) · The Journal of Pathology · doi:10.1002/path.4280 · Cited by 496 · see citing works
Buadu, L. D., Murakami, J., Murayama, S., et al. (1996) · Radiology · doi:10.1148/radiology.200.3.8756909 · Cited by 467 · see citing works
TCGA-Assembler: open-source software for retrieving and processing TCGA data
Zhu, Y., Qiu, P., & Ji, Y. (2014) · Nature Methods · doi:10.1038/nmeth.2956 · Cited by 407 · see citing works
Self-citationChen, W., Giger, M. L., & Bick, U. (2006) · Academic Radiology · doi:10.1016/j.acra.2005.08.035 · Cited by 358 · see citing works
Self-citationVolumetric texture analysis of breast lesions on contrast‐enhanced magnetic resonance images
Chen, W., Giger, M. L., Li, H., Bick, U., & Newstead, G. M. (2007) · Magnetic Resonance in Medicine · doi:10.1002/mrm.21347 · Cited by 293 · see citing works
Self-citation“Proper” Binormal ROC Curves: Theory and Maximum-Likelihood Estimation
Metz, C. E., & Pan, X. (1999) · Journal of Mathematical Psychology · doi:10.1006/jmps.1998.1218 · Cited by 275 · see citing works
Mazurowski, M. A., Zhang, J., Grimm, L. J., Yoon, S. C., & Silber, J. I. (2014) · Radiology · doi:10.1148/radiol.14132641 · Cited by 241 · see citing works
Youk, J. H., Son, E. J., Chung, J. I., Kim, J., & Kim, E. (2012) · European Radiology · doi:10.1007/s00330-012-2425-2 · Cited by 222 · see citing works
Chen, W., Giger, M. L., Bick, U., & Newstead, G. M. (2006) · Medical Physics · doi:10.1118/1.2210568 · Cited by 212 · see citing works
Self-citationBhooshan, N., Giger, M. L., Jansen, S. A., Li, H., Li, L., & Newstead, G. M. (2010) · Radiology · doi:10.1148/radiol.09090838 · Cited by 193 · see citing works
Self-citationKvistad, K. A., Rydland, J., Smethurst, H. B., et al. (2000) · European Radiology · doi:10.1007/s003300000370 · Cited by 192 · see citing works
Computerized interpretation of breast MRI: Investigation of enhancement‐variance dynamics
Chen, W., Giger, M. L., Lan, L., & Bick, U. (2004) · Medical Physics · doi:10.1118/1.1695652 · Cited by 187 · see citing works
Self-citationAshraf, A. B., Daye, D., Gavenonis, S. C., Mies, C., Feldman, M. D., Rosen, M. A., & Despina Kontos, B. (2014) · Radiology · doi:10.1148/radiol.14131375 · Cited by 151 · see citing works
Agner, S. C., Rosen, M. A., Englander, S. A., Tomaszewski, J. E., Feldman, M. D., Zhang, P. J., Mies, C., Schnall, M. D., & Madabhushi, A. (2014) · Radiology · doi:10.1148/radiol.14121031 · Cited by 139 · see citing works
Reliable and Computationally Efficient Maximum-Likelihood Estimation of “Proper” Binormal ROC Curves
Pesce, L. L., & Metz, C. E. (2007) · Academic Radiology · doi:10.1016/j.acra.2007.03.012 · Cited by 123 · see citing works
Magnetic resonance imaging for axillary staging in patients with breast cancer
Mortellaro, V. E., Marshall, J., Singer, L., et al. (2009) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.21802 · Cited by 122 · see citing works
Yamamoto, S., Han, W., Kim, Y., Du, L., Jamshidi, N., Huang, D., Kim, J. H., & Kuo, M. (2015) · Radiology · doi:10.1148/radiol.15142698 · Cited by 120 · see citing works
Pan, X., & Metz, C. E. (1997) · Academic Radiology · doi:10.1016/s1076-6332(97)80121-3 · Cited by 103 · see citing works
Yi, M., Mittendorf, E. A., Cormier, J. N., et al. (2011) · Journal of Clinical Oncology · doi:10.1200/jco.2011.38.3174 · Cited by 102 · see citing works
Personalizing Breast Cancer Staging by the Inclusion of ER, PR, and HER2
Bagaria, S. P., Ray, P., Sim, M., et al. (2013) · JAMA Surgery · doi:10.1001/jamasurg.2013.3181 · Cited by 97 · see citing works
Molecular Classification of Infiltrating Breast Cancer: Toward Personalized Therapy
Trop, I., LeBlanc, S. M., David, J., Lalonde, L., Tran‐Thanh, D., Labelle, M., & Khoury, M. M. E. (2014) · Radiographics · doi:10.1148/rg.345130049 · Cited by 90 · see citing works
Golden, D. I., Lipson, J. A., Telli, M. L., et al. (2013) · Journal of the American Medical Informatics Association · doi:10.1136/amiajnl-2012-001460 · Cited by 72 · see citing works
MRI phenotype of breast cancer: Kinetic assessment for molecular subtypes
Blaschke, E. M., & Abé, H. (2015) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.24884 · Cited by 71 · see citing works
MUSSURAKIS, S., Buckley, D. L., & Horsman, A. (1997) · Radiology · doi:10.1148/radiology.203.2.9114081 · Cited by 68 · see citing works
Radiologist’s Role in Breast Cancer Staging: Providing Key Information for Clinicians
Lee, S. C., Jain, P. A., Jethwa, S. C., et al. (2014) · Radiographics · doi:10.1148/rg.342135071 · Cited by 67 · see citing works
Can Breast MRI Predict Axillary Lymph Node Metastasis in Women Undergoing Neoadjuvant Chemotherapy
Javid, S. H., Segara, D., Lotfi, P., et al. (2010) · Annals of Surgical Oncology · doi:10.1245/s10434-010-0934-2 · Cited by 66 · see citing works
Makkat, S., Luypaert, R., Stadnik, T. W., et al. (2008) · Radiology · doi:10.1148/radiol.2492071147 · Cited by 65 · see citing works
Computerized Assessment of Breast Lesion Malignancy using DCE-MRI
Chen, W., Giger, M. L., Newstead, G. M., Bick, U., Jansen, S. A., Li, H., & Li, L. (2010) · Academic Radiology · doi:10.1016/j.acra.2010.03.007 · Cited by 47 · see citing works
Self-citationEvaluation of Tumor Angiogenesis with Contrast-Enhanced Dynamic Magnetic Resonance Mammography
Tunçbilek, N., Ünlü, E., Karakaş, H. M., et al. (2003) · The Breast Journal · doi:10.1046/j.1524-4741.2003.09508.x · Cited by 46 · see citing works
Computerized three-class classification of MRI-based prognostic markers for breast cancer
Bhooshan, N., Giger, M. L., Edwards, D. C., Yuan, Y., Jansen, S. A., Li, H., Li, L., Sattar, H. A., & Newstead, G. M. (2011) · Physics in Medicine and Biology · doi:10.1088/0031-9155/56/18/014 · Cited by 42 · see citing works
Self-citationLoiselle, C. R., Eby, P. R., Kim, J. N., et al. (2013) · Academic Radiology · doi:10.1016/j.acra.2013.10.001 · Cited by 21 · see citing works
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Panayides, A. S., Amini, A., Filipovic, N. D., Sharma, A., Tsaftaris, S. A., Young, A., Foran, D., Do, N., Golemati, S., Kurc, T., et al. (2020) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2020.2991043 · Cited by 713 · see citing works
Giger (2018) · doi:10.1016/j.jacr.2017.12.028 · Cited by 634 · see citing works
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Giardino, A., Gupta, S., Olson, E., Sepulveda, K., Lenchik, L., Ivanidze, J., Rakow-Penner, R., Patel, M. J., Subramaniam, R. M., & Ganeshan, D. (2017) · Academic Radiology · doi:10.1016/j.acra.2016.11.021 · Cited by 87 · see citing works
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Liu, Q., & Hu, P. (2022) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2021.102111 · Cited by 27 · see citing works
- Authors
- Burnside, E. S., Drukker, K., Li, H., Bonaccio, E., Zuley, M., Ganott, M., Net, J. M., Sutton, E. J., Brandt, K. R., Whitman, G. J., Conzen, S. D., Lan, L., Ji, Y., Zhu, Y., Jaffe, C. C., Huang, E. P., Freymann, J. B., Kirby, J. S., Morris, E. A., & Giger, M. L.
- Affiliations
- University of Wisconsin–Madison (US)
- University of Chicago (US)
- Roswell Park Comprehensive Cancer Center (US)
- University of Pittsburgh (US)
- University of Miami (US)
- Memorial Sloan Kettering Cancer Center (US)
- Mayo Clinic (US)
- The University of Texas MD Anderson Cancer Center (US)
- Department of Radiology University of Chicago Chicago Illinois
- Endeavor Health (US)
- National Institutes of Health (US)
- Corresponding author
- Morris, Elizabeth A.
- Giger, Maryellen L.
- ORCID
- Venue
- Cancer
- Publisher
- Wiley
- Published
- 2015-11-30
- Volume
- 122
- Issue
- 5
- Pages
- 748-757
- ISSN
- 0008-543X (ISSN-L)
- 1097-0142
- PMC
- PMC4764425
- OpenAlex
- W2184968530
- Cited by
- 71
- References
- 35
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 4 · 2023: 7 · 2022: 7 · 2021: 9 · 2020: 10 · 2019: 10 · 2018: 11 · 2017: 7 · 2016: 2
- FWCI
- 5.40
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Cancer (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institutes of Health (R01CA165229, R01LM010921, K24CA194251, T32 EB002103)
- Topics
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › MRI in cancer diagnosis
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Radiomics and Machine Learning in Medical Imaging
- Physical Sciences › Computer Science › Artificial Intelligence › AI in cancer detection
- Keywords
- breast cancer, breast MRI, lymph node status, tumor size, radiomics, The Cancer Imaging Archive
- MeSH terms
- Adult, Aged, Aged, 80 and over, Breast Neoplasms, Female, Humans, Image Processing, Computer-Assisted, Lymph Nodes, Magnetic Resonance Imaging, Middle Aged, Neoplasm Staging, Phenotype, Prognosis, ROC Curve, Carcinoma, Ductal, Breast, Carcinoma, Lobular
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