Comparative protein structure modeling using MODELLER

Cited by (710)

Items 101–200 of 710

1. Assessment of the <scp>CASP14</scp> assembly predictions
   Ozden, Burcu, Kryshtafovych, Andriy, Karaca, Ezgi · 2021 · Proteins: Structure, Function, and Bioinformatics
2. Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence
   Mayya Sedova, Lukasz Jaroszewski, Arghavan Alisoltani, Adam Godzik · 2020 · Bioinformatics
3. Molecular insights into atypical modes of β-arrestin interaction with seven transmembrane receptors
   Jagannath Maharana, Fumiya K. Sano, Parishmita Sarma, Manish Kumar Yadav, Longhan Duan, Tomasz Maciej Stępniewski, Madhu Chaturvedi, Ashutosh Kumar Ranjan, Vinay Singh, Sayantan Saha et al. · 2024 · Science
4. Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis
   Abhijith Makki, Petr Rada, Vojtěch Žárský, Sami Kereı̈che, Ľubomír Kováčik, Marián Novotný, Tobias Jores, Doron Rapaport, Jan Tachezy · 2019 · PLoS Biology
5. Expression of organic anion-transporting polypeptides 1B3, 1B1, and 1A2 in human pancreatic cancer reveals a new class of potential therapeutic targets
   Evangelos C. Briasoulis, Valentinos Kounnis, Loakim, Martin Svoboda, Andreas G. Tzakos, Ioannis Sainis, T. Thalhammer, Georg Steiner · 2011 · OncoTargets and Therapy
6. Distinct functions of POT1 proteins contribute to the regulation of telomerase recruitment to telomeres
   Peili Gu, Shuting Jia, Taylor Takasugi, Valerie M. Tesmer, Jayakrishnan Nandakumar, Yong Chen, Sandy S. Chang · 2021 · Nature Communications
7. PARAS: High-Accuracy Machine Learning of Substrate Specificities in Nonribosomal Peptide Synthetases
   Barbara R. Terlouw, Chuan Huang, David Meijer, José D D Cediel-Becerra, Ruolin He, Marlene L. Rothe, Matthew Jenner, Shanshan Zhou, Yu Zhang, Christopher D. Fage et al. · 2026 · JACS Au
8. Mapping the Allosteric Action of Antagonists A740003 and A438079 Reveals a Role for the Left Flipper in Ligand Sensitivity at P2X7 Receptors
   Rebecca C. Allsopp, Sudad A. Dayl, Anfal F. Bin Dayel, Ralf Schmid, Richard J. Evans · 2018 · Molecular Pharmacology
9. Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
   Handuo Shi, David A. Quint, Gregory M. Grason, Ajay Gopinathan A, Kerwyn Casey Huang · 2020 · Nature Communications
10. Fast Identification of Possible Drug Treatment of Coronavirus Disease -19 (COVID-19) Through Computational Drug Repurposing Study
    Junmei Wang · 2020 · ChemRxiv
11. Structure of the malaria vaccine candidate Pfs48/45 and its recognition by transmission blocking antibodies
    Ko, Kuang-Ting, Lennartz, Frank, Mekhaiel, David, Guloglu, Bora, Marini, Arianna, Deuker, Danielle J., Long, Carole A., Jore, Matthijs M., Miura, Kazutoyo, Biswas, Sumi et al. · 2022 · Nature Communications
12. Sequence Analysis and Structure Prediction of SARS‐CoV‐2 Accessory Proteins 9b and ORF14: Evolutionary Analysis Indicates Close Relatedness to Bat Coronavirus
    Chittaranjan Baruah, Papari Devi, Dhirendra Kumar Sharma · 2020 · BioMed Research International
13. A Complete Assessment of Dopamine Receptor- Ligand Interactions through Computational Methods
    Beatriz Bueschbell, Carlos A.V. Barreto, António J. Preto, Anke C. Schiedel, Irina Sousa Moreira · 2019 · Molecules
14. Selective cross‐linking of coinciding protein assemblies by in‐gel cross‐linking mass spectrometry
    Johannes F. Hevler, Marie Vestergaard Lukassen, Alfredo Cabrera‐Orefice, Susanne Arnold, Matti F. Pronker, Vojtěch Franc, Albert J. R. Heck · 2021 · The EMBO Journal
15. AKT mutant allele-specific activation dictates pharmacologic sensitivities
    Tripti Shrestha-Bhattarai, Tambudzai Shamu, Alexander N. Gorelick, Matthew T. Chang, Debyani Chakravarty, Elena I. Gavrila, Mark T.A. Donoghue, JianJong Gao, Swati Patel, Sizhi Paul Gao et al. · 2022 · Nature Communications
16. L-serine treatment in patients with <i>GRIN</i> -related encephalopathy: a phase 2A, non-randomized study
    Juliá-Palacios, Natalia, Olivella, Mireia, Sigatullina Bondarenko, Mariya, Ibáñez-Micó, Salvador, Muñoz-Cabello, Beatriz, Alonso-Luengo, Olga, Soto-Insuga, Víctor, García-Navas, Deyanira, Cuesta-Herraiz, Laura, Andreo-Lillo, Patricia et al. · 2024 · Brain
17. Comparative In Vitro and In Silico Analysis of the Selectivity of Indirubin as a Human Ah Receptor Agonist
    Faber, Samantha C., Soshilov, Anatoly A., Giani Tagliabue, Sara, Bonati, Laura, Denison, Michael S. · 2018 · International Journal of Molecular Sciences
18. Predicting ligand binding poses for low-resolution membrane protein models: Perspectives from multiscale simulations
    Jakob Schneider, Ksenia Korshunova, Francesco Musiani, Mercedes Alfonso‐Prieto, Alejandro Giorgetti, Paolo Carloni · 2018 · Biochemical and Biophysical Research Communications
19. Understanding Ligand Binding to G-Protein Coupled Receptors Using Multiscale Simulations
    Mercedes Alfonso‐Prieto, Luciano Navarini, Paolo Carloni · 2019 · Frontiers in Molecular Biosciences
20. Mechanism of MRX inhibition by Rif2 at telomeres
    Florian Roisné-Hamelin, Sabrina Pobiega, Kévin Jézéquel, Simona M. Miron, Jordane Dépagne, Xavier Veaute, Didier Busso, Marie‐Hélène Le Du, Isabelle Callebaut, Jean‐Baptiste Charbonnier et al. · 2021 · Nature Communications
21. A dual role in regulation and toxicity for the disordered N-terminus of the toxin GraT
    Ariel Talavera, Hedvig Tamman, Andres Ainelo, Albert Konijnenberg, San Hadži, Frank Sobott, Abel García-Pino, Rita Hõrak, Remy Loris · 2019 · Nature Communications
22. The RopGEF KARAPPO Is Essential for the Initiation of Vegetative Reproduction in Marchantia polymorpha
    Takuma Hiwatashi, Honzhen Goh, Yukiko Yasui, Li Quan Koh, Hideyuki Takami, Masataka Kajikawa, Hiroyuki Kirita, Takehiko Kanazawa, Naoki Minamino, Taisuke Togawa et al. · 2019 · Current Biology
23. Conformational spread and dynamics in allostery of NMDA receptors
    Ryan J. Durham, Nabina Paudyal, Elisa Cristina Carrillo, Nidhi Kaur Bhatia, David M. MacLean, Vladimír Berka, Drew M. Dolino, Alemayehu Abebe Gorfe, Vasanthi Jayaraman · 2020 · Proceedings of the National Academy of Sciences
24. A genetic approach reveals different modes of action of prefoldins
    Noel Blanco‐Touriñán, David Esteve-Bruna, Antonio Serrano-Mislata, Rosa María Esquinas-Ariza, Francesca Resentini, Javier Forment, Cristian Carrasco‐López, Claudio Novella-Rausell, Alberto Palacios‐Abella, Pedro Carrasco et al. · 2021 · PLANT PHYSIOLOGY
25. Immunoglobulin G-dependent inhibition of inflammatory bone remodeling requires pattern recognition receptor Dectin-1
    Michaela Seeling, Matthias Pöhnl, Sibel Kara, Nathalie Horstmann, Carolina Riemer, Miriam Wöhner, Chunguang Liang, Christin Brückner, Patrick Eiring, Anja Werner et al. · 2023 · Immunity
26. KAP, the Accessory Subunit of Kinesin-2, Binds the Predicted Coiled-Coil Stalk of the Motor Subunits
    Harinath Doodhi, Debnath Ghosal, Mahalakshmi Krishnamurthy, Swadhin Chandra Jana, Divya Shamala, Anirban Bhaduri, Ramanathan Sowdhamini, Krishanu Ray · 2009 · Biochemistry
27. Research Techniques Made Simple: Molecular Docking in Dermatology - A Foray into In Silico Drug Discovery
    Naiem Tony Issa, Evangelos V. Badiavas, Stephan C. Schürer · 2019 · Journal of Investigative Dermatology
28. Deimmunization of flagellin adjuvant for clinical application
    Joon Haeng Rhee, Koemchhoy Khim, Sao Puth, Yoonjoo Choi, Shee Eun Lee · 2023 · Current Opinion in Virology
29. Allosteric KRas4B Can Modulate SOS1 Fast and Slow Ras Activation Cycles
    Tsung-Jen Liao, Hyunbum Jang, David Fushman, Ruth Nussinov · 2018 · Biophysical Journal
30. Elucidation of WW domain ligand binding specificities in the Hippo pathway reveals STXBP4 as YAP inhibitor
    Rebecca Elizabeth Vargas, Vy Thuy Duong, Han Han, ALBERT TA, Yuxuan Chen, Shiji Zhao, Bing Yang, Gayoung Seo, Kimberly Chuc, Sunwoo Oh et al. · 2019 · The EMBO Journal
31. Agonist Binding to Chemosensory Receptors: A Systematic Bioinformatics Analysis
    Fabrizio Fierro, Eda Suku, Mercedes Alfonso‐Prieto, Alejandro Giorgetti, Sven Cichon, Paolo Carloni · 2017 · Frontiers in Molecular Biosciences
32. Integrated Molecular Characterization of Gastrointestinal Stromal Tumors (GIST) Harboring the Rare D842V Mutation in PDGFRA Gene
    Valentina Indio, Annalisa Astolfi, Giuseppe Tarantino, Milena Urbini, Janice Patterson, Margherita Nannini, Maristella Saponara, Lidia Gatto, Donatella Santini, Ítalo Faria do Valle et al. · 2018 · International Journal of Molecular Sciences
33. FerA is a Membrane-Associating Four-Helix Bundle Domain in the Ferlin Family of Membrane-Fusion Proteins
    Faraz M. Harsini, Sukanya Chebrolu, Kerry L. Fuson, Mark Andrew White, Anne M. Rice, Roger Bryan Sutton · 2018 · Scientific Reports
34. Folliculin variants linked to Birt-Hogg-Dubé syndrome are targeted for proteasomal degradation
    Lene Clausen, Amelie Stein, Martin Grønbæk-Thygesen, Lasse Nygaard, Cecilie L. Søltoft, Sofie Vincents Nielsen, Michael Lisby, Tommer Ravid, Kresten Lindorff‐Larsen, Rasmus Hartmann‐Petersen · 2020 · PLoS Genetics
35. Structure of Ycf1p reveals the transmembrane domain TMD0 and the regulatory region of ABCC transporters
    Sarah C. Bickers, Samir Benlekbir, John L. Rubinstein, Voula Kanelis · 2021 · Proceedings of the National Academy of Sciences
36. Immunity functions of Arabidopsis pathogenesis‐related 1 are coupled but not confined to its C‐terminus processing and trafficking
    Tamara Pečenková, Přemysl Pejchar, Tomáš Moravec, Matěj Drs, Samuel Haluška, Jiří Šantrůček, Andrea Potocká, Viktor Žárský, Martin Potocký · 2022 · Molecular Plant Pathology
37. Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
    Alena Stsiapanava, Chenrui Xu, Shunsuke Nishio, Ling Han, Nao Yamakawa, Marta Carroni, Kathryn Tunyasuvunakool, John Jumper, Daniele de Sanctis, Bin Wu et al. · 2022 · Nature Structural & Molecular Biology
38. Virtual Screening of Inhibitors Against Spike Glycoprotein of 2019 Novel Corona Virus: A Drug Repurposing Approach
    Kanishka Sithira Senathilake, Sameera R. Samarakoon, Kamani Hemamala Tennekoon · 2020 · Preprints.org
39. Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
    Jayoung Ryu, Sam Barkal, Tian Yu, Martin Jankowiak, Yunzhuo Zhou, Matthew Francoeur, Quang Vinh Phan, Zhijian Li, Manuel Tognon, Lara Brown et al. · 2024 · Nature Genetics
40. Ensemble docking to difficult targets in early‐stage drug discovery: Methodology and application to fibroblast growth factor 23
    Hector Adam Velazquez, Demian Riccardi, Zhousheng Xiao, L. Darryl Quarles, Charles Ryan Yates, Jerome Y. Baudry, Jeremy C. Smith · 2017 · Chemical Biology & Drug Design
41. MYORG is associated with recessive primary familial brain calcification
    David Arkadir, Alexander Lossos, Dolev Rahat, Muneer Abu Snineh, Ora Schueler‐Furman, Silvia Nitschke, Berge Arakel Minassian, Yair Sadaka, Israela Lerer, Yuval Tabach et al. · 2018 · Annals of Clinical and Translational Neurology
42. In-silicointeraction studies suggest RND efflux pump mediates polymyxin resistance inAcinetobacter baumannii
    Privita Verma, Pramila Maurya, Monalisa Tiwari, Vishvanath Tiwari · 2017 · Journal of Biomolecular Structure and Dynamics
43. In silico Analysis, Molecular Docking, Molecular Dynamic, Cloning, Expression and Purification of Chimeric Protein in Colorectal Cancer Treatment
    Hassan Dana, Ghanbar Mahmoodi Chalbatani, Elahe Gharagouzloo, Seyed Rouhollah Miri, Fereidoon Memari, Reza Rasoolzadeh, Mohammad Reza Zinatizadeh, Peyman Kheirandish Zarandi, Vahid Marmari · 2020 · Drug Design Development and Therapy
44. Structural Insights into the Interactions of Digoxin and Na+/K+-ATPase and Other Targets for the Inhibition of Cancer Cell Proliferation
    Yulin Ren, Sijin Wu, Joanna E. Burdette, Xiaolin Cheng, Alan Douglas Kinghorn · 2021 · Molecules
45. A Fungal Secretome Adapted for Stress Enabled a Radical Wood Decay Mechanism
    Jesús D. Castaño, Jiwei Zhang, Mowei Zhou, Chia-Feng Tsai, Joon‐Yong Lee, Carrie Nicora, Jonathan S. Schilling · 2021 · mBio
46. Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation
    Jiale Liang, Asuka Inoue, Tatsuya Ikuta, Ruixue Xia, Na Wang, Kouki Kawakami, Zhenmei Xu, Qian Yu, Xinyan Zhu, Anqi Zhang et al. · 2023 · Nature Communications
47. Genome-wide in silico identification of LysM-RLK genes in potato (Solanum tuberosum L.)
    Farhad Nazarian Firouzabadi, Sripad Joshi, Huali Xue, Ajjamada C. Kushalappa · 2019 · Molecular Biology Reports
48. Differential binding affinity of tau repeat region R2 with neuronal-specific β-tubulin isotypes
    Vishwambhar Vishnu Bhandare, Bajarang Vasant Kumbhar, Ambarish Kunwar · 2019 · Scientific Reports
49. Neutralizing Antibody Induction by HIV-1 Envelope Glycoprotein SOSIP Trimers on Iron Oxide Nanoparticles May Be Impaired by Mannose Binding Lectin
    Rajesh P. Ringe, Victor M. Cruz Portillo, Pia Dosenovic, Thomas J. Ketas, Gabriel Ozorowski, Bartek Nogal, Lautaro G. Perez, Celia C. LaBranche, Jillian Lim, Erik Francomano et al. · 2019 · Journal of Virology
50. Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein
    Lenka Stejskal, William Lees, David S. Moss, Machaela Palor, Richard J. Bingham, Adrian J. Shepherd, Joe Grove · 2020 · PLoS Computational Biology
51. Computational Design of Peptide Assemblies
    Jiwei Min, Xi Rong, Jiaxing Zhang, Rongxin Su, Yuefei Wang, Wei Dong Qi · 2024 · Journal of Chemical Theory and Computation
52. Fourteen new mutations of BCKDHA, BCKDHB and DBT genes associated with maple syrup urine disease (MSUD) in Malaysian population
    Ernie Zuraida Ali, Lock Hock Ngu · 2018 · Molecular Genetics and Metabolism Reports
53. Genomics, epigenomics and pharmacogenomics of familial hypercholesterolemia (FHBGEP): A study protocol
    Jéssica Bassani Borges, Victor Fernandes de Oliveira, Gláucio Monteiro Ferreira, Bruna Los, Thais Kristini Almendros Barbosa, Elisangela da Silva Rodrigues Marçal, Carolina Dagli-Hernandez, Renata Caroline Costa de Freitas, Raul Hernandes Bortolin, Augusto Akira Mori et al. · 2020 · Research in Social and Administrative Pharmacy
54. Antidiabetic lanostane triterpenoids from the fruiting bodies of Ganoderma weberianum
    Li Yang, De-Xian Kong, Na Xiao, Qing‐Yun Ma, Qingyi Xie, Jiao-Cen Guo, Chun Ying Deng, Hai-Xia Ma, Yan Hua, Hao‐Fu Dai et al. · 2022 · Bioorganic Chemistry
55. Functional and structural characteristics of HLA-B*13:01-mediated specific T cells reaction in dapsone-induced drug hypersensitivity
    Haiqin Jiang, Chuang‐Wei Wang, Zhaoxi Wang, Yufei Dai, Yanping Zhu, Yun‐Shien Lee, Yang Cao, Wen‐Hung Chung, Songying Ouyang, Hongsheng Wang · 2022 · Journal of Biomedical Science
56. Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia
    Hormos Salimi Dafsari, Rosanne Sprute, Gilbert Wunderlich, Hülya‐Sevcan Daimagüler, Ezgi Karaca, Adriana Contreras, Kerstin Becker, Mira Schulze-Rhonhof, Karl Ludwig Kiening, Tülay Karakulak et al. · 2019 · Journal of Human Genetics
57. Uncoupling sodium channel dimers restores the phenotype of a pain‐linked Na v 1.7 channel mutation
    Annika H. Rühlmann, Jannis Körner, Ralf Hausmann, Nikolay Bebrivenski, Christian Neuhof, Silvia Detro‐Dassen, Petra A. I. Hautvast, Carène Benasolo, Jannis Meents, Jan‐Philipp Machtens et al. · 2020 · British Journal of Pharmacology
58. Highly efficient production of rebaudioside D enabled by structure-guided engineering of bacterial glycosyltransferase YojK
    Baodang Guo, Xiaodong Hou, Yan Zhang, Zhiwei Deng, Ping Qian, Kai Fu, Zhenbo Yuan, Yijian Rao · 2022 · Frontiers in Bioengineering and Biotechnology
59. The Interaction of Munc18-1 Helix 11 and 12 with the Central Region of the VAMP2 SNARE Motif Is Essential for SNARE Templating and Synaptic Transmission
    Timon André, Jessica Classen, Philipp Brenner, Matthew J. Betts, Bernhard Dörr, Susanne Kreye, Birte Zuidinga, Marieke Meijer, Robert B. Russell, Matthijs Verhage et al. · 2020 · eNeuro
60. Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses
    Marta Pérez-Illana, Marta Martínez, Gabriela N. Condezo, Mercedes Hernando‐Pérez, Casandra Mangroo, Martha Brown, R. Marabini, Carmen San Martı́n · 2021 · Science Advances
61. Understanding the Polypharmacological Profiles of Triple Reuptake Inhibitors by Molecular Simulation
    Gao Tu, Tingting Fu, Fengyuan Yang, Jingyi Yang, Zhao Zhang, Xiaojun Yao, Weiwei Xue, Feng Zhu · 2021 · ACS Chemical Neuroscience
62. Molecular Evolutionary Analyses of the RNA-Dependent RNA Polymerase Region in Norovirus Genogroup II
    Keita Ozaki, Yuki Matsushima, Koo Nagasawa, Takumi Motoya, Akihide Ryo, Makoto Kuroda, Kazuhiko Katayama, Hirokazu Kimura · 2018 · Frontiers in Microbiology
63. Computational approaches for drug discovery against trypanosomatid-caused diseases
    Claudio Alejandro Pereira, Melisa Sayé, Chantal Reigada, Ariel Mariano Silber, Guillermo R. Labadié, Mariana Reneé Miranda, Edward A. Valera-Vera · 2020 · Parasitology
64. Structural basis for antiepileptic drugs and botulinum neurotoxin recognition of SV2A
    Atsushi Yamagata, Kaori Ito, Takehiro Suzuki, Naoshi Dohmae, Tohru Terada, Mikako Shirouzu · 2024 · Nature Communications
65. CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody–Antigen Interface
    Yuhang Liu, Junhua Pan, Simon Jenni, Donald D. Raymond, Timothy M. Caradonna, Khoi T. Do, Aaron G. Schmidt, Stephen C. Harrison, Nikolaus Grigorieff · 2017 · Journal of Molecular Biology
66. Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase
    Carlos Pablo Modenutti, Juan I. Blanco Capurro, Roberta Ibba, Dominic S. Alonzi, Mauro N. Song, Snežana Vasiljević, Abhinav Kumar, Anu V. Chandran, Gábor Tax, Lucia Marti et al. · 2020 · Structure
67. Temperature effect on the SARS-CoV-2: A molecular dynamics study of the spike homotrimeric glycoprotein
    Didac Martí, Juan Torras, Oscar Bertrán, Pau Turón, Carlos Alemán · 2021 · Computational and Structural Biotechnology Journal
68. The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity
    Zhenwei Song, Thomas Gremminger, Gatikrushna Singh, Yi Cheng, Jun Li, Liming Qiu, Juan Ji, Margaret J. Lange, Xiaobing Zuo, Shi‐Jie Chen et al. · 2021 · Nucleic Acids Research
69. Structure prediction of transferrin receptor protein 1 (TfR1) by homology modelling, docking, and molecular dynamics simulation studies
    Maha Ateeq AL-Refaei, Rania Marwan Makki, Hani Mohammed Ali · 2020 · Heliyon
70. Computational drug re-purposing targeting the spike glycoprotein of SARS-CoV-2 as an effective strategy to neutralize COVID-19
    Himanshu G. Toor, Devjani I. Banerjee, Soumya Lipsa Rath, Siddhi A. Darji · 2020 · European Journal of Pharmacology
71. Functional Characterization of a Cucumber (Cucumis sativus L.) Vacuolar Invertase, CsVI1, Involved in Hexose Accumulation and Response to Low Temperature Stress
    Zili Feng, Fenghua Zheng, Silin Wu, Rui Li, Yue Li, Jiaxin Zhong, Hongbo Zhao · 2021 · International Journal of Molecular Sciences
72. Dynamical interplay between the human high-affinity copper transporter hCtr1 and its cognate metal ion
    Gulshan R. Walke, Jana Aupič, Hadeel Kashoua, Pavel Janoš, Shelly Meron, Yulia Shenberger, Zena Qasem, Lada Gevorkyan‐Airapetov, Alessandra Magistrato, Sharon Ruthstein · 2022 · Biophysical Journal
73. Structural Insights into the Catalytic Cycle of a Bacterial Multidrug ABC Efflux Pump
    Waqas Javed, Sylvain Vallet, Marie-Pierre Clement, Aline Le Roy, Martine Moulin, Michael Haertlein, Cécile Breyton, Odile Burlet‐Schiltz, Julien Marcoux, Cédric Orelle et al. · 2022 · Journal of Molecular Biology
74. Molecular Insights into the Differential Dynamics of SARS-CoV-2 Variants of Concern (VOC)
    Nabanita Mandal, Aditya Kumar Padhi, Soumya Lipsa Rath · 2021 · Journal of Molecular Graphics and Modelling
75. Role of cytochrome P450 2B sequence variation and gene copy number in facilitating dietary specialization in mammalian herbivores
    Smiljka Kitanovic, Teri J. Orr, Daniel Spalink, Granger B. Cocke, Katharina Schramm, Paul Ross Wilderman, James R. Halpert, M. Denise Dearing · 2018 · Molecular Ecology
76. A Novel Cold Active Esterase from a Deep Sea Sponge Stelletta normani Metagenomic Library
    Erik Borchert, Joseph Selvin, Seghal Kiran, Stephen A. Jackson, Fergal O’Gara, Alan D. W. Dobson · 2017 · Frontiers in Marine Science
77. Functional analysis of phospholipase Dδ family in tobacco pollen tubes
    Přemysl Pejchar, Juraj Sekereš, Ondřej Novotný, Viktor Žárský, Martin Potocký · 2020 · The Plant Journal
78. Both intra and inter-domain interactions define the intrinsic dynamics and allosteric mechanism in DNMT1s
    Zhongjie T. Liang, Yu Zhu, Jie Long, Fei Ye, Guang Hu · 2020 · Computational and Structural Biotechnology Journal
79. Biochemical characterisation of a collagenase from Bacillus cereus strain Q1
    Isabel J. Hoppe, Hans Brandstetter, Esther Schönauer · 2021 · Scientific Reports
80. Novel peptides with xanthine oxidase inhibitory activity identified from macadamia nuts: integrated in silico and in vitro analysis
    Lei Zhao, Xin Ai, Fei Pan, Liang Zhao, Liang Zhao, Shengbao Cai, Xiaoning Tang · 2022 · European Food Research and Technology
81. Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity
    Yuichi Mitsui, Tatsuya Suzuki, Kanako Kuniyoshi, Jun Inamo, Kensuke Yamaguchi, Mariko Komuro, Junya Watanabe, Mio Edamoto, Songling Li, Tsukasa Kouno et al. · 2023 · Immunity
82. Solid-State NMR Evidence for β-Hairpin Structure within MAX8 Designer Peptide Nanofibers
    Sarah R. Leonard, Ashley R. Cormier, Xiaodong Pang, Maxwell I. Zimmerman, Huan‐Xiang Zhou, Anant K. Paravastu · 2013 · Biophysical Journal
83. Identification and prioritisation of potential vaccine candidates using subtractive proteomics and designing of a multi-epitope vaccine against Wuchereria bancrofti
    Murali Aarthy, G Navaneetha Pandiyan, Rajaiah Paramasivan, Ashwani Kumar, Bhavna Gupta · 2024 · Scientific Reports
84. Over‐expression, secretion, biochemical characterisation, and structure analysis of Bacillus subtilis aminopeptidase
    Xinxing Gao, Wenjing Cui, Yaping Tian, Zhemin Zhou · 2013 · Journal of the Science of Food and Agriculture
85. The Molecular Basis for Escherichia coli O157:H7 Phage FAHEc1 Endolysin Function and Protein Engineering to Increase Thermal Stability
    Michael J. Love, David Coombes, Sarah H. Manners, Gayan S. Abeysekera, Craig Billington, Renwick C. J. Dobson · 2021 · Viruses
86. Naturally occurring cancer-associated mutations disrupt oligomerization and activity of protein arginine methyltransferase 1 (PRMT1)
    Owen M. Price, Abhishek Thakur, Ariana Ortolano, Arianna Towne, Caroline Velez, Orlando Acevedo, Joan M. Hevel · 2021 · Journal of Biological Chemistry
87. Substrate binding-induced conformational transitions in the omega-3 fatty acid transporter MFSD2A
    Shana Bergman, Rosemary J. Cater, Ambrose Plante, Filippo Mancia, George Khelashvili · 2023 · Nature Communications
88. Design and characterization of a new hybrid peptide from LL-37 and BMAP-27
    Yara R. Al Tall, Ahmad Abualhaijaa, Mohammad Alsaggar, Ammar M. Almaaytah, Majed M. Masadeh, Karem Hasan Alzoubi · 2019 · Infection and Drug Resistance
89. Natural Product Inspired Novel Indole based Chiral Scaffold Kills Human Malaria Parasites via Ionic Imbalance Mediated Cell Death
    Poonam Dangi, Ravi Jain, Rajanikanth Mamidala, Vijeta Sharma, Shalini Agarwal, Chandramohan Bathula, Maringanti Thirumala Chary, Subhabrata Sen, Shailja Singh · 2019 · Scientific Reports
90. HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy
    Dinler A. Antunes, Jayvee R. Abella, Sarah Hall-Swan, Didier Devaurs, Anja Conev, Mark Moll, Gregory A. Lizee, Lydia E. Kavraki · 2020 · JCO Clinical Cancer Informatics
91. Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins
    Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Mayya Sedova, Adam Godzik · 2020 · PLoS ONE
92. PIK3CA hotspot mutations p. H1047R and p. H1047L sensitize breast cancer cells to thymoquinone treatment by regulating the PI3K/Akt1 pathway
    Ju Zhou, Saber İmani, Marzieh Dehghan Shasaltaneh, Shuguang Liu, Tao Lü, Junjiang Fu · 2021 · Molecular Biology Reports
93. Post-translational modification patterns on β-myosin heavy chain are altered in ischemic and nonischemic human hearts
    Maicon Landim-Vieira, Matthew Carter Childers, Amanda L. Wacker, Michelle Rodriquez Garcia, Huan He, Rakesh Singh, Elizabeth A. Brundage, Jamie R. Johnston, Bryan A. Whitson, P. Bryant Chase et al. · 2022 · eLife
94. DNA recognition by Arabidopsis transcription factors ABI 3 and NGA 1
    Giedrius Sasnauskas, E. Manakova, Kęstutis Lapėnas, Kotryna Kauneckaitė, Virginijus Šikšnys · 2018 · FEBS Journal
95. Insilico Alpha-Helical Structural Recognition of Temporin Antimicrobial Peptides and Its Interactions with Middle East Respiratory Syndrome-Coronavirus
    Sathish Kumar Marimuthu, Krishnanand Nagarajan, Sathish Kumar Perumal, P. Selvamani, S. Latha · 2019 · International Journal of Peptide Research and Therapeutics
96. Integration of Cryo-EM Model Building Software in Scipion
    Marta Martínez, Amaya Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Roberto Melero, Ana Cuervo, Pablo Conesa, Laura del Caño, Yunior C. Fonseca, Rubén Sánchez-García et al. · 2020 · Journal of Chemical Information and Modeling
97. Inter-species variation in monovalent anion substrate selectivity and inhibitor sensitivity in the sodium iodide symporter (NIS)
    Susanna C. Concilio, Hristina R. Zhekova, Sergei Yu. Noskov, Stephen J. Russell · 2020 · PLoS ONE
98. In silico and in vitro screening for potential anticancer candidates targeting GPR120
    Ajay Pal, James F. Curtin, Gemma K. Kinsella · 2020 · Bioorganic & Medicinal Chemistry Letters
99. First insights into the structural features of Ebola virus methyltransferase activities
    Coralie Valle, Baptiste Martin, François Ferrón, V. Roig-Zamboni, Aline Desmyter, Françoise Debart, Jean‐Jacques Vasseur, Bruno Canard, Bruno Coutard, Étienne Decroly · 2020 · Nucleic Acids Research
100. Pathogenic IgG4 autoantibodies from endemic pemphigus foliaceus recognize a desmoglein-1 conformational epitope
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