Comparative protein structure modeling using MODELLER

Cited by (710)

Items 501–600 of 710

1. Computational and experimental assessment of key interdomain residues controlling the fold‐switch of RfaH
   Cyndi Tabilo‐Agurto, Javiera Reyes, Irina Artsimovitch, César A. Ramírez‐Sarmiento · 2025 · Protein Science
2. Structural Modeling and Ligand-Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search
   Yuko Tsuchiya, Kentaro Tomii · 2020 · Methods in molecular biology
3. Methods to study the effect of solution variables on the conformational dynamics of intrinsically disordered proteins
   Hakan Alıcı, Orkun Hasekioğlu, Vladimir Nikolaevich Uversky, Orkid Coskuner‐Weber · 2022 · Elsevier eBooks
4. A somatic mutation in moesin drives progression into acute myeloid leukemia
   Ouyang Yuan, Amol Sanjay Ugale, Tommaso De Marchi, Vimala Anthonydhason, Anna Konturek-Cieśla, Haixia Wan, Mohamed Eldeeb, Caroline Drabe, Maria Jassinskaja, Jenny Hansson et al. · 2022 · Science Advances
5. Application of Novel Microbial Consortia for Environmental Site Remediation and Hazardous Waste Management Toward Low- and High-Density Polyethylene and Prioritizing the Cost-Effective, Eco-friendly, and Sustainable Biotechnological Intervention
   Sinosh Skariyachan, Meghna Manjunath, Apoorva Shankar, Nikhil Bachappanavar, Amulya A. Patil · 2019 · Springer eBooks
6. Biochemical and structural properties of a lectin purified from seeds of the legume Parkia nitida Miq.
   Benildo Sousa Cavada, Alfa Umaro Bari, Vanir Reis Pinto‐Junior, Messias Vital Oliveira, Paula Ingrid Maia Machado, Luiz Augusto Gomes de Souza, Kyria Santiago Nascimento, Vinicius José Silva Osterne · 2023 · Process Biochemistry
7. Exploring the structural assembly of rice ADP-glucose pyrophosphorylase subunits using MD simulation
   Maharana, Jitendra, Hwang, Seon-Kap, Singha, Dhanawantari L., Panda, Debashis, Singh, Salvinder, Okita, Thomas W., Modi, Mahendra Kumar · 2024 · Journal of Molecular Graphics and Modelling
8. Deafness DFNB128 Associated with a Recessive Variant of Human MAP3K1 Recapitulates Hearing Loss of Map3k1-Deficient Mice
   Rabia Faridi, Rizwan Yousaf, Sayaka Inagaki, Rafal T. Olszewski, Shoujun Gu, Robert J. Morell, Elizabeth A. H. Wilson, Ying Xia, Tanveer Ahmed Qaiser, Muhammad Rashid et al. · 2024 · Genes
9. Identification of Benzothiophene-Derived Inhibitors of Flaviviruses by Targeting RNA-Dependent RNA Polymerase
   Leah Liu Wang, Shazeed-Ul Karim, Aidan Hand, Ryan Brunkhorst, Makenna Patersen, Sarah Altman, Yi Liu, Luwen Zhang, Fengwei Bai, Shi-Hua Xiang · 2025 · Viruses
10. An alternate mode of oligomerization for E. coli SecA
    Aliakbar Khalili Yazdi, Grant C. Vezina, Brian H. Shilton · 2017 · Scientific Reports
11. Amsacta moorei entomopoxvirus encodes a functional heparin-binding glycosyltransferase (AMV248)
    Cihan İnan, Hacer Muratoğlu, Basil M. Arif, Zihni Demirbağ · 2018 · Virus Genes
12. SARS-Arena: Sequence and Structure-Guided Selection of Conserved Peptides from SARS-related Coronaviruses for Novel Vaccine Development
    Maurício Rigo, Romanos Fasoulis, Anja Conev, Sarah Hall-Swan, Dinler A. Antunes, Lydia E. Kavraki · 2022 · Frontiers in Immunology
13. In silico characterization of cysteine-stabilized αβ defensins from neglected unicellular microeukaryotes
    Marcus Vinicius Xavier Senra · 2023 · BMC Microbiology
14. In Silico Analysis of Pyeongwi-San Involved in Inflammatory Bowel Disease Treatment Using Network Pharmacology, Molecular Docking, and Molecular Dynamics
    Chang-Hwan Bae, Hee-Young Kim, Ji Eun Seo, Hanul Lee, Seungtae Kim · 2023 · Biomolecules
15. Coarse-grained molecular dynamics-guided immunoinformatics to explain the binder and non-binder classification of Cytotoxic T-cell epitope for SARS-CoV-2 peptide-based vaccine discovery
    Muhammad Yusuf, Wanda Destiarani, Wahyu Widayat, Yosua Yosua, Gilang Gumilar, Angelica Shalfani Tanudireja, Fauzian Giansyah Rohmatulloh, Farhan Azhwin Maulana, Umi Baroroh, Ari Hardianto et al. · 2023 · PLoS ONE
16. Unraveling the Dual Inhibitory Mechanism of Compound 22ac: A Molecular Dynamics Investigation into ERK1 and ERK5 Inhibition in Cancer
    Elliasu Yakubu Salifu, Mbuso A. Faya, James Abugri, Pritika Ramharack · 2024 · Computation
17. Exhaustive computational studies on pyrimidine derivatives as GPR119 agonist for the development of compounds against NIDDM
    Priyanshu Nema, Shivangi Agarwal, Shivam Kumar Kori, Ajay Kumar, Varsha Kashaw, Vandana Soni, Arun K. Iyer, Sushil K. Kashaw · 2024 · Future Journal of Pharmaceutical Sciences
18. Receptors P1 and P2 as Targets for Drug Therapy in Humans
    Robson Faria · 2019 · IntechOpen eBooks
19. How does α 1 Histidine102 affect the binding of modulators to α 1 β 2 γ 2 GABA A receptors? molecular insights from in silico experiments
    María Julia Amundarain, Ernesto R. Caffarena, Marcelo D. Costabel · 2021 · Physical Chemistry Chemical Physics
20. Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease
    Daisuke Kuroda, Kouhei Tsumoto · 2021 · Biophysics and Physicobiology
21. Bioinformatic tools to understand structure and function of plant proteins
    Ahmad Abu Turab Naqvi, Usha Kiran, Malik Zainul Abdin, Md. Imtaiyaz Hassan · 2020 · Elsevier eBooks
22. Transport Dynamics of MtrD: An RND Multidrug Efflux Pump from Neisseria gonorrhoeae
    Lauren A McCormick, Sarah B. Mertz, Chanyang Park, John G. Wise · 2021 · Biochemistry
23. Homology modeling and substrate binding studies of human P-glycoprotein
    Jutarat Pimthon, Rawinsiwat Dechaanontasup, Chanapa Ratanapiphop, Chalanrat Phromprasert · 2017 · Pharmaceutical Sciences Asia
24. Structural Basis of CD4 Downregulation by HIV-1 Nef
    Yonghwa Kwon, Robyn M. Kaake, Ignacia Echeverria, Marissa Suarez, Charlotte A. Stoneham, Peter W. Ramirez, Jacob Kress, Rajendra Pal Singh, Andrej Šali, Nevan J. Krogan et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
25. Identification of Residues Potentially Involved in Optical Shifts in the Water-Soluble Chlorophyll a -Binding Protein through Molecular Dynamics Simulations
    Martina Mai, Valter Zazubovich, Rachael A. Mansbach · 2024 · The Journal of Physical Chemistry B
26. On the use of dioxane as reference for determination of the hydrodynamic radius by NMR spectroscopy
    Emil E. Tranchant, Francesco Pesce, Nina L. Jacobsen, Catarina B. Fernandes, Birthe Brandt Kragelund, Kresten Lindorff‐Larsen · 2024 · Biophysical Journal
27. A transphyletic study of metazoan β-catenin protein complexes
    Ivan Mbogo, Chihiro Kawano, Ryotaro Nakamura, Yuko Tsuchiya, Alejandro Villar‐Briones, Yoshitoshi Hirao, Y. Yasuoka, Eisuke Hayakawa, Kentaro Tomii, Hiroshi Watanabe · 2024 · Zoological Letters
28. Identifying potent inhibitors for Mycobacterium tuberculosis MabA (FabG1)
    Debashis Panda, Jitendra Maharana, Arjun Sharma, Sachin B. Wadavrao, Abhishek Chowdhury, Monjur Ahmed Laskar, Mahendra Kumar Modi, Manabendra Dutta Choudhury · 2025 · Molecular Diversity
29. 3,4-Dihydroxyphenylacetaldehyde synthase evolved an ordered structure to deliver oxygen to pyridoxal 5’-phosphate for cuticle assembly in the mosquito Aedes aegypti
    Jing Chen, Christopher John Vavricka, Shuangshuang Wei, Yasumoto Nakazawa, Yuri Matsumoto, Huaqing Chen, Yu Tang, Jing Liang, Jiukai Chen, Yi Huang et al. · 2025 · Nature Communications
30. Chemogenomic approach to identifying nematode chemoreceptor drug targets in the entomopathogenic nematode Heterorhabditis bacteriophora
    Reeham Motaher, Emilia Grill, Elise L. McKean, Eric Kenney, Ioannis Eleftherianos, John M. Hawdon, Damien M. O’Halloran · 2021 · Computational Biology and Chemistry
31. A novel and robust 3-quinuclidinone reductase from Kaistia algarum for efficient synthesis of (R)-3-quinuclidinol without external cofactor
    Tianwei Luo, Zhe Dou, Zewen Sun, Xiaoyu Chen, Ye Ni, Guochao Xu · 2021 · Molecular Catalysis
32. Molecular basis for substrate recognition and septum cleavage by AtlA, the major N-acetylglucosaminidase of Enterococcus faecalis
    V. Roig-Zamboni, Sarah Barelier, Robert Dixon, Nicola F. Galley, Amani Ghanem, Phong Quoc Nguyen, Héloize Cahuzac, Bartłomiej Salamaga, Peter J. Davis, Yves Bourne et al. · 2022 · Journal of Biological Chemistry
33. Rare Catechol- O -methyltransferase Missense Variants Are Structurally Unstable Proteasome Targets
    Fia B. Larsen, Matteo Cagiada, Jonas Dideriksen, Amelie Stein, Kresten Lindorff‐Larsen, Rasmus Hartmann‐Petersen · 2023 · Biochemistry
34. Protein Modelling Insight to the Poor Sensitivity of Chikungunya Diagnostics on Indonesia’s Chikungunya Virus
    Bevi Lidya, Muhammad Yusuf, Umi Baroroh, Korry Novitriani, Bachti Alisjahbana, Iman Rahayu, Toto Subroto · 2023 · Indonesian Journal of Chemistry
35. Computational design of scFv anti-receptor binding domain of SARS-CoV-2 spike protein based on antibody S230 anti-SARS-CoV-1
    Ade Rizqi Ridwan Firdaus, Umi Baroroh, Taufik Ramdani Tohari, Ari Hardianto, Toto Subroto, Muhammad Yusuf · 2023 · Journal of Biomolecular Structure and Dynamics
36. Unique Substrate Recognition and Sodium–Substrate Binding Stoichiometry in a Bacterial Serotonin Transporter, TuriSERT
    Mu Li, Xintong Zhang, Sixiang Chen, Hanhe Liu, Yuan‐Wei Zhang · 2023 · International Journal of Molecular Sciences
37. Enhanced molecular stability of ApxII antigen during secretion in Corynebacterium glutamicum by rational design
    Xiuxia Liu, Shujie Yang, Manman Sun, Xiong Gao, Ziming Fan, Yankun Yang, Pei Zheng, Chunli Liu, Ye Li, Zhonghu Bai · 2024 · Journal of Biotechnology
38. Synthesis of exocyclic enaminone-based thiohydantoins as potent antifungal agents
    Ulises F. Reyes-González, Edson Barrera, Daniela Martínez-López, R. Israel Hernández‐Benitez, Julio López, Omar Gómez‐García, Dulce Andrade-Pavón, Lourdes Villa‐Tanaca, Paola Castillo-Juárez, Francisco Delgado et al. · 2024 · Tetrahedron
39. Import of Entamoeba histolytica Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences
    Herbert J. Santos, Yoko Chiba, Takashi Makiuchi, Saki Arakawa, Yoshitaka Murakami, Kentaro Tomii, Kenichiro Imai, Tomoyoshi Nozaki · 2020 · Microorganisms
40. IgG1-b12–HIV-gp120 Interface in Solution: A Computational Study
    Didac Martí, Carlos Alemán, Jon Ainsley, Óscar Ahumada, Juan Torras · 2021 · Journal of Chemical Information and Modeling
41. Sensing the Messenger: Potential Roles of Cyclic-di-GMP in Rickettsial Pathogenesis
    H. Narra, Abha Sahni, K. Sepuru, Jessica Alsing, S. Sahni · 2022 · International Journal of Molecular Sciences
42. Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases
    Alice R. Cross, S Roy, Mirella Vivoli, Martin Rejzek, Sergey A. Nepogodiev, Matthew J. Cliff, Debbie Salmon, Michail N. Isupov, Robert A. Field, Joann L. Prior et al. · 2022 · Journal of Biological Chemistry
43. Structural and Functional Annotation of Uncharacterized Protein NCGM946K2_146 of Mycobacterium tuberculosis: An In-Silico Approach
    Rabiul Islam, Abu Saim Mohammad Saikat, Shahriar Mahmud, Md. Abu Sayeed Imran, Mohammad Shah Alam, Mahmudul Hasan Masud, Md. Ekhlas Uddin · 2020 · International Electronic Conference on Microbiology (ECM)
44. An In silico Approach for Structural and Functional Annotation of Uncharacterized Protein Rv0986 present in Mycobacterium tuberculosis
    2020 · European Journal of Medical and Health Sciences
45. Comparative phylogeny and evolutionary analysis of Dicer-like protein family in two plant monophyletic lineages
    Behzad Hajieghrari, Naser Farrokhi, Mojahed Kamalizadeh · 2022 · Journal of Genetic Engineering and Biotechnology
46. Dual pharmacological targeting of Mycobacterium tuberculosis (Mtb) PKNA/PKNB: A novel approach for the selective treatment of TB illness
    Ali N. Hussein, Mohammed FAWZI, Rasha Fadhel Obaid, Shaima Rabeea Banoon, Emad Salaam Abood, Abdolmajid Ghasemian · 2022 · Egyptian Journal of Chemistry
47. Use of in silico approaches, synthesis and profiling of Pan-filovirus GP-1,2 preprotein specific antibodies
    Maciej Wiśniewski, Peace Babirye, Carol Musubika, Eleni Papakonstantinou, Samuel Kirimunda, Michał Łaźniewski, Teresa Szczepińska, Moses Lutaakome Joloba, Elias Eliopoulos, Erik Bongcam‐Rudloff et al. · 2024 · Briefings in Functional Genomics
48. A cell based assay using virus-like particles to screen AM type mimics for SARS-CoV-2 neutralisation
    Neeraj Gaur, Shreegauri Urankar, Durba Sengupta, Chepuri Venkata Ramana, Ravindra D. Makde, Kiran A. Kulkarni · 2024 · Biochemical and Biophysical Research Communications
49. Identification of Adjacent NNRTI Binding Pocket in Multi-mutated HIV1- RT Enzyme Model: An in silico Study
    R.F. Kamil, Utsab Debnath, Saroj Kumar Verma, Yenamandra S. Prabhakar · 2018 · Current HIV Research
50. Avaliação estrutural e funcional de novos peptídeos antimicrobianos obtidos a partir de desenho racional
    Luz N. Irazazabal · 2016
51. The molecular basis of hypercontractility caused by the hypertrophic cardiomyopathy mutations R403Q and R663H
    Saswata S. Sarkar, Darshan V. Trivedi, Makenna M. Morck, Arjun S. Adhikari, Shaik Naseer Pasha, Kathleen M. Ruppel, James A. Spudich · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
52. Functional and Structural Characteristics of HLA-B*13:01-Mediated Specific T Cells Reaction in Dapsone-Induced Drug Hypersensitivity
    Haiqin Jiang, Chuang‐Wei Wang, Zhaoxi Wang, Yufei Dai, Yanping Zhu, Yun‐Shien Lee, Yang Cao, Wen‐Hung Chung, Songying Ouyang, Hongsheng Wang · 2022 · SSRN Electronic Journal
53. Structural and Functional Annotation of Uncharacterized Protein NCGM946K2_146 of Mycobacterium tuberculosis: An In-Silico Approach
    Abu Saim Mohammad Saikat · 2020 · ChemRxiv
54. Coarse-grained molecular dynamics simulations of lipid-protein interactions in SLC4 proteins
    Hristina R. Zhekova, Daniel P. Ramirez-Echemendía, Besian I. Sejdiu, Alexander Pushkin, D. Peter Tieleman, Ira Kurtz · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
55. Comparative Homology Modeling and Physicochemical Characterization of Cyprinus carpio Hsp70 Protein
    Pravas Ranjan Sahoo, Santosini Sahu, Geetanjali Das, Gyanaranjan Sahoo, Prakash Chandra Behera · 2020 · Indian Journal of Animal Research
56. Inverting the stereoselectivity of nitrilase toward racemic isobutylsuccinonitrile via modulating the key residues in the substrate binding pocket
    Zhi Chen, Hualei Wang, Dongzhi Wei · 2023 · Molecular Catalysis
57. Exploring the Activation Mechanism of the GPR183 Receptor
    Linfeng Hu, Ke An, Yue Zhang, Chen Bai · 2024 · The Journal of Physical Chemistry B
58. Origin of Pressure Resistance in Deep-Sea Lactate Dehydrogenase
    Simon Maguire, Savannah R. Mercer, Heather A. Wiebe · 2024 · The Journal of Physical Chemistry B
59. Structural analysis of the impact of germline mutations of p16 in melanoma prone families
    D. Arun, Soumya Lipsa Rath · 2025 · Molecular Diversity
60. Probing rare von Willebrand disease–causing mutations in the D4 and C-domains of von Willebrand factor
    Golzar Mobayen, Sammy El-Mansi, Alain Chion, Thomas D. Nightingale, Thomas A. J. McKinnon · 2025 · Research and Practice in Thrombosis and Haemostasis
61. Structure-Guided Design of a KMT9 Inhibitor Prodrug with Cellular Activity
    Sheng Wang, Nicolas P. F. Barthes, Sylvia Urban, Viktor Hazai, Sebastian O. Klein, Tabea Pappert, Paul Kümmel, Nicolas Heller, Johannes Bacher, Maximilian Staudt et al. · 2025 · Journal of Medicinal Chemistry
62. Structural and functional effects of helix dipole moment in photoprotein Mnemiopsin 2
    Zahra Norouzi, Akram Shirdel, Fatemeh Norouzi, Vahab Jafarian, Khosrow Khalifeh · 2025 · Scientific Reports
63. Molecular Dynamics Insights into Novel 1,2,4-Triazole-Based Schiff Base Compounds as Dual-EGFR/Tubulin Inhibitor for the Treatment of Cancer Patient
    Ahmed Abd Elkader El-Rashedy, Asmaa A. Magd El‐Din · 2025 · IntechOpen eBooks
64. A Genome-Wide Modeling and Characterization Study of Pleckstrin Homology Domains in Chlamydomonas reinhardtii
    Münevver Aksoy, Marina Krupitskaya, Shaneen M Singh · 2025 · Plants
65. Cryo-ET and MD simulations reveal that dynein-2 is tuned for binding to the A-tubule of the ciliary doublet
    Haoqiang K He, Shintaroh Kubo, Xuwei Chen, Qianru H. Lv, Azusa Kage, Muneyoshi Ichikawa · 2025 · The EMBO Journal
66. Dynamic binding of HRas·GTP to the allosteric site of Sos investigated by solution NMR
    Bingyue Li, Hao Wang, Hui Zhao Wang, Mengqi Fang, Dong Long · 2025 · JUSTC
67. Metabolite-guided disruption of Spodoptera frugiperda: molecular docking and EAD insights for targeted control
    G. Komala, Shanthi Mookiah, Murugan Marimuthu, Sujayanand Gopalakrishnan Kesharivarmen, Vellaikumar Sampathrajan, Gnanadhas Preetha, Kavitha Govindasamy, Prakash Kolanchi · 2026 · Journal of Plant Diseases and Protection
68. A Systematic Benchmark Study of Free Energy Methods for Quantifying Light-Responsive Binding Affinities of Photoswitchable Antagonists of Beta-Adrenergic Receptors
    Mohammad Khavani, Amirhossein Bakhtiiari, Laleh Khalvati, Rob Leurs, Ruibin Liang · 2026 · Journal of Medicinal Chemistry
69. Outer Membrane–Peptidoglycan Anchoring in Pseudomonas aeruginosa
    Amr M. El‐Araby, Uxía P. de José, Vega Miguel-Ruano, Mijoon Lee, Rhona E. Feltzer, Luis F. Avila‐Cobian, Dušan Hesek, Jed F. Fisher, J.A. Hermoso, Shahriar Mobashery · 2026 · Journal of the American Chemical Society
70. Research Article Detection of sequences related to biosynthesis of antifungal metabolites and identification of a PhzF-like gene in a Pseudomonas rhizobacterium of Piper tuberculatum
    O.S. Silva, Nicolle Louise Ferreira Barros, Andrei Santos Siqueira, Evonnildo Costa Gonçalves, Deyvid Novaes Marques, Sávio Pinho dos Reis, Cláudia Regina Batista de Souza · 2018 · Genetics and Molecular Research
71. Imaginative Order from Reasonable Chaos: Conformation-Driven Activity and Reactivity in Exploring Protein–Ligand Interactions
    Alexander F. Moore, David J. Newman, Shoba Ranganathan, Fei Liu · 2018 · Australian Journal of Chemistry
72. Investigating the functional role of a buried interchain aromatic cluster in Escherichia coli GrpE dimer
    Tulsi Upadhyay, Vaibhav V. Karekar, Upasana S. Potteth, Ishu Saraogi · 2022 · Proteins Structure Function and Bioinformatics
73. Descriptive and functional analyses of four cyclin proteins in Trichomonas vaginalis
    Karla López-Pacheco, Roberto Hernández, Imelda López-Villaseñor · 2022 · Molecular and Biochemical Parasitology
74. Structural and Functional Annotation of Hypothetical Protein P9WIB9 of Mycobacterium tuberculosis H37Rv: An In-Silico Approach
    Wadee Abdullah Al-Shehari · 2022 · International Conference on Emerging Smart Technologies and Applications (eSmarTA)
75. Modelling eNvironment for Isoforms (MoNvIso): A general platform to predict structural determinants of protein isoforms in genetic diseases
    Francesco Oliva, Francesco Musiani, Alejandro Giorgetti, Silvia De Rubeis, Oksana Sorokina, J. Douglas Armstrong, Paolo Carloni, Paolo Ruggerone · 2023 · Frontiers in Chemistry
76. Characterization of the coupling mechanism of scorpion β-neurotoxins on the voltage-gated sodium channel hNav1.6
    Pavel Andrei Montero-Dominguez, Gerardo A. Corzo · 2023 · Journal of Biomolecular Structure and Dynamics
77. Computational Modeling in the Development of Antiviral Agents
    Priyank Purohit, Pobitra Borah, Sangeeta Hazarika, Gaurav Joshi, Pran Kishore Deb · 2023 · Challenges and advances in computational chemistry and physics
78. Collagen a1 (XI) structure prediction by Alphafold 2
    Abu Sayeed Chowdhury, Julia Thom Oxford · 2022 · International Conference on Computational Science and Computational Intelligence (CSCI)
79. Generation of antibodies to an extracellular region of the transporters Glut1/Glut4 by immunization with a designed antigen
    T. Sumikawa, Makoto Nakakido, Ryo Matsunaga, Daisuke Kuroda, Satoru Nagatoishi, Kouhei Tsumoto · 2024 · Journal of Biological Chemistry
80. Targeting Inhibitor of Enterococcus faecalis: Insights from Comparative Molecular Dynamics and Binding Free Energy Analyses
    Ahmed Abd Elkader El-Rashedy · 2024 · Infectious diseases
81. In Silico Structural and Functional Characterization of the Thaumatin‐Like Gene Family in Phaseolus lunatus Reveals the Potential for Microbial and Antiviral Activity
    Dalton Ferreira Matos, Maria Cidinária Silva Alves, Ruana Carolina Cabral da Silva, Hortência E. P. Santana, Denise Santos Ruzene, Marcus Vinícius de Aragão Batista, Daniel Pereira Silva · 2024 · Peptide Science
82. Characterization by LC-MS/MS analysis of KLH vaccine conjugated with a tick antigen peptide
    Satomy Pousa, Pablo E. Ramos‐Bermúdez, Vladimir Besada, Ania Cabrales, Osmany Guirola, Hilda Garay, Alina Rodríguez-Mallón, Katharina Zettl, Jacek R. Wiśniewski, Luis Javier González · 2025 · The Analyst
83. Coronavirus NSP14 drives internal m7G modification to rewire host splicing and promote viral replication
    Ensueño Esmeralda Sáenz Altamirano, Chien-Hsin Huang, Yueh-Lin Tsai, Tiffany J. Tzeng, Natália Teruel, Yoatzin Peñaflor-Téllez, Shruti Chatterjee, Isha Pandey, Neelam Oswal, Y. Grace Chen et al. · 2026 · Nucleic Acids Research
84. Temperature sensitivities of metazoan and pre-metazoan Src kinases
    W. Todd Miller · 2020 · Biochemistry and Biophysics Reports
85. Development of novel frog‐skin peptide scaffolds with selectivity towards melanocortin receptor subtypes
    Uru Malik, Lai Yue Chan, Minying Cai, Victor J. Hruby, Quentin Kaas, Norelle L. Daly, David J. Craik · 2020 · Peptide Science
86. PENSAMIENTO CRÍTICO EN LA INVESTIGACIÓN CIENTÍFICA Y ACADÉMICA
    Camilo Mauricio Grillo Torres, Jordan Piero Borda Colque, Juan Reynaldo Paredes-Quispe, Jordan Piero Borda Colque, Jordan Piero Borda Colque, Hugo Ticona Salluca, Wilber Pastor, Juan Carlos Buendía Pastrana, José Antonio Ogosi Auqui, José Antonio et al. · 2023
87. A Practical Guide to Structural Aspects of Macrocycles (NMR, X‐Ray, and Modeling)
    David J. Craik, Quentin Kaas, Conan K. L. Wang · 2017 · Wiley eBooks
88. Computational Tools for the Structural Characterization of Proteins and Their Complexes from Sequence‐Evolutionary Data
    António J. Preto, José Guilherme de Almeida, Jörg Schaarschmidt, Li C. Xue, Irina Sousa Moreira, Alexandre M. J. J. Bonvin · 2018 · Encyclopedia of Analytical Chemistry
89. TatA and TatB generate a hydrophobic mismatch that is important for function and assembly of the Tat translocon in Escherichia coli
    Denise Mehner-Breitfeld, Michael T. Ringel, Daniel Alexander Tichy, Laura Josefine Endter, Kai Steffen Stroh, Heinrich Lünsdorf, Herre Jelger Risselada, Thomas Brüser · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
90. Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF
    Ivan Corbeski, Xiaohu Guo, Bruna V. Eckhardt, Domenico Fasci, Wouter W. Wiegant, Melissa Ann Graewert, Kees Vreeken, Hans Wienk, Dmitri I. Svergun, Albert J. R. Heck et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
91. The human RNA polymerase I structure reveals an HMG-like transcription factor docking domain specific to metazoans
    Julia L. Daiß, Michael Pilsl, Kristina Straub, Andrea Bleckmann, Mona Höcherl, Florian B. Heiss, Guillermo Abascal-Palacios, Ewan Phillip Ramsay, Katarína Tlučková, Jean-Clément Mars et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
92. Statistical methods for biological sequence analysis for DNA binding motifs and protein contacts
    Roth, Christian · 2021
93. Advanced Database Mining of Efficient Biocatalysts by Sequence and Structure Bioinformatics and Microfluidics
    Michal Vasina, Pavel Vaňáček, Jiří Hon, David R. Kovar, Hana Faldynová, Antonín Kunka, Tomáš Buryška, Christoffel P. S. Badenhorst, Stanislav Mazurenko, David Bednář et al. · 2022 · SSRN Electronic Journal
94. DOCK Blaster 2.0 - Automated Optimization of Docking Models using Retrospective Docking
    Ian Knight, Khanh G. Tang, Olivier Mailhot, John J. Irwin · 2023 · ChemRxiv
95. Mobile barrier mechanisms for Na + -coupled symport in an MFS sugar transporter
    2023
96. The prefoldin-like protein AtURI exhibits characteristics of instrinsically disordered proteins
    Yaiza Gómez‐Mínguez, Alberto Palacios‐Abella, Cecilia Costigliolo Rojas, Mariana Barber, Laura Hernández‐Villa, Cristina Úrbez, David Alabadı́ · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
97. Structure and dynamics of the autoantigen GAD65 in complex with the human autoimmune polyendocrine syndrome type 2-associated autoantibody b96.11
    Susanne H. D. Ständer, Cyril F. Reboul, S Lee, Daniel Williams, Peter G. Chandler, Maurício G. S. Costa, David E. Hoke, John D. T. Jimma, James Fodor, Gustavo Fenalti et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
98. Target specific peptide design using latent space approximate trajectory collector
    Tong Lin, Sijie Chen, Ruchira Basu, Dehua Pei, Xiaolin Cheng, Levent Burak Kara · 2024 · Research Square
99. Capture, mutual inhibition and release mechanism for aPKC-Par6 and its multi-site polarity substrate Lgl
    Christopher P. Earl, Mathias Cobbaut, André Barros Carvalho, Marina E. Ivanova, David C. Briggs, Eurico Morais‐de‐Sá, Peter J. Parker, Neil Q. McDonald · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
100. Structural Insights into Immature Dengue Virus-Like Particles Revealed by Cryo-EM and Molecular Dynamics Simulations
     Palur Venkata Raghuvamsi, Guanwen Chen, Day‐Yu Chao, Ya‐Na Wu, Jedhan Ucat Galula, Chun-Hsiung Wang, Peter John Bond, Jan K. Marzinek, Shang‐Rung Wu · 2025 · bioRxiv (Cold Spring Harbor Laboratory)