Comparative protein structure modeling using MODELLER

Cited by (710)

Items 301–400 of 710

1. Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes
   Robyn M. Kaake, Ignacia Echeverria, Seung Joong Kim, John Von Dollen, Nicholas M. Chesarino, Yuqing Feng, Clinton Yu, Hai Minh Ta, Linda Chelico, Lan Huang et al. · 2021 · Molecular & Cellular Proteomics
2. Mobile barrier mechanisms for Na+-coupled symport in an MFS sugar transporter
   Hariharan, Parameswaran, Shi, Yuqi, Katsube, Satoshi, Willibal, Katleen, Burrows, Nathan D, Mitchell, Patrick, Bakhtiiari, Amirhossein, Stanfield, Samantha, Pardon, Els, Kaback, H Ronald et al. · 2024 · eLife
3. Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2
   Pujarini Dash, Jyotirmayee Turuk, Santosh Kumar Behera, Subrata Kumar Palo, Sunil K. Raghav, Arup Ghosh, Jyotsnamayee Sabat, Sonalika Rath, Subhra Subhadra, Khokan Rana et al. · 2021 · International Journal of Infectious Diseases
4. Degradation of indole via a two-component indole oxygenase system from Enterococcus hirae GDIAS-5
   Jun‐Jin Deng, Jingyi Hu, Xueying Han, Yang Li, Xiao‐Chun Luo, Zhilin Wang, Jiazhou Li · 2023 · Journal of Hazardous Materials
5. Pyrrole-Based Enaminones as Building Blocks for the Synthesis of Indolizines and Pyrrolo[1,2-a]pyrazines Showing Potent Antifungal Activity
   Diter Miranda-Sánchez, Carlos H. Escalante, Dulce Andrade-Pavón, Omar Gómez‐García, Edson Barrera, Lourdes Villa‐Tanaca, Francisco Delgado, Joaquı́n Tamariz · 2023 · Molecules
6. Uncovering the taste features: Applying machine learning and molecular docking approaches to predict umami taste intensity of peptides
   Mariia S. Ashikhmina, Artemii M. Zenkin, Igor S. Pantiukhin, Igor G. Litvak, Pavel V. Nesterov, Kunal Dutta, Sergey Shityakov, Michael Nosonovsky, Maxim A. Korablev-Dyson, Olga Yu. Orlova et al. · 2024 · Food Bioscience
7. Systematic exploration of predicted destabilizing nonsynonymous single nucleotide polymorphisms (nsSNPs) of human aldehyde oxidase: A Bio‐informatics study
   Catarina Coelho, Jayaraman Muthukumaran, Teresa Santos‐Silva, Maria João Romão · 2019 · Pharmacology Research & Perspectives
8. Performance of human and server prediction in CAPRI rounds 38‐45
   Rui Duan, Liming Qiu, Xianjin Xu, Zhiwei Ma, Benjamin Ryan Merideth, Chi‐Ren Shyu, Xiaoqin Zou · 2020 · Proteins Structure Function and Bioinformatics
9. Crystal structure and mutational analysis of the human TRIM7 B30.2 domain provide insights into the molecular basis of its binding to glycogenin-1
   Christian J. Muñoz Sosa, Federico M. Issoglio, M.E. Carrizo · 2021 · Journal of Biological Chemistry
10. Structure-Based Design of an RNase Chimera for Antimicrobial Therapy
    Guillem Prats-Ejarque, Helena Lorente, Clara Villalba, Raúl Anguita, Lu Lu, Sergi Vázquez-Monteagudo, Pablo Fernández-Millán, Ester Boix · 2021 · International Journal of Molecular Sciences
11. Functional Characterization of Odorant Binding Protein PyasOBP2 From the Jujube Bud Weevil, Pachyrhinus yasumatsui (Coleoptera: Curculionidae)
    Bo Hong, Qing Chang, Yingyan Zhai, Bowen Ren, Feng Zhang · 2022 · Frontiers in Physiology
12. The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
    Julia L. Daiß, Michael Pilsl, Kristina Straub, Andrea Bleckmann, Mona Höcherl, Florian B. Heiss, Guillermo Abascal-Palacios, Ewan Phillip Ramsay, Katarína Tlučková, Jean-Clément Mars et al. · 2022 · Life Science Alliance
13. In silico characterization of the psilocybin biosynthesis pathway
    William A. Irvine, Marshall W. Tyler, Rupika Delgoda · 2023 · Computational Biology and Chemistry
14. Design and evaluation of EphrinA1 mutants with cerebral protective effect
    Yuanjun Zhu, Yuanqing Gao, Danping Zheng, Mengyang Shui, Kuai Yu, Xiaoyan Liu, Yuan Lin, Li Su, Wenxing Yang, Yinye Wang · 2017 · Scientific Reports
15. Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches
    Benjamin Bardiaux, Florence Cordier, Sébastien Brier, Aracelys López‐Castilla, Nadia Izadi‐Pruneyre, Michaël Nilges · 2019 · Journal of Biomolecular NMR
16. A Multi-Pronged Computational Pipeline for Prioritizing Drug Target Strategies for Latent Tuberculosis
    Ushashi Banerjee, Santhosh Sankar, Amit Singh, Nagasuma R Chandra · 2020 · Frontiers in Chemistry
17. Adrenomedullin 2/intermedin is a slow off-rate, long-acting endogenous agonist of the adrenomedullin2 G protein–coupled receptor
    Katie M. Babin, Jordan A. Karim, Peyton H. Gordon, James Lennon, Alex Dickson, Augen A. Pioszak · 2023 · Journal of Biological Chemistry
18. Comprehensive Characterization of LAT1 Cholesterol-Binding Sites
    Keino Hutchinson, Avner Schlessinger · 2024 · Journal of Chemical Theory and Computation
19. Adenine nucleotide translocator and ATP synthase cooperate in mediating the mitochondrial permeability transition
    Ludovica Tommasin, Andrea Carrer, Federica Boscolo Nata, Elena Frigo, Federico Fogolari, Giovanna Lippe, Michela Carraro, Paolo Bernardi · 2025 · The Journal of Physiology
20. Tools for structural lectinomics: From structures to lectomes
    Frédérique Lisacek, Boris Schnider, Anne Imberty · 2025 · BBA Advances
21. Exploring Proprotein Convertase Subtilisin/Kexin 9 (PCSK9) Autoproteolysis Process by Molecular Simulations: Hints for Drug Design
    Jacopo Sgrignani, Enrico Mario Alessandro Fassi, Carmen Lammi, Gabriella Roda, Giovanni Grazioso · 2020 · ChemMedChem
22. Tyrosine Nitration Contributes to Nitric Oxide–Stimulated Degradation of CYP2B6
    Choon‐Myung Lee, Paul Ross Wilderman, Ji Won Park, Thomas J. Murphy, Edward T. Morgan · 2020 · Molecular Pharmacology
23. Discovery of Selective Inhibitor Leads by Targeting an Allosteric Site in Insulin-Regulated Aminopeptidase
    Ioannis Temponeras, Lykourgos Chiniadis, Athanasios Papakyriakou, Efstratios Stratikos · 2021 · Pharmaceuticals
24. Carnitine palmitoyl transferase I: Conformational changes induced by long-chain fatty acyl CoA ligands
    Vitor Galvão Lopes, Adriano B. Chaves‐Filho, Marcos Yukio Yoshinaga, Mário Hiroyuki Hirata, Gláucio Monteiro Ferreira · 2022 · Journal of Molecular Graphics and Modelling
25. Binding of the transcription activator-like effector augments transcriptional regulation by another transcription factor
    Katja Leben, Žiga Strmšek, Tina Lebar, Anže Verbič, Matej Dragovan, Neža Omersa, Gregor Anderluh, Roman Jerala · 2022 · Nucleic Acids Research
26. Species Differences in Response to Binding Interactions of Bisphenol A and its Analogs with the Modeled Estrogen Receptor 1 and In Vitro Reporter Gene Assay in Human and Zebrafish
    Chang Gyun Park, Nancy Singh, Chang Seon Ryu, Ju Yong Yoon, Maranda Esterhuizen‐Londt, Young Jun Kim · 2022 · Environmental Toxicology and Chemistry
27. Development of a Single-Chain Variable Fragment of CR3022 for a Plasmonic-Based Biosensor Targeting the SARS-CoV-2 Spike Protein
    Taufik Ramdani Tohari, Isa Anshori, Umi Baroroh, Antonius Eko Nugroho, Gilang Gumilar, Shinta Kusumawardani, Sari Syahruni, Brian Yuliarto, Wyanda Arnafia, Irvan Faizal et al. · 2022 · Biosensors
28. Survivin prevents the polycomb repressor complex 2 from methylating histone 3 lysine 27
    Maja Jensen, Venkataragavan Chandrasekaran, María-José García-Bonete, Shuxiang Li, Atsarina Larasati Anindya, Karin Andersson, Malin C. Erlandsson, N. Yu. Oparina, Björn M. Burmann, Ulrika Brath et al. · 2023 · iScience
29. It Takes Tau to Tango: Investigating the Fuzzy Interaction between the R2-Repeat Domain and Tubulin C-Terminal Tails
    Jules Marien, Chantal Prévost, Sophie Sacquin‐Mora · 2023 · Biochemistry
30. Missense mutation in SLIT2 associated with congenital myopia, anisometropia, connective tissue abnormalities, and obesity
    Katherine Y. Liu, Jesse D. Sengillo, Gabriel Velez, Ruben Jauregui, Lynn Y. Sakai, Irene Hussels Maumenee, Alexander G. Bassuk, Vinit B. Mahajan, Stephen H. Tsang · 2018 · Orphanet Journal of Rare Diseases
31. Polarized displacement by transcription activator-like effectors for regulatory circuits
    Tina Lebar, Anže Verbič, Ajasja Ljubetič, Roman Jerala · 2018 · Nature Chemical Biology
32. Recent Trends in System-Scale Integrative Approaches for Discovering Protective Antigens Against Mycobacterial Pathogens
    Aarti Rana, Shweta Thakur, Girish Kumar, Yusuf Akhter · 2018 · Frontiers in Genetics
33. Domain cross-talk within a bifunctional enzyme provides catalytic and allosteric functionality in the biosynthesis of aromatic amino acids
    Yu Bai, Eric J. M. Lang, Ali Reza Nazmi, Emily J. Parker · 2019 · Journal of Biological Chemistry
34. The complete genome sequence of bearded dragon adenovirus 1 harbors three genes encoding proteins of the C-type lectin-like domain superfamily
    Judit J. Pénzes, Leonóra Szirovicza, Balázs Harrach B · 2020 · Infection Genetics and Evolution
35. Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway
    Richa Gupta, Yong Liu, Huanchen Wang, Christopher T. Nordyke, Ryan Z Puterbaugh, Wenjun Cui, Krisztina Varga, Feixia Chu C, Hengming Ke, Harish Vashisth et al. · 2020 · Journal of Molecular Biology
36. Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi
    Liu-Tao Zhai, S. Réty, Wei‐Fei Chen, Ze-Yu Song, Daniel Auguin, Bo Sun, Shuo‐Xing Dou, Xu‐Guang Xi · 2021 · Nucleic Acids Research
37. Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects
    Yangyang Lin, Sam Z. Grinter, Zhongju Lu, Xianjin Xu, Hong-Zhan Wang, Hongwu Liang, Panpan Hou, Junyuan Gao, Chris Clausen, Jingyi Shi et al. · 2021 · Proceedings of the National Academy of Sciences
38. Identification and In Silico Characterization of Novel Helicobacter pylori Glucose-6-Phosphate Dehydrogenase Inhibitors
    Beatriz Hernández‐Ochoa, Gabriel Navarrete‐Vázquez, Rodrigo Aguayo‐Ortiz, Paulina Ortiz-Ramírez, Laura Morales-Luna, Víctor Martínez‐Rosas, Abigail González‐Valdez, Fernando Gómez‐Chávez, Sergio Enríquez‐Flores, Carlos Wong Baeza et al. · 2021 · Molecules
39. Identification of Key Regions Mediating Human Melatonin Type 1 Receptor Functional Selectivity Revealed by Natural Variants
    Alan Hégron, Eunna Huh, Xavier Deupí, Badr Sokrat, Wenwen Gao, Christian Le Gouill, Mickaël Canouil, Mathilde Boissel, Guillaume Charpentier, Ronan Roussel et al. · 2021 · ACS Pharmacology & Translational Science
40. Identification of novel inhibitors targeting TIRAP interactions with BTK and PKCδ in inflammation through an in silico approach
    S. Rajpoot, Gaurava Srivastava, Mohammad Imran Siddiqi, U. Saqib, Suraj P. Parihar, N. Hirani, M.S. Baig · 2022 · SAR and QSAR in environmental research
41. Application of Novel Microbial Consortia for Environmental Site Remediation and Hazardous Waste Management Toward Low- and High-Density Polyethylene and Prioritizing the Cost-Effective, Eco-friendly, and Sustainable Biotechnological Intervention
    Sinosh Skariyachan, Meghna Manjunath, Apoorva Shankar, Nikhil Bachappanavar, Amulya A. Patil · 2018 · Springer eBooks
42. α-Glucosidase inhibitory activities of natural deep eutectic systems and their components: Ascorbate is a powerful inhibitor of α-glucosidase
    Boris M. Popović, Dejan Agić, Ružica Ždero Pavlović, Tatjana Jurić, Velimir Mladenov · 2023 · Journal of Molecular Liquids
43. In silico identification of modulators of J domain protein-Hsp70 interactions in Plasmodium falciparum: a drug repurposing strategy against malaria
    Harpreet Singh, Shaikha Y. Almaazmi, Tanima Dutta, Robert A. Keyzers, Gregory L. Blatch · 2023 · Frontiers in Molecular Biosciences
44. Mutant analysis of Kcng4b reveals how the different functional states of the voltage-gated potassium channel regulate ear development
    Justyna Jędrychowska, Vitya A. Vardanyan, Miłosz Wieczór, Antoni Marciniak, Jacek Czub, Razieh Amini, Ruchi Jain, Hongyuan Shen, Hyungwon Choi, Jacek Kuźnicki et al. · 2024 · Developmental Biology
45. A ZPR1 mutation is associated with a novel syndrome of growth restriction, distinct craniofacial features, alopecia, and hypoplastic kidneys
    Yoko Itō, Amanda C Smith, Kristin D. Kernohan, Izabella Agostinho Pena, A. Ahmed, Laura M. McDonell, Chandree L. Beaulieu, Dennis E. Bulman, A Smidt, Sarah L. Sawyer et al. · 2018 · Clinical Genetics
46. Aprotinin interacts with substrate-binding site of human dipeptidyl peptidase III
    Dejan Agić, Hrvoje Brkić, Saša Kazazić, Antonija Tomić, Marija Abramić · 2018 · Journal of Biomolecular Structure and Dynamics
47. Insights into the binding mode and functional components of the analgesic-antitumour peptide from Buthus martensii Karsch to human voltage-gated sodium channel 1.7 based on dynamic simulation analysis
    Fan Zhao, Jinlong Wang, Hong-Yan Ming, Yanan Zhang, Ying-Qiao Dun, Jinghai Zhang, Yongbo Song · 2019 · Journal of Biomolecular Structure and Dynamics
48. Specific Post-Translational Modifications of VDAC3 in ALS-SOD1 Model Cells Identified by High-Resolution Mass Spectrometry
    Maria Gaetana Giovanna Pittalà, Simona Reina, Stefano Conti Nibali, Annamaria Cucina, Salvatore Antonio Maria Cubisino, Vincenzo Cunsolo, Giuseppe Federico Amodeo, Salvatore Foti, Vito De Pinto, Rosaria Saletti et al. · 2022 · International Journal of Molecular Sciences
49. Exploring the Pivotal Components Influencing the Side Effects Induced by an Analgesic-Antitumor Peptide from Scorpion Venom on Human Voltage-Gated Sodium Channels 1.4 and 1.5 through Computational Simulation
    Fan Zhao, Liangyi Fang, Qi Wang, Qi Ye, Yanan He, Weizhuo Xu, Yongbo Song · 2022 · Toxins
50. Bacterial origins of thymidylate metabolism in Asgard archaea and Eukarya
    Jonathan Filée, Hubert F. Becker, Lucille Mellottee, Rima Zein-Eddine, Zhihui Li, Wenlu Yin, Jean‐Christophe Lambry, Ursula Liebl, Hannu Myllykallio · 2023 · Nature Communications
51. Computational Analysis for the Rational Design of Anti-Amyloid Beta (Aβ) Antibodies
    D’Artagnan Greene, Theodora Po, Jennifer Pan, Tanya Tabibian, Ray Luo · 2018 · The Journal of Physical Chemistry B
52. Identification and molecular characterization of a psychrophilic GH1 β-glucosidase from the subtropical soil microorganism Exiguobacterium sp. GXG2
    Bangqiao Yin, Hengsen Gu, Xueyan Mo, Yue Xu, Bing Yan, Quan-Wen Li, Qian Ou, Bo Wu, Chen Guo, Chengjian Jiang · 2019 · AMB Express
53. Structural Characterization of Full-Length Human Dehydrodolichyl Diphosphate Synthase Using an Integrative Computational and Experimental Approach
    Michal Lisnyansky, Su Youn Lee, Ah Young Ki, Noa Kapelushnik, Anat Loewenstein, Ka Young Chung, Dina Schneidman‐Duhovny, Moshe Giladi, Hadas Newman, Yoni Haitin · 2019 · Biomolecules
54. Cross-seeding between the functional amyloidogenic CRES and CRES3 family members and their regulation of Aβ assembly
    Hoa Quynh Do, Aveline Hewetson, Collin G. Borcik, Mary Catherine Hastert, Sandra Whelly, Benjamin J. Wylie, Roger Bryan Sutton, Gail A. Cornwall · 2020 · Journal of Biological Chemistry
55. Conformational Change of Transcription Factors from Search to Specific Binding: A lac Repressor Case Study
    Malin Lüking, Johan Elf, Yaakov Levy · 2022 · The Journal of Physical Chemistry B
56. RNA‐dependent chaperone (chaperna) as an engineered pro‐region for the folding of recombinant microbial transglutaminase
    Jinhee Lee, Ahyun Son, Paul Kim, Soon Bin Kwon, Ji Eun Yu, Gyoonhee Han, Baik Lin Seong · 2018 · Biotechnology and Bioengineering
57. In vitro and in silico studies on membrane interactions of diverse Capsicum annuum flower γ‐thionin peptides
    Siddhanta V. Nikte, Apurva Gahankari, Javed A. Mulla, Durba Sengupta, Manali Joshi, Vaijayanti A. Tamhane · 2019 · Proteins Structure Function and Bioinformatics
58. SARS-CoV-2 Nsp1 N-terminal and linker regions as a platform for host translational shutoff
    Andrea Graziadei, Fabian Schildhauer, Christian M. T. Spahn, Matthew L. Kraushar, Juri Rappsilber · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
59. Molecular dynamics simulations of lipid-protein interactions in SLC4 proteins
    Hristina R. Zhekova, Daniel P. Ramirez-Echemendía, Besian I. Sejdiu, Alexander Pushkin, D. Peter Tieleman, Ira Kurtz · 2024 · Biophysical Journal
60. High‐throughput system for the thermostability analysis of proteins
    Sae Ito, Ryo Matsunaga, Makoto Nakakido, Daisuke Komura, Hiroto Katoh, Shumpei Ishikawa, Kouhei Tsumoto · 2024 · Protein Science
61. SUMOylation activates large tumour suppressor 1 to maintain the tissue homeostasis during Hippo signalling
    Liu Mei, Meiyu Qv, Hangyang Bao, Qiangqiang He, Yana Xu, Qin Zhang, Wei Shi, Qianlei Ren, Ziyi Yan, Chengyun Xu et al. · 2021 · Oncogene
62. A Study of Type II ɛ-PL Degrading Enzyme (pldII) in Streptomyces albulus through the CRISPRi System
    Qinyu Li, Xiaojia Chen, Yuanjie Wu, Zheng Chen, Yang Han, Peng Zhou, Jiping Shi, Zhijun Zhao · 2022 · International Journal of Molecular Sciences
63. New KCNN4 Variants Associated With Anemia: Stomatocytosis Without Erythrocyte Dehydration
    Benoit Allegrini, Stephane Jedele, Ludivine David, Morgane Mignotet, Raphaël Rapetti‐Mauss, Catherine Etchebest, Odile Fenneteau, Agnès Loubat, A. Boutet, Christie P. Thomas et al. · 2022 · Frontiers in Physiology
64. Whole exome sequencing identified five novel variants in CNTN2, CARS2, ARSA, and CLCN4 leading to epilepsy in consanguineous families
    Angham Abdulrahman Abdulkareem, Qaiser Zaman, Hamza Khan, Sabar Khan, Gauhar Rehman, Nabeel Tariq, Mashal Ahmad, Muhammad Owais, Najumuddin, Osama Yousef Muthaffar et al. · 2023 · Frontiers in Genetics
65. Multiple Functions of Compatible Solute Ectoine and Strategies for Constructing Overproducers for Biobased Production
    Wei Zhang, Kun Liu, Fang Kong, Ye Tao, Tianwen Wang · 2023 · Molecular Biotechnology
66. ANCUT1, a novel thermoalkaline cutinase from Aspergillus nidulans and its application on hydroxycinnamic acids lipophilization
    Carolina Peña-Montes, Eva Patricia Bermúdez‐García, Denise Castro-Ochoa, Fernanda Vega-Pérez, Katia Esqueda-Domínguez, José Augusto Castro-Rodríguez, Augusto González-Canto, Laura Segoviano-Reyes, Arturo Navarro‐Ocaña, Amelia Farrés · 2024 · Biotechnology Letters
67. Three SpoA-domain proteins interact in the creation of the flagellar type III secretion system in Helicobacter pylori
    Kwok Ho Lam, Chaolun Xue, Kailei Sun, Huawei Zhang, Wendy Wai Ling Lam, Zeyu Zhu, Juliana Tsz Yan Ng, William E. Sause, Paphavee Lertsethtakarn, Kwok‐Fai Lau et al. · 2018 · Journal of Biological Chemistry
68. Computational Prediction of Amino Acids Governing Protein-Membrane Interaction for the PIP3 Cell Signaling System
    William A. Irvine, Jack U. Flanagan, Jane R. Allison · 2018 · Structure
69. A Functional Analysis of the Unclassified Pro2767Ser BRCA2 Variant Reveals Its Potential Pathogenicity that Acts by Hampering DNA Binding and Homology-Mediated DNA Repair
    Maria Valeria Esposito, Giuseppina Minopoli, Luciana Esposito, Valeria D’Argenio, Federica Di Maggio, Emanuele Sasso, Massimiliano D’Aiuto, Nicola Zambrano, Francesco Salvatore · 2019 · Cancers
70. A conserved evolutionary mechanism permits Δ9 desaturation of very-long-chain fatty acyl lipids
    Yuanheng Cai, Xiaohong Yu, Jin Ling Chai, Chang‐Jun Liu, John Shanklin · 2020 · Journal of Biological Chemistry
71. A Rare Mutation in an Infant-Derived HIV-1 Envelope Glycoprotein Alters Interprotomer Stability and Susceptibility to Broadly Neutralizing Antibodies Targeting the Trimer Apex
    Nitesh Mishra, Shaifali Sharma, Ayushman Dobhal, Sanjeev Kumar, Himanshi Chawla, Ravinder Singh, Bimal Kumar Das, Sushil Kumar Kabra, Rakesh Lodha, Kalpana Luthra · 2020 · Journal of Virology
72. Nucleotide-binding sites can enhance N-acylation of nearby protein lysine residues
    Andrew M. James, Anthony C. Smith, Shujing Ding, Jack W. Houghton, Alan J. Robinson, Robin Antrobus, Ian M. Fearnley, Michael P. Murphy · 2020 · Scientific Reports
73. Interaction Analysis of a Plasmodium falciparum PHISTa-like Protein and PfEMP1 Proteins
    Baoling Yang, Xiaofeng Wang, Ning Jiang, Xiaoyu Sang, Ying Feng, Ran Chen, Xinyi Wang, Qijun Chen · 2020 · Frontiers in Microbiology
74. Structure Prediction, Characterization, and Functional Annotation of Uncharacterized Protein BCRIVMBC126_02492 of Bacillus cereus: An In Silico Approach
    2020 · American Journal of Pure and Applied Biosciences
75. Allosteric control of a bacterial stress response system by an anti‐σ factor
    Justin L. Luebke, Daniel S. Eaton, Joseph R. Sachleben, Sean Crosson · 2017 · Molecular Microbiology
76. Structural bioinformatics analysis of variants on GPCR function
    S. A. Syed Haneef, Shoba Ranganathan · 2019 · Current Opinion in Structural Biology
77. In trans variant calling reveals enrichment for compound heterozygous variants in genes involved in neuronal development and growth.
    Allison Cox, Fillan S. Grady, Gabriel Velez, Vinit B. Mahajan, Polly J. Ferguson, Andrew Kitchen, Benjamin W. Darbro, Alexander G. Bassuk · 2019 · Genetics Research
78. Engineering SARS-CoV-2 cocktail antibodies into a bispecific format improves neutralizing potency and breadth
    Zhiqiang Ku, Xuping Xie, Jianqing Lin, Peng Gao, Abbas El Sahili, Hang Su, Yang Liu, Xiaohua Ye, Xin Li, Xuejun Fan et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
79. Understanding Cysteine Reactivity in Protein Environments with Electric Fields
    Valerie Vaissier Welborn · 2023 · The Journal of Physical Chemistry B
80. Microbial production of an aromatic homopolyester
    Youngjoon Lee, Minju Kang, Woo Dae Jang, So Young Choi, Jung Eun Yang, Sang Yup Lee · 2024 · Trends in biotechnology
81. Cross‐protection of allergen immunotherapy‐induced antibodies to related allergens requires a high degree of structural identity
    Hilal Demir, Christian Radauer, Maria Regina Strobl, Stephan Scheurer, Tamar Kinaciyan, Barbara Bohle · 2024 · Allergy
82. UbaLAI is a monomeric Type IIE restriction enzyme
    Giedrius Sasnauskas, Giedrė Tamulaitienė, Gintautas Tamulaitis, Jelena Čalyševa, Miglė Laime, Renata Rimšelienė, Arvydas Lubys, Virginijus Šikšnys · 2017 · Nucleic Acids Research
83. Detailed Analyses of Molecular Interactions between Favipiravir and RNA Viruses In Silico
    Tatsuya Shirai, Mitsuru Sada, Takeshi Saraya, Daisuke Kurai, Soyoka Sunagawa, Haruyuki Ishii, Hirokazu Kimura · 2022 · Viruses
84. Lethal perturbation of an Escherichia coli regulatory network is triggered by a restriction-modification system's regulator and can be mitigated by excision of the cryptic prophage Rac
    Katarzyna Gucwa, Ewa Wons, Aleksandra Wiśniewska, Marcin Jąkalski, Zuzanna Dubiak, Lukasz Pawel Kozlowski, Iwona Mruk · 2023 · Nucleic Acids Research
85. Spectrum of genetic variants in bilateral sensorineural hearing loss
    Amanat Ali, Mohammed Tabouni, Praseetha Kizhakkedath, Ibrahim Baydoun, Mushal Allam, Anne John, Faiza Busafared, Ayesha Alnuaimi, Fatma A. Al-Jasmi, Hiba Alblooshi · 2024 · Frontiers in Genetics
86. Characterizing clinically relevant natural variants of GPCRs using computational approaches
    Durba Sengupta, Krushna Sonar, Manali Joshi · 2017 · Methods in cell biology
87. Structural and Functional Elucidation of IF‐3 Protein of Chloroflexus aurantiacus Involved in Protein Biosynthesis: An In Silico Approach
    Abu Saim Mohammad Saikat, Md. Ekhlas Uddin, Tasnim Ahmad, Shahriar Mahmud, Md. Abu Sayeed Imran, Sohel Ahmed, Salem A. Alyami, Mohammad Ali Moni · 2021 · BioMed Research International
88. Disrupted Choline Clearance and Sustained Acetylcholine Release In Vivo by a Common Choline Transporter Coding Variant Associated with Poor Attentional Control in Humans
    Eryn Donovan, Cassandra Avila, Sarah Klausner, Vinay Parikh, Cristina Fenollar‐Ferrer, Randy Blakely, Martin F. Sarter · 2022 · Journal of Neuroscience
89. Computer-Aided Design of α-L-Rhamnosidase to Increase the Synthesis Efficiency of Icariside I
    Jiajun Huang, Hao-Xuan Hu, Yu‐Jing Lu, Ya‐Dan Bao, Jinlin Zhou, Mingtao Huang · 2022 · Frontiers in Bioengineering and Biotechnology
90. Molecular dynamics of mismatch detection—How MutS uses indirect readout to find errors in DNA
    Abhilash Jayaraj, Kelly M. Thayer, David L. Beveridge, Manju Hingorani · 2023 · Biophysical Journal
91. Mutations of voltage‐gated sodium channel contribute to pyrethroid resistance in Panonychus citri
    Deng Pan, Qiu‐Juan Luo, Andrias O. O’Reilly, Guo‐Rui Yuan, Jin‐Jun Wang, Wei Dou · 2023 · Insect Science
92. Cytochrome P450 2B diversity in a dietary specialist—the red tree vole (Arborimus longicaudus)
    Smiljka Kitanovic, Chad A. Marks-Fife, Quincy A Parkes, Paul Ross Wilderman, James R. Halpert, M. Denise Dearing · 2018 · Journal of Mammalogy
93. How does binding of agonist ligands control intrinsic molecular dynamics in human NMDA receptors?
    Zoltan Palmai, Kimberley Houenoussi, Sylvia Cohen‐Kaminsky, Luba Tchertanov · 2018 · PLoS ONE
94. Molecular Evolution of the Protease Region in Norovirus Genogroup II
    Keita Ozaki, Yuki Matsushima, Koo Nagasawa, Jumpei Aso, Takeshi Saraya, Keisuke Yoshihara, Koichi Murakami, Takumi Motoya, Akihide Ryo, Makoto Kuroda et al. · 2020 · Frontiers in Microbiology
95. A peptide derived from phage-display limits psoriasis-like lesions in mice
    Luis Ángel Zapi-Colín, Guadalupe Gutiérrez‐Gonzalez, Sandra Rodríguez–Martínez, Juan C. Cancino‐Díaz, Alfonso Méndez-Tenorio, Sonia Mayra Pérez‐Tapia, Fernando Gómez‐Chávez, Carlos Cedillo-Peláez, Mario Eugenio Cancino-Diaz · 2020 · Heliyon
96. Mutagenomics: A Rapid, High-Throughput Method to Identify Causative Mutations from a Genetic Screen
    Charles Hodgens, Nicole C. Chang, G. Eric Schaller, Joseph J. Kieber · 2020 · PLANT PHYSIOLOGY
97. Optimization and Engineering of a Self-Sufficient CYP102 Enzyme from Bacillus amyloliquefaciens towards Synthesis of In-Chain Hydroxy Fatty Acids
    Li Zong, Yan Zhang, Zhengkang Shao, Yingwu Wang, Zheng Guo, Renjun Gao, Bekir Engin Eser · 2021 · Catalysts
98. Identification of a new regulation pathway of EGFR and E-cadherin dynamics
    Véronique Proux‐Gillardeaux, Tamara Advedissian, Charlotte Périn, Jean‐Christophe Gelly, Mireille Viguier, Frédérique Deshayes · 2021 · Scientific Reports
99. Binding Mechanism of Inhibitors to CDK6 Deciphered by Multiple Independent Molecular Dynamics Simulations and Free Energy Predictions
    Lifei Wang, Yan Wang, Lulu Zhang, Juan Zhao, Shiliang Wu, Zhiyong Yang · 2025 · Molecules
100. A transcription factor from the cryptic Escherichia coli Rac prophage controls both phage and host operons
     Ewa Wons, Katarzyna Gucwa, Natalia Lewandowska, Aleksandra Wiśniewska, Lukasz Pawel Kozlowski, Iwona Mruk · 2025 · Nucleic Acids Research