Immunogenicity of intrathecal plasmid gene delivery: cytokine release and effects on transgene expression
Open accessAbstract
BACKGROUND: One method for the delivery of therapeutic proteins to the spinal cord is to inject nonviral gene vectors including plasmid DNA into the cerebrospinal fluid (CSF) that surrounds the spinal cord (intrathecal space). This approach has produced therapeutic benefits in animal models of disease and several months of protein expression; however, there is little information available on the immune response to these treatments in the intrathecal space, the relevance of plasmid CpG sequences to any plasmid-induced immune response, or the effect of this immune response on transgene expression. METHODS: In the present study, coding or noncoding plasmids were delivered to the intrathecal space of the lumbar spinal region in rats. Lumbosacral CSF was then collected at various time points afterwards for monitoring of cytokines and transgene expression. RESULTS: This work demonstrates, for the first time, increased tumor necrosis factor-alpha and interleukin-1 in response to intrathecal plasmid vector injection and provides evidence indicating that this response is largely absent in a CpG-depleted vector. Transgene expression in the CSF is not significantly affected by this immune response. Expression after intrathecal plasmid injection is variable across rats but correlates with the amount of tissue associated plasmid and is increased by disrupting normal CSF flow. CONCLUSIONS: The data obtained in the present study indicate that plasmid immunogenicity may affect intrathecal plasmid gene therapy safety but not transgene expression in the CSF. Furthermore, the development of methods to prevent loss of plasmid via CSF flow out of the central nervous system through the injection hole and/or natural outflow routes may increase intrathecal plasmid gene delivery efficacy.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Plasmid-based expression often leads to a longer duration of Cas9 protein, which may result in higher off-target effects and strong immune responses.
“In addition, the plasmid-based expression often leads to a longer duration of Cas9 protein, which may result in higher off-target effects and strong immune responses [95].”
From Non-viral delivery systems for CRISPR/Cas9-based genome editing: challenges and opportunities (2018) · cites this paper as [95]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
A peripheral mononeuropathy in rat that produces disorders of pain sensation like those seen in man
Bennett, G. J., & Xie, Y.-K. (1988) · Pain · doi:10.1016/0304-3959(88)90209-6 · Cited by 5,376 · see citing works
Hornung, V., Rothenfußer, S., Britsch, S., Krug, A., Jahrsdörfer, B., Giese, T., Endres, S., & Hartmann, G. (2002) · The Journal of Immunology · doi:10.4049/jimmunol.168.9.4531 · Cited by 1,927 · see citing works
TLR9 signals after translocating from the ER to CpG DNA in the lysosome
Latz, E., Schoenemeyer, A., Visintin, A., Fitzgerald, K. A., Monks, B. G., Knetter, C. F., Lien, E., Nilsen, N. J., Espevik, T., & Golenbock, D. T. (2004) · Nature Immunology · doi:10.1038/ni1028 · Cited by 1,355 · see citing works
Rachmilewitz, D., Katakura, K., Karmeli, F., Hayashi, T., Reinus, C., Rudensky, B., Akira, S., Takeda, K., Lee, J., Takabayashi, K., et al. (2004) · Gastroenterology · doi:10.1053/j.gastro.2003.11.019 · Cited by 859 · see citing works
Berger, J., Hauber, J., Hauber, R., Geiger, R. E., & Cullen, B. R. (1988) · Gene · doi:10.1016/0378-1119(88)90219-3 · Cited by 667 · see citing works
Statistical Methods for the Analysis of Repeated Measurements
Davis, C. S. (2002) · Springer texts in statistics · doi:10.1007/b97287 · Cited by 577 · see citing works
Physiology of the CSF and Blood-Brain Barriers
Davson, H., & Segal, M. B. (1996) · Medical Entomology and Zoology · Cited by 576 · see citing works
Macrophages ingest and are activated by bacterial DNA
Stacey, K. J., Sweet, M. J., & Hume, D. (1996) · The Journal of Immunology · doi:10.4049/jimmunol.157.5.2116 · Cited by 573 · see citing works
Contribution of CpG motifs to the immunogenicity of DNA vaccines
Klinman, D. M., Yamshchikov, G., & Ishigatsubo, Y. (1997) · The Journal of Immunology · doi:10.4049/jimmunol.158.8.3635 · Cited by 507 · see citing works
Toll‐like receptor 9 binds single‐stranded CpG‐DNA in a sequence‐ and pH‐dependent manner
Rutz, M., Metzger, J., Gellert, T., Luppa, P. B., Lipford, G. B., Wagner, H., & Bauer, S. (2004) · European Journal of Immunology · doi:10.1002/eji.200425218 · Cited by 499 · see citing works
Koh, L., Zakharov, A., & Johnston, M. G. (2005) · Cerebrospinal Fluid Research · doi:10.1186/1743-8454-2-6 · Cited by 298 · see citing works
Hu, P., Bembrick, A. L., Keay, K. A., & McLachlan, E. M. (2006) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2006.10.013 · Cited by 279 · see citing works
Yasuda, K., Yu, P., Kirschning, C. J., Schlatter, B., Schmitz, F., Heit, A., Bauer, S., Hochrein, H., & Wagner, H. (2005) · The Journal of Immunology · doi:10.4049/jimmunol.174.10.6129 · Cited by 256 · see citing works
Li, S., Wu, S.-P., Whitmore, M., Loeffert, E., Wang, L., Watkins, S. C., Pitt, B. R., & Huang, L. (1999) · American Journal of Physiology-Lung Cellular and Molecular Physiology · doi:10.1152/ajplung.1999.276.5.l796 · Cited by 225 · see citing works
CpG-Depleted Plasmid DNA Vectors with Enhanced Safety and Long-Term Gene Expression in Vivo
Yew, N. S., Zhao, H., Przybylska, M., Wu, I., Tousignant, J. D., Scheule, R. K., & Cheng, S. H. (2002) · Molecular Therapy · doi:10.1006/mthe.2002.0598 · Cited by 221 · see citing works
Yew, N. S., Zhao, H., Wu, I., Song, A., Tousignant, J. D., Przybylska, M., & Cheng, S. H. (2000) · Molecular Therapy · doi:10.1006/mthe.2000.0036 · Cited by 221 · see citing works
Yew, N. S., Wang, K. X., Przybylska, M., Bagley, R. G., Stedman, M. R., Marshall, J., Scheule, R., & Cheng, S. H. (1999) · Human Gene Therapy · doi:10.1089/10430349950019011 · Cited by 202 · see citing works
Milligan, E. D., Sloane, E. M., Langer, S. J., Hughes, T., Jekich, B. M., Frank, M. G., Mahoney, J. H., Levkoff, L. H., Maier, S. F., Cruz, P. E., et al. (2006) · Pain · doi:10.1016/j.pain.2006.07.009 · Cited by 175 · see citing works
Use of a Liver-Specific Promoter Reduces Immune Response to the Transgene in Adenoviral Vectors
Pastore, L., Morral, N., Zhou, H., Garcia, R. G. F., Parks, R. J., Kochanek, S., Graham, F. L., Lee, B., & Beaudet, A. L. (1999) · Human Gene Therapy · doi:10.1089/10430349950017455 · Cited by 168 · see citing works
Riu, E., Chen, Z.-Y., Xu, H., He, C.-Y., & Kay, M. A. (2007) · Molecular Therapy · doi:10.1038/sj.mt.6300177 · Cited by 148 · see citing works
Roberts, T. L., Sweet, M. J., Hume, D. A., & Stacey, K. J. (2005) · The Journal of Immunology · doi:10.4049/jimmunol.174.2.605 · Cited by 131 · see citing works
Cornélie, S., Hoebeke, J., Schacht, A., Bertin, B., Vicogne, J., Capron, M., & Riveau, G. J. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313406200 · Cited by 124 · see citing works
Inflammatory responses following direct injection of plasmid DNA into skeletal muscle
McMahon, J. M., Wells, K., Bamfo, J., Cartwright, M., & Wells, D. J. (1998) · Gene Therapy · doi:10.1038/sj.gt.3300718 · Cited by 105 · see citing works
Gao, J., Xue, Q., Papasian, C. J., & Morrison, D. C. (2001) · The Journal of Immunology · doi:10.4049/jimmunol.166.11.6855 · Cited by 86 · see citing works
Shi, L., Tang, G., Gao, S., X, Y., Liu, B. H., Li, Y., Zeng, J., Ng, Y. K., Leong, K. W., & Wang, S. (2003) · Gene Therapy · doi:10.1038/sj.gt.3301970 · Cited by 82 · see citing works
Hong, K., Sherley, J., & Lauffenburger, D. (2001) · Biomolecular Engineering · doi:10.1016/s1389-0344(01)00100-9 · Cited by 70 · see citing works
Interleukin-2 gene therapy of chronic neuropathic pain
Yao, M.-Z., Gu, J., Wang, J.-H., Sun, L., Lang, M.-F., Liu, J., Zhao, Z., & Liu, X.-Y. (2002) · Neuroscience · doi:10.1016/s0306-4522(02)00078-7 · Cited by 67 · see citing works
Wang, X., Wang, C., Zeng, J., Xu, X., Hwang, P. Y. K., Yee, W.-C., Ng, Y., & Wang, S. (2005) · Molecular Therapy · doi:10.1016/j.ymthe.2005.03.032 · Cited by 64 · see citing works
Intracisternally Localized Bacterial DNA Containing CpG Motifs Induces Meningitis
Deng, G., Liu, Z.-Q., & Tarkowski, A. (2001) · The Journal of Immunology · doi:10.4049/jimmunol.167.8.4616 · Cited by 63 · see citing works
Gene Expression along the Cerebral-Spinal Axis after Regional Gene Delivery
Meuli‐Simmen, C., Liu, Y., Yeo, T. T. S., Liggitt, D., Tu, G., Yang, T., Meuli, M., Knauer, S., Heath, T. D., Longo, F. M., et al. (1999) · Human Gene Therapy · doi:10.1089/10430349950016735 · Cited by 36 · see citing works
Wu, C.-M., Lin, M.-W., Cheng, J.-T., Wang, Y.-M., Huang, Y.-W., Sun, W.-Z., & Lin, C.-R. (2004) · Gene Therapy · doi:10.1038/sj.gt.3302244 · Cited by 35 · see citing works
Intrathecal Injection of Naked Plasmid DNA Provides Long-term Expression of Secreted Proteins
Hughes, T., Langer, S. J., Johnson, K. W., Chavez, R. A., Watkins, L. R., Milligan, E. D., & Leinwand, L. A. (2008) · Molecular Therapy · doi:10.1038/mt.2008.230 · Cited by 32 · see citing works
Effects of Inflammatory Response on In Vivo Transgene Expression by Plasmid DNA in Mice
Kako, K., Nishikawa, M., Yoshida, H., & Takakura, Y. (2007) · Journal of Pharmaceutical Sciences · doi:10.1002/jps.21254 · Cited by 32 · see citing works
Interleukin-2 gene has superior antinociceptive effects when delivered intrathecally
Yao, M., Wang, J.-H., Gu, J., Sun, L., Liu, H., Zhao, Z., & Liu, X. (2002) · Neuroreport · doi:10.1097/00001756-200205070-00011 · Cited by 25 · see citing works
Continuous measurement of cerebrospinal fluid pressure in unrestrained rats
Mandell, E. C., & Zimmermann, E. (1980) · Physiology & Behavior · doi:10.1016/0031-9384(80)90105-5 · Cited by 23 · see citing works
Munson, T. E. (1985) · PubMed · Cited by 18 · see citing works
Lee, T.-H., Yang, L.-C., Chou, A., Wu, P.-C., Lin, C., Wang, C.-H., Chen, J.-T., & Tang, C.-S. (2003) · Pain · doi:10.1016/s0304-3959(02)00496-7 · Cited by 16 · see citing works
Chen, K., Wu, C., Tseng, C.-C. A., Shiau, J.-P., Lee, C., & Lin, C. (2007) · The Journal of Gene Medicine · doi:10.1002/jgm.1132 · Cited by 13 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Non-viral delivery systems for CRISPR/Cas9-based genome editing: challenges and opportunities
Li, L., Hu, S., & Chen, X. (2018) · Biomaterials · doi:10.1016/j.biomaterials.2018.04.031 · Cited by 415 · see citing works
Engineering the delivery system for CRISPR-based genome editing
Glass, Z., Lee, M., Li, Y., & Xu, Q. (2018) · Trends in biotechnology · doi:10.1016/j.tibtech.2017.11.006 · Cited by 345 · see citing works
Spinal Interleukin-10 Therapy to Treat Peripheral Neuropathic Pain
Milligan, E. D., Penzkover, K. R., Soderquist, R. G., & Mahoney, M. J. (2012) · Neuromodulation Technology at the Neural Interface · doi:10.1111/j.1525-1403.2012.00462.x · Cited by 92 · see citing works
Harnessing nanoparticles for the efficient delivery of the CRISPR/Cas9 system
Rahimi, H., Salehiabar, M., Charmi, J., Barsbay, M., Ghaffarlou, M., Razlighi, M. R., Davaran, S., Khalilov, R. I., Sugiyama, M., Nosrati, H., et al. (2020) · Nano Today · doi:10.1016/j.nantod.2020.100895 · Cited by 83 · see citing works
Synthetic multi-layer nanoparticles for CRISPR-Cas9 genome editing
Tang, H., Zhao, X., & Jiang, X. (2020) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2020.03.001 · Cited by 76 · see citing works
Nanotechnology based CRISPR/Cas9 system delivery for genome editing: Progress and prospect
Deng, H., Huang, W., & Zhang, Z. (2019) · Nano Research · doi:10.1007/s12274-019-2465-x · Cited by 69 · see citing works
Delivery of CRISPR/Cas9 by Novel Strategies for Gene Therapy
Wang, L., Zheng, W., Liu, S., Li, B. J., & Jiang, X. (2018) · ChemBioChem · doi:10.1002/cbic.201800629 · Cited by 65 · see citing works
Dengler, E. C., Alberti, L. A., Bowman, B. N., Kerwin, A. A., Wilkerson, J. L., Moezzi, D. R., Limanovich, E., Wallace, J. A., & Milligan, E. D. (2014) · Journal of Neuroinflammation · doi:10.1186/1742-2094-11-92 · Cited by 56 · see citing works
Intelligent nanotherapeutic strategies for the delivery of CRISPR system
Chen, C., Zhong, W., Du, S., Li, Y., Zeng, Y., Liu, K., Yang, J., Guan, X., & Han, X. (2022) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2022.12.013 · Cited by 54 · see citing works
TLR9 Ligand CpG-ODN Applied to the Injured Mouse Cornea Elicits Retinal Inflammation
Chinnery, H. R., McLenachan, S., Binz, N., Sun, Y., Forrester, J. V., Degli-Esposti, M. A., Pearlman, E., & McMenamin, P. G. (2012) · The American Journal of Pathology · doi:10.1016/j.ajpath.2011.09.041 · Cited by 46 · see citing works
Highly efficient CRISPR-mediated genome editing through microfluidic droplet cell mechanoporation
Kim, Y.-J., Yun, D., Lee, J. K., Jung, C., & Chung, A. J. (2024) · Nature Communications · doi:10.1038/s41467-024-52493-1 · Cited by 39 · see citing works
Advancing cancer gene therapy: the emerging role of nanoparticle delivery systems
Wang, M., Liu, H., Huang, J., Cai, T., Xu, Z. P., & Zhang, L. L. (2025) · Journal of Nanobiotechnology · doi:10.1186/s12951-025-03433-8 · Cited by 36 · see citing works
Qiu, M., Glass, Z., & Xu, Q. (2019) · Biomacromolecules · doi:10.1021/acs.biomac.9b00783 · Cited by 30 · see citing works
Holló, K., Ducza, L., Hegyi, Z., Dócs, K., Hegedűs, K., Bakk, E., Papp, I., Kis, G. N., Mészár, Z., Bardóczi, Z., et al. (2017) · Journal of Neuroinflammation · doi:10.1186/s12974-017-0902-x · Cited by 29 · see citing works
Coroadinha, A. S. (2023) · Cells · doi:10.3390/cells12050732 · Cited by 25 · see citing works
Ex vivo nonviral gene delivery of μ-opioid receptor to attenuate cancer-induced pain
Yamano, S., Viet, C. T., Dang, D., Dai, J., Hanatani, S., Takayama, T., Kasai, H., Imamura, K., Campbell, R., Ye, Y., et al. (2016) · Pain · doi:10.1097/j.pain.0000000000000750 · Cited by 21 · see citing works
Mohr, M., Damas, N. D., Gudmand‐Hoeyer, J., Zeeberg, K., Jędrzejczyk, D., Vlassis, A., Morera-Gómez, M., Pereira, S., Puš, U., Oliver-Almirall, A., et al. (2023) · ACS Synthetic Biology · doi:10.1021/acssynbio.2c00179 · Cited by 18 · see citing works
CRISPR delivery systems for organ-specific targeting: Advances and challenges
Du, J., Wu, Q., Liu, C., Wang, N., & Gong, C. (2025) · Precision medicine and engineering. · doi:10.1016/j.preme.2025.100048 · Cited by 17 · see citing works
Latest progress in the study of nanoparticle-based delivery of the CRISPR/Cas9 system
Yu, M., Liu, X., Cheng, H., Kuang, L., Zhang, S., & Yan, X. (2021) · Methods · doi:10.1016/j.ymeth.2021.06.004 · Cited by 15 · see citing works
Insights into Prime Editing Technology: A Deep Dive into Fundamentals, Potentials, and Challenges
Hosseini, S. Y., Mallick, R., Mäkinen, P., & Ylä‐Herttuala, S. (2024) · Human Gene Therapy · doi:10.1089/hum.2024.043 · Cited by 12 · see citing works
Hosseini, S. Y., Mallick, R., Mäkinen, P., & Ylä‐Herttuala, S. (2024) · Expert Review of Cardiovascular Therapy · doi:10.1080/14779072.2024.2328642 · Cited by 6 · see citing works
Saha, T., Saha, R. P., Singh, M. K., Priya, K., Singh, S., Rajeev, M., Bhattacharya, D., Nag, M., & Lahiri, D. (2025) · Molecular Biology Reports · doi:10.1007/s11033-025-10674-1 · Cited by 5 · see citing works
Polymer-Mediated Delivery of CRISPR-Cas9 Genome-Editing Therapeutics for CNS Disease
Iqbal, S., Alexander-Bryant, A. A., & Larsen, J. (2022) · Springer eBooks · doi:10.1007/978-3-031-11409-0_6 · Cited by 3 · see citing works
Renovating Neural Networks With Viral‐Mediated Gene Transfer From A Tissue Contacting Matrix Mimic
Dehnavi, S. S., Mahmoudi, N., Wang, Y., Cheeseman, S., Ferreira, R., Hannan, R. D., Lisowski, L., Craig, V. S. J., Moriarty, N., Parish, C. L., et al. (2026) · Small · doi:10.1002/smll.202510539 · Cited by 2 · see citing works
Preclinical Evaluation of Neuraxial Drugs for Safety
Yaksh, T. L., Boyd, R. B., & Keifer, O. P. (2023) · Springer eBooks · doi:10.1007/978-3-031-39558-1_12
Peptide-Assisted CRISPR/Cas9 Delivery to Tumors
Gustafsson, O., Andaloussi, S. E., & Nordin, J. Z. (2025) · Methods in pharmacology and toxicology · doi:10.1007/978-1-0716-4374-7_8
Sung, W., Li, T., & Takeoka, S. (2026) · Frontiers in Genome Editing · doi:10.3389/fgeed.2026.1888079
- Authors
- Hughes, T. S., Langer, S. J., Virtanen, S. I., Chavez, R. A., Watkins, L. R., Milligan, E. D., & Leinwand, L. A.
- Affiliations
- University of Colorado Boulder (US)
- University of New Mexico (US)
- Corresponding author
- Leinwand, Leslie A.
- ORCID
- Venue
- The Journal of Gene Medicine
- Publisher
- Wiley
- Published
- 2009-06-16
- Volume
- 11
- Issue
- 9
- Pages
- 782-790
- ISSN
- 1099-498X (ISSN-L)
- 1521-2254
- PMC
- PMC3649870
- OpenAlex
- W1990187837
- Cited by
- 28
- References
- 38
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 3 · 2023: 3 · 2022: 2 · 2021: 2 · 2020: 2 · 2019: 2 · 2018: 3 · 2017: 1 · 2016: 1 · 2014: 1 · 2012: 1
- FWCI
- 0.27
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- The Journal of Gene Medicine (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Institute on Drug Abuse (K02DA015642, DA024044, DA 015642, R01DA018156, K05DA024044, DA 018156)
- National Institute of General Medical Sciences (GM 29090, R01GM029090)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Keywords
- intrathecal gene delivery, plasmid DNA, immunogenicity, cytokine production, TNF-α, interleukin-1, CpG sequences, transgene expression, cerebrospinal fluid, lumbar spinal cord, cerebrospinal fluid flow, non-viral vectors, gene therapy safety
- MeSH terms
- Animals, Cell Line, Humans, Injections, Spinal, Male, Plasmids, Transfection, Genetic Therapy, Gene Expression, Cytokines, Rats, Sprague-Dawley, CpG Islands, Transgenes, Toll-Like Receptor 9, Rats
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review