Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
Uversky, Vladimir N., Oldfield, Christopher J., Dunker, A. Keith·2005·Journal of Molecular Recognition
DOI 10.1002/jmr.747
Cited by (847)
Items 201–300 of 847
- Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic coreKimmo I. Rantalainen, Vladimir Nikolaevich Uversky, Perttu Permi, Nisse Kalkkinen, A. Keith Dunker, Kristiina M. Mäkinen · 2008 · Virology
- Structure and behaviour of biomolecules from Raman optical activityL BARRON · 2006 · Current Opinion in Structural Biology
- Multi-Scaled Explorations of Binding-Induced Folding of Intrinsically Disordered Protein Inhibitor IA3 to its Target EnzymeJin Wang, Yong Wang, Xiakun Chu, Stephen J. Hagen, Wei Han, Erkang Wang · 2011 · PLoS Computational Biology
- Computational Prediction of MoRFs, Short Disorder-to-order Transitioning Protein Binding RegionsAkila Katuwawala, Zhenling Peng, Jianyi Yang, Lukasz Kurgan · 2019 · Computational and Structural Biotechnology Journal
- Structural and Dynamic Characterization of Intrinsically Disordered Human Securin by NMR SpectroscopyVeronika Csizmók, Isabella C. Felli, Péter Tompa, Lucia Banci, Ivano Bertini · 2008 · Journal of the American Chemical Society
- Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental StudiesJennifer D. Atkins, Samuel Y. Boateng, Thomas Lykke-Møller Sørensen, Liam James McGuffin · 2015 · International Journal of Molecular Sciences
- Life in Phases: Intra- and Inter- Molecular Phase Transitions in Protein SolutionsV. Uversky, A. Finkelstein · 2019 · Biomolecules
- Nucleocapsid Structure and FunctionSonia Longhi · 2008 · Current topics in microbiology and immunology
- Order by disorder in plant signalingBirthe Brandt Kragelund, Michael Krogh Jensen, Karen Skriver · 2012 · Trends in Plant Science
- Computational Prediction of O-linked Glycosylation Sites that Preferentially Map on Intrinsically Disordered Regions of Extracellular ProteinsIkuko Nishikawa, Yukiko Nakajima, Masahiro Ito, Satoshi Fukuchi, Keiichi Homma, Ken Nishikawa · 2010 · International Journal of Molecular Sciences
- Demonstration of a Folding after Binding Mechanism in the Recognition between the Measles Virus N TAIL and X DomainsMarion Dosnon, Daniela Bonetti, Angela Morrone, Jenny Erales, Eva Di Silvio, Sonia Longhi, Stefano Gianni · 2014 · ACS Chemical Biology
- Intrinsically Disordered Proteins in Chronic DiseasesPrakash Kulkarni, Vladimir Nikolaevich Uversky · 2019 · Biomolecules
- Intrinsically disordered proteins and proteins with intrinsically disordered regions in neurodegenerative diseasesOrkid Coskuner‐Weber, Ozan Mirzanli, Vladimir Nikolaevich Uversky · 2022 · Biophysical Reviews
- Binding Specificity of Escherichia coli Single-Stranded DNA Binding Protein for the χ Subunit of DNA pol III Holoenzyme and PriA HelicaseAlexander G. Kozlov, Maria J. Jezewska, Wlodzimierz Bujalowski, Timothy M. Lohman · 2010 · Biochemistry
- Structural biases in disordered proteins are prevalent in the cellDAVID C. MOSES, Karina C. Guadalupe, Feng Yu, Eduardo Flores, Anthony R. Perez, Ralph L. McAnelly, Nora M. Shamoon, Gagandeep Kaur, Estefania Cuevas-Zepeda, Andrea D. Merg et al. · 2024 · Nature Structural & Molecular Biology
- Disordered Flanks Prevent Peptide AggregationSanne Abeln, Daan Frenkel · 2008 · PLoS Computational Biology
- High levels of structural disorder in scaffold proteins as exemplified by a novel neuronal protein, CASK‐interactive protein1Annamária Balázs, Veronika Csizmók, László Buday, Marianna Rakács, Robert Kiss, M. Bokor, Roopesh Udupa, Kalman Tompa, Péter Tompa · 2009 · FEBS Journal
- Topology‐based modeling of intrinsically disordered proteins: Balancing intrinsic folding and intermolecular interactionsDebabani Ganguly, Jianhan Chen · 2010 · Proteins Structure Function and Bioinformatics
- A unified mechanism for protein folding: Predetermined pathways with optional errorsKrishna M.G. Mallela, S. Walter Englander · 2007 · Protein Science
- Antimicrobial potentials and structural disorder of human and animal defensinsEhab H. Mattar, Hussein A. Almehdar, haitham ahmed yacoub, Vladimir Nikolaevich Uversky, Elrashdy M Moustafa Mohamed Redwan · 2015 · Cytokine & Growth Factor Reviews
- Structural and functional relationships of the steroid hormone receptors’ N-terminal transactivation domainRaj Kumar, Gerald Litwack · 2009 · Steroids
- Order propensity of an intrinsically disordered protein, the cyclin‐dependent‐kinase inhibitor Sic1Stefania Brocca, Mária Šamalíková, Vladimir Nikolaevich Uversky, Marina Lotti, Marco Vanoni, Lilia Alberghina, Rita Grandori · 2009 · Proteins Structure Function and Bioinformatics
- Prediction of leucine-rich nuclear export signal containing proteins with NESsentialSzu-Chin Fu, Kenichiro Imai, Paul Horton · 2011 · Nucleic Acids Research
- Intrinsic disorder in yeast transcriptional regulatory networkGajinder Pal Singh, Debasis Dash · 2007 · Proteins Structure Function and Bioinformatics
- Analysis of structured and intrinsically disordered regions of transmembrane proteinsBin Xue, Liwei Li, Samy O. Meroueh, Vladimir Nikolaevich Uversky, A. Keith Dunker · 2009 · Molecular BioSystems
- Unfoldomics of Human Genetic Diseases: Illustrative Examples of Ordered and Intrinsically Disordered Members of the Human DiseasomeUros Midic, Christopher J. Oldfield, A. Keith Dunker, Zoran Obradovic A, Vladimir Nikolaevich Uversky · 2009 · Protein and Peptide Letters
- Protein intrinsic disorder toolbox for comparative analysis of viral proteinsGerard Kian‐Meng Goh, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2008 · BMC Genomics
- Utilization of protein intrinsic disorder knowledge in structural proteomicsChristopher J. Oldfield, Bin Xue, Ya-Yue J. Van, Eldon L. Ulrich, John L. Markley, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2012 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Genome-Wide Analysis of Protein Disorder in Arabidopsis thaliana: Implications for Plant Environmental AdaptationNatalia Pietrosemoli, Juan Antonio García-Martín, Roberto Solano, Florencio Pazos · 2013 · PLoS ONE
- Conformational Analysis of the Partially Disordered Measles Virus NTAIL-XD Complex by SDSL EPR SpectroscopyAleh Kavalenka, Iztok Urbančič, Valérie Belle, Sabrina Rouger, Stéphanie Costanzo, Sandra Kure, André Fournel, Sonia Longhi, Bruno Guigliarelli, Janez Štrancar · 2010 · Biophysical Journal
- Solution Conformation, Backbone Dynamics and Lipid Interactions of the Intrinsically Unstructured Malaria Surface Protein MSP2Xuecheng Zhang, Matthew A. Perugini, Shenggen Yao, Christopher G. Adda, Vincent J. Murphy, Andrew Low, Robin F. Anders, Raymond S. Norton · 2008 · Journal of Molecular Biology
- Intrinsically disordered proteins may escape unwanted interactions via functional misfoldingVladimir Nikolaevich Uversky · 2011 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Supertertiary structure of the synaptic MAGuK scaffold proteins is conservedJames J. McCann, Liqiang Zheng, Daniel Rohrbeck, Suren Felekyan, Ralf Kühnemuth, Roger Bryan Sutton, Claus A. M. Seidel, Mark E. Bowen · 2012 · Proceedings of the National Academy of Sciences
- Intrinsic disorder associated with 14-3-3 proteins and their partnersNikolai N. Sluchanko, Diego M. Bustos · 2019 · Progress in molecular biology and translational science
- DEPICTER: Intrinsic Disorder and Disorder Function Prediction ServerAmita Barik, Akila Katuwawala, Jack Hanson, Kuldip K. Paliwal, Yaoqi Zhou, Lukasz Kurgan · 2019 · Journal of Molecular Biology
- Expression and Localization of RGS9-2/Gβ5/R7BP ComplexIn VivoIs Set by Dynamic Control of Its Constitutive Degradation by Cellular Cysteine ProteasesGarret R. Anderson, Rafael Luján, Arthur Semenov, Marco Pravetoni, Ekaterina N. Posokhova, Joseph H. Song, Vladimir Nikolaevich Uversky, Ching-Kang Chen, Kevin D. Wickman, Kirill A. Martemyanov · 2007 · Journal of Neuroscience
- Relating gas phase to solution conformations: Lessons from disordered proteinsRebecca Beveridge, Ashley S. Phillips, Laetitia Denbigh, Hassan M. Saleem, Cait E. MacPhee, Perdita E. Barran · 2015 · PROTEOMICS
- A comparative analysis of viral matrix proteins using disorder predictorsGerard Kian‐Meng Goh, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2008 · Virology Journal
- Predicting mostly disordered proteins by using structure-unknown protein dataKana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi · 2007 · BMC Bioinformatics
- Quantifying the topography of the intrinsic energy landscape of flexible biomolecular recognitionChu, Xiakun, Gan, Linfeng, Wang, Erkang, Wang, Jin · 2013 · Proceedings of the National Academy of Sciences
- Intrinsic disorder in the C-terminal domain of the Shaker voltage-activated K + channel modulates its interaction with scaffold proteinsElhanan Magidovich, Irit Orr, Deborah Fass, Uri Abdu, Ofer Yifrach · 2007 · Proceedings of the National Academy of Sciences
- Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction NetworkKana Shimizu, Hiroyuki Toh · 2009 · Journal of Molecular Biology
- Conformational propensities and residual structures in unfolded peptides and proteinsReinhard Schweitzer‐Stenner · 2011 · Molecular BioSystems
- Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza HemagglutininJesse D. Bloom, Matthew Glassman · 2009 · PLoS Computational Biology
- Novel Strategies for Drug Discovery Based on Intrinsically Disordered Proteins (IDPs)Jihua Wang, Zanxia Cao, Liling Zhao, Shuqiang Li · 2011 · International Journal of Molecular Sciences
- Molecular Dynamics Simulations Combined with Nuclear Magnetic Resonance and/or Small-Angle X-ray Scattering Data for Characterizing Intrinsically Disordered Protein Conformational EnsemblesMaud Chan-Yao-Chong, DURAND Dominique Christiane, Tâp Ha‐Duong · 2019 · Journal of Chemical Information and Modeling
- Protein intrinsic disorder in plantsFlorencio Pazos, Natalia Pietrosemoli, Juan Antonio García-Martín, Roberto Solano · 2013 · Frontiers in Plant Science
- Synuclein-γ Targeting Peptide Inhibitor that Enhances Sensitivity of Breast Cancer Cells to Antimicrotubule DrugsVinay Kumar Singh, Yue Zhou, Joseph A. Marsh, Vladimir Nikolaevich Uversky, Julie Deborah Forman-Kay, Jingwen Liu, Zongchao Jia · 2007 · Cancer Research
- Protein Conformational Disorder and Enzyme CatalysisCindy Schulenburg, Donald Hilvert · 2013 · Topics in current chemistry
- Kinetics of Folding and Binding of an Intrinsically Disordered Protein: The Inhibitor of Yeast Aspartic Proteinase YPrARanjani Narayanan, Omjoy K. Ganesh, Arthur S. Edison, Stephen J. Hagen · 2008 · Journal of the American Chemical Society
- Comparison of Structure Determination Methods for Intrinsically Disordered Amyloid-β PeptidesK. Aurelia Ball, David E. Wemmer, Teresa L. Head-Gordon · 2014 · The Journal of Physical Chemistry B
- Resolving the ambiguity: Making sense of intrinsic disorder when PDB structures disagreeShelly DeForte, Vladimir Nikolaevich Uversky · 2015 · Protein Science
- RAPID: Fast and accurate sequence-based prediction of intrinsic disorder content on proteomic scaleJing Ru Yan, Marcin J. Mizianty, Paul L. Filipow, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2013 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Intrinsically disordered proteins in the nucleus of human cellsTelma Frege, Vladimir Nikolaevich Uversky · 2015 · Biochemistry and Biophysics Reports
- At Low Concentrations, 3,4-Dihydroxyphenylacetic Acid (DOPAC) Binds Non-Covalently to α-Synuclein and Prevents Its FibrillationWenbo Zhou, Amy Gallagher, Dong-Pyo Hong, Chunmei Long, Anthony L. Fink, Vladimir Nikolaevich Uversky · 2009 · Journal of Molecular Biology
- Prepaying the entropic cost for allosteric regulation in KIXS. Law, Jessica K. Gagnon, A. Mapp, C. Brooks · 2014 · Proceedings of the National Academy of Sciences of the United States of America
- The intrinsic disorder alphabet. III. Dual personality of serineVladimir Nikolaevich Uversky · 2015 · Intrinsically Disordered Proteins
- Structure, properties, and functions of the human small heat‐shock protein HSP22 (HspB8, H11, E2IG1): A critical reviewAnton A. Shemetov, Alim S. Seit‐Nebi, Nikolai B. Gusev · 2007 · Journal of Neuroscience Research
- Probing Structural Transitions in the Intrinsically Disordered C-Terminal Domain of the Measles Virus Nucleoprotein by Vibrational Spectroscopy of Cyanylated CysteinesConnor G. Bischak, Sonia Longhi, David Snead, Stéphanie Costanzo, Elodie Terrer, Casey H. Londergan · 2010 · Biophysical Journal
- Quantitative Biophysical Characterization of Intrinsically Disordered ProteinsEric B. Gibbs, Scott A. Showalter · 2015 · Biochemistry
- The solvent side of proteinaceous membrane-less organelles in light of aqueous two-phase systemsBoris Y. Zaslavsky, Luísa A. Ferreira, April L. Darling, Vladimir Nikolaevich Uversky · 2018 · International Journal of Biological Macromolecules
- Protein intrinsic disorder in the acetylome of intracellular and extracellular Toxoplasma gondiiBin Xue, Victoria Jeffers, William J. Sullivan, Vladimir Nikolaevich Uversky · 2013 · Molecular BioSystems
- Biochemical and Structural Characterization of the Pak1-LC8 InteractionChristine M. Lightcap, Shangjin Sun, James D. Lear, Ulrich Rodeck, Tatyana E. Polenova, John C. Williams · 2008 · Journal of Biological Chemistry
- Backbone Dynamics of the 18.5kDa Isoform of Myelin Basic Protein Reveals Transient α-Helices and a Calmodulin-Binding SiteDavid S. Libich, George Harauz · 2008 · Biophysical Journal
- Under‐folded proteins: Conformational ensembles and their roles in protein folding, function, and pathogenesisVladimir Nikolaevich Uversky · 2013 · Biopolymers
- Targeting Intrinsically Disordered Proteins through Dynamic InteractionsJianlin Chen, Xiaorong Liu, Jianhan Chen · 2020 · Biomolecules
- Synergistic folding of two intrinsically disordered proteins: searching for conformational selectionDebabani Ganguly, Weihong Zhang, Jianhan Chen · 2011 · Molecular BioSystems
- Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutantsMasayoshi Onitsuka, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka · 2008 · Proteins Structure Function and Bioinformatics
- Significant antibacterial activity and synergistic effects of camel lactoferrin with antibiotics against methicillin-resistant Staphylococcus aureus (MRSA)Elrashdy M. Redwan, Nawal Abd El‐Baky, Ahmed Mahmoud Al-Hejin, Mohammed Nabih Baeshen, Hussein A. Almehdar, Abdulrahman Elsaway, Abu-Bakr Mahmoud Gomaa, Saad B. Almasaudi, Fahad A. Alfassi, Isam Eldin AbuZeid et al. · 2016 · Research in Microbiology
- Computational Prediction of Intrinsic Disorder in ProteinsFanchi Meng, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2017 · Current Protocols in Protein Science
- Intrinsic Disorder in Proteins Involved in the Innate Antiviral Immunity: Another Flexible Side of a Molecular Arms RaceBin Xue, Vladimir Nikolaevich Uversky · 2013 · Journal of Molecular Biology
- Biological messiness vs. biological genius: Mechanistic aspects and roles of protein promiscuityWilliam M. Atkins · 2014 · The Journal of Steroid Biochemistry and Molecular Biology
- Large-scale prediction of long disordered regions in proteins using random forestsPengfei Han, Xiuzhen Zhang, Raymond S. Norton, Zhiping Feng · 2009 · BMC Bioinformatics
- Fuzzy regions in an intrinsically disordered protein impair protein–protein interactionsAntoine Gruet, Marion Dosnon, David Blocquel, Joanna Brunel, Denis Gerlier, Rahul Kumar Das, Daniela Bonetti, Stefano Gianni, Mónika Fuxreiter, Sonia Longhi et al. · 2015 · FEBS Journal
- Control of Intrinsically Disordered Stathmin by Multisite PhosphorylationHonnappa Srinivas, Wolfgang Jahnke, Joachim Seelig, Michel Olivier Steinmetz · 2006 · Journal of Biological Chemistry
- Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12Hiroyoshi Matsumura, Akihiro Kai, Takayuki Maeda, Masahiro Tamoi, Atsuko Satoh, H. Tamura, Mika Hirose, Taketo Ogawa, Natsuko Kizu, Akira Wadano et al. · 2011 · Structure
- Biochemical characterization of small heat shock protein HspB8 (Hsp22)–Bag3 interactionAnton A. Shemetov, Nikolai B. Gusev · 2011 · Archives of Biochemistry and Biophysics
- Tryptophan Solvent Exposure in Folded and Unfolded States of an SH3 Domain by 19 F and 1 H NMRFerenc Evanics, Irina Bezsonova, Joseph A. Marsh, Julianne L. Kitevski-LeBlanc, Julie Deborah Forman-Kay, Robert Scott Prosser · 2006 · Biochemistry
- Assessing induced folding within the intrinsically disordered C-terminal domain of theHenipavirusnucleoproteins by site-directed spin labeling EPR spectroscopyMarlène Martinho, Johnny Habchi, Zeina El Habre, Leo Nesme, Bruno Guigliarelli, Valérie Belle, Sonia Longhi · 2012 · Journal of Biomolecular Structure and Dynamics
- The rational design of biological complexity: A deceptive metaphorMarc H.V. Van Regenmortel · 2007 · PROTEOMICS
- Intrinsically Disordered Structure of Bacillus pasteurii UreG As Revealed by Steady-State and Time-Resolved Fluorescence SpectroscopyPaolo Neyroz, Barbara Zambelli, Stefano Ciurli · 2006 · Biochemistry
- Requirements for empirical immunogenicity trials, rather than structure-based design, for developing an effective HIV vaccineMarc H.V. Van Regenmortel · 2011 · Archives of Virology
- Accuracy of protein-level disorder predictionsAkila Katuwawala, Christopher J. Oldfield, Lukasz Kurgan · 2019 · Briefings in Bioinformatics
- Solubility and Aggregation of Gly5 in WaterDeepti Karandur, Ka‐Yiu Wong, Bernard Montgomery Pettitt · 2014 · The Journal of Physical Chemistry B
- Limitations to the structure‐based design of HIV‐1 vaccine immunogensMarc H.V. Van Regenmortel · 2011 · Journal of Molecular Recognition
- The Roles of Intrinsic Disorder in Orchestrating the Wnt-PathwayBin Xue, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2012 · Journal of Biomolecular Structure and Dynamics
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- Protein structure–function continuum model: Emerging nexuses between specificity, evolution, and structureMunishwar Nath Gupta, Vladimir Nikolaevich Uversky · 2024 · Protein Science
- In various protein complexes, disordered protomers have large per‐residue surface areas and area of protein‐, DNA‐ and RNA‐binding interfacesZhonghua Wu, Gang Hu, Jianyi Yang, Zhenling Peng, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2015 · FEBS Letters
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- DRM1 and DRM2 expression regulation: potential role of splice variants in response to stress and environmental factors in ArabidopsisGeorgina M. Rae, Vladimir Nikolaevich Uversky, Karine Myriam David, Marion Wood · 2014 · Molecular Genetics and Genomics
- Role of Enthalpy–Entropy Compensation Interactions in Determining the Conformational Propensities of Amino Acid Residues in Unfolded Peptides.Siobhan E. Toal, Daniel Verbaro, Reinhard Schweitzer‐Stenner · 2014 · The Journal of Physical Chemistry B
- How order and disorder within paramyxoviral nucleoproteins and phosphoproteins orchestrate the molecular interplay of transcription and replicationSonia Longhi, Louis-Marie Bloyet, Stefano Gianni, Denis Gerlier · 2017 · Cellular and Molecular Life Sciences
- Identifying Disordered Regions in Proteins by Limited ProteolysisAngelo Fontana, Patrizia Polverino de Laureto, Barbara Spolaore, Erica Frare · 2012 · Methods in molecular biology
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- Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteinsLukasz Kurgan, Gang Hu, Kui Wang, Sina Ghadermarzi, Bi Zhao, Nawar Malhis, Gábor Erdős, Jörg A. Gsponer, Vladimir Nikolaevich Uversky, Zsuzsanna Dosztányi · 2023 · Nature Protocols
- Multispecific Recognition: Mechanism, Evolution, and DesignAriel Erijman, Yonatan Aizner, Julia M. Shifman · 2011 · Biochemistry
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- The intrinsically disordered structural platform of the plant defence hub protein RPM 1‐interacting protein 4 provides insights into its mode of action in the host‐pathogen interface and evolution of the nitrate‐induced domain protein familyXiaolin Sun, David R. Greenwood, Matthew D. Templeton, David S. Libich, Tony K. McGhie, Bin Xue, Minsoo Yoon, Wei Cui, Christopher A. Kirk, William T. Jones et al. · 2014 · FEBS Journal
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