Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

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1. The contribution of protein intrinsic disorder to understand the role of genetic variants uncovered by autism spectrum disorders exome studies
   Jaqueline Bohrer Schuch, Vanessa Rodrigues Paixão‐Côrtes, Deise C. Friedrich, Luciana Tovo‐Rodrigues · 2016 · American Journal of Medical Genetics Part B Neuropsychiatric Genetics
2. IDPs and their complexes in GPCR and nuclear receptor signaling
   Myriam Guillien, Albane le Maire, Assia Mouhand, Pau Bernadó, William Bourguet, Jean‐Louis Banères, Nathalie Sibille · 2020 · Progress in molecular biology and translational science
3. Intrinsic disorder in protein sense-antisense recognition.
   Guy W. Dayhoff, M. V. van Regenmortel, V. Uversky · 2020 · Journal of Molecular Recognition
4. Bioinformatics Approaches to the Structure and Function of Intrinsically Disordered Proteins
   Zsuzsanna Dosztányi, Péter Tompa · 2017 · Springer eBooks
5. Structure and Behavior of Biomolecules from Raman Optical Activity
   Laurence David Barron, Lutz Hecht · 2012 · Wiley eBooks
6. Functional diversity of intrinsically disordered proteins and their structural heterogeneity: Protein structure-function continuum
   Vladimir Nikolaevich Uversky · 2025 · Progress in molecular biology and translational science
7. High-resolution structural characterization of Noxa, an intrinsically disordered protein, by microsecond molecular dynamics simulations
   Michel Espinoza-Fonseca, Ameeta Kelekar · 2015 · Molecular BioSystems
8. On the Need to Develop Guidelines for Characterizing and Reporting Intrinsic Disorder in Proteins
   Michael P. Vincent, Vladimir Nikolaevich Uversky, Santiago D. Schnell · 2019 · PROTEOMICS
9. Expanding the Disorder-Function Paradigm in the C-Terminal Tails of Erbbs
   Louise Pinet, Nadine Assrir, Carine van Heijenoort · 2021 · Biomolecules
10. Tilting the Balance between Canonical and Noncanonical Conformations for the H1 Hypervariable Loop of a Llama VHH through Point Mutations
    Sai Pooja Mahajan, Camilo Velez‐Vega, Fernando A. Escobedo · 2012 · The Journal of Physical Chemistry B
11. A sequence-based computational method for prediction of MoRFs
    Yu Wang, Yanzhi Guo, Xuemei Pu, Menglong Li · 2017 · RSC Advances
12. Optimizing Epitope Conformational Ensembles Using α-Synuclein Cyclic Peptide “Glycindel” Scaffolds: A Customized Immunogen Method for Generating Oligomer-Selective Antibodies for Parkinson’s Disease
    Hsueh, Shawn C. C., Aina, Adekunle, Roman, Andrei Yu., Cashman, Neil R., Peng, Xubiao, Plotkin, Steven S. · 2022 · ACS Chemical Neuroscience
13. Interplay between anion–receptor and anion–solvent interactions in halide receptor complexes characterized with ultrafast infrared spectroscopies
    Jessika Dean, Caroline G. Cramer, Joseph A. Fournier · 2024 · Physical Chemistry Chemical Physics
14. Human consensus interferons: Bridging the natural and artificial cytokines with intrinsic disorder
    Nawal Abd El‐Baky, Vladimir Nikolaevich Uversky, Elrashdy M Moustafa Mohamed Redwan · 2015 · Cytokine & Growth Factor Reviews
15. Evidences of a natively unfolded state for the human topoisomerase IB N-terminal domain
    Oscar Vassallo, Silvia Castelli, Ilda D’Annessa, Blasco Morozzo della Rocca, Lorenzo Stella, Birgitta Ruth Knudsen, Alessandro Desideri · 2010 · Amino Acids
16. On the Encoding of Proteins for Disordered Regions Prediction
    Julien Becker, Francis Maes, Louis A. Wehenkel · 2013 · PLoS ONE
17. Expression, purification, and characterization of a structurally disordered and functional C-terminal autoinhibitory domain (AID) of the 70kDa 40S ribosomal protein S6 kinase-1 (S6K1)
    Timothy J. Ragan, Duncan B. Ross, Malik M. Keshwani, Thomas K. Harris · 2007 · Protein Expression and Purification
18. Predictors of natively unfolded proteins: unanimous consensus score to detect a twilight zone between order and disorder in generic datasets
    Antonio Deiana, Andrea Giansanti · 2010 · BMC Bioinformatics
19. Role of antisense RNAs in evolution of yeast regulatory complexity
    Chih-Hsu Lin, Zing Tsung‐Yeh Tsai, Daryi Wang · 2013 · Genomics
20. Digested disorder
    Vladimir Nikolaevich Uversky · 2013 · Intrinsically Disordered Proteins
21. Ligand interactions and the protein order-disorder energetic continuum
    Mahdi Muhammad Moosa, Josephine C. Ferreon, Allan Chris M. Ferreon · 2018 · Seminars in Cell and Developmental Biology
22. Binding of LcrV protein from Yersinia pestis to human T-cells induces apoptosis, which is completely blocked by specific antibodies
    Vyacheslav M. Abramov, Igor V. Kosarev, Мотин Владимир Леонидович, Valentin S. Khlebnikov, Raisa N. Vasilenko, Vadim K. Sakulin, Мачулин Андрей Валериевич, Vladimir Nikolaevich Uversky, Andrey V. Karlyshev · 2018 · International Journal of Biological Macromolecules
23. What's in the BAGs? Intrinsic disorder angle of the multifunctionality of the members of a family of chaperone regulators
    Liberato Marzullo, Maria Caterina Turco, Vladimir Nikolaevich Uversky · 2021 · Journal of Cellular Biochemistry
24. Purification of Intrinsically Disordered Proteins
    Aviv Paz, Tzviya Zeev‐Ben‐Mordehai, Joel L. Sussman, Israel Silman · 2010
25. Electronegative clusters modulate folding status and RNA binding of unstructured RNA‐binding proteins
    Steve Zaharias, Talia Fargason, Rory A. Greer, Yuhua Song, Jun Zhang · 2023 · Protein Science
26. Disorder in milk proteins: adipophilin and TIP47, important constituents of the milk fat globule membrane
    Elrashdy M Moustafa Mohamed Redwan, Saleh Alkarim, Amr A. El-Hanafy, Yasser M. Saad, Hussein A. Almehdar, Vladimir Nikolaevich Uversky · 2019 · Journal of Biomolecular Structure and Dynamics
27. Temperature-Dependent Molecular Adaptation Features in Proteins
    Sandeep Kumar, Sunil Arya, Ruth Nussinov · 2014 · ASM Press eBooks
28. Evolutionary dynamics of human autoimmune disease genes and malfunctioned immunological genes
    Soumita Podder, Tapash Chandra Ghosh · 2012 · BMC Evolutionary Biology
29. Free Cysteine Modulates the Conformation of Human C/EBP Homologous Protein
    Vinay Kumar Singh, Mona N. Rahman, Kim A. Munro, Vladimir Nikolaevich Uversky, Steven P. Smith, Zongchao Jia · 2012 · PLoS ONE
30. Osmolyte-Induced Folding of an Intrinsically Disordered Activation Function Subdomain of Glucocorticoid Receptor
    Raj Kumar · 2008 · Journal of Receptors and Signal Transduction
31. Comparison of the intrinsic disorder propensities of the RuBisCO activase enzyme from the motile and non-motile oceanic green microalgae
    Lucia Sena, Vladimir Nikolaevich Uversky · 2016 · Intrinsically Disordered Proteins
32. Effects of his-tags on physical properties of parvalbumins
    Вологжанникова Алиса Андреевна, Polina A. Khorn, Alexei S. Kazakov, Eugene A. Permyakov, Vladimir Nikolaevich Uversky, Sergei E. Permyakov · 2018 · Cell Calcium
33. Computational Prediction of Intrinsic Disorder in Protein Sequences with the disCoP Meta-predictor
    Christopher J. Oldfield, Xiao Fan, Chen Wang, A. Keith Dunker, Lukasz Kurgan · 2020 · Methods in molecular biology
34. Modulation of p53 Transactivation Domain Conformations by Ligand Binding and Cancer-Associated Mutations
    Xiaorong Liu, Jianhan Chen · 2019 · Pacific Symposium on Biocomputing (PSB)
35. In Vitro Activity of the EWS Oncogene Transcriptional Activation Domain
    King Pan Ng, Kim K. C. Li, Kevin A. W. Lee · 2009 · Biochemistry
36. Physicochemical properties and homology studies of the floral meristem identity gene LFY in nonflowering and flowering plants
    Roshni Pulukkunadu Thekkeveedu, Smitha Hegde · 2022 · Biotechnologia
37. Exploring Intrinsic Disorder in Human Synucleins and Associated Proteins
    Sriya Reddy Venati, Vladimir Nikolaevich Uversky · 2024 · International Journal of Molecular Sciences
38. Taxonomy-specific assessment of intrinsic disorder predictions at residue and region levels in higher eukaryotes, protists, archaea, bacteria and viruses
    Sushmita Basu, Lukasz Kurgan · 2024 · Computational and Structural Biotechnology Journal
39. Impact of Nonnative Interactions on the Binding Kinetics of Intrinsically Disordered p53 with MDM2: Insights from All-Atom Simulation and Markov State Model Analysis
    Qianjun Xu, Maohua Yang, Jie Ji, Jingwei Weng, Wenning Wang, Xin Xu · 2024 · Journal of Chemical Information and Modeling
40. Unravelling the involvement of protein disorder in cyanobacterial stress responses
    Deepak T. Hurali, Manisha Banerjee, Anand Damodar Ballal · 2024 · International Journal of Biological Macromolecules
41. Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides
    Bin Xue, Daniel Soeria‐Atmadja, Mats G. Gustafsson, Ulf Hammerling, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2011 · Proteins Structure Function and Bioinformatics
42. Trehalose induces functionally active conformation in the intrinsically disordered N-terminal domain of glucocorticoid receptor
    Shagufta H. Khan, Ravi Jasuja, Raj Kumar · 2016 · Journal of Biomolecular Structure and Dynamics
43. Proteasome Interactome and Its Role in the Mechanisms of Brain Plasticity
    О.А. Бунеева, Arthur Tigranovich Kopylov, A. E. Medvedev · 2023 · Biochemistry (Moscow)
44. The Sherpa hypothesis: Phenotype-Preserving Disordered Proteins stabilize the phenotypes of neurons and oligodendrocytes
    Victor Norris, Judit Oláh, Sergey N. Krylov, Vladimir Nikolaevich Uversky, Judit Ovádi · 2023 · npj Systems Biology and Applications
45. Role of structural flexibility in the evolution of emerin
    Yuan Jia, Bin Xue · 2015 · Journal of Theoretical Biology
46. CoagVDb: a comprehensive database for coagulation factors and their associated SAPs
    Shabana Kouser Ali, C. George Priya Doss, D. Thirumal Kumar, Hailong Zhu · 2015 · Biological Research
47. Structural predictions of neurobiologically relevant G-protein coupled receptors and intrinsically disordered proteins
    Giulia Rossetti, Domenica Dibenedetto, Vania Calandrini, Alejandro Giorgetti, Paolo Carloni · 2015 · Archives of Biochemistry and Biophysics
48. Digested disorder
    Shelly DeForte, Krishna D. Reddy, Vladimir Nikolaevich Uversky · 2013 · Intrinsically Disordered Proteins
49. Unfoldomics of prostate cancer: on the abundance and roles of intrinsically disordered proteins in prostate cancer
    Vladimir Uversky, Kevin Scott Landau, Insung Na, Ryan O. Schenck · 2016 · Asian Journal of Andrology
50. Structural facets of POU2F1 in light of the functional annotations and sequence-structure patterns
    Ashmita Dey, Sagnik Sen, Vladimir Nikolaevich Uversky, Ujjwal Maulik · 2020 · Journal of Biomolecular Structure and Dynamics
51. Photocleavable Dimerizer for the Rapid Reversal of Molecular Trap Antagonists
    Shubbir Ahmed, Jun Xie, David A. Horne, John C. Williams · 2014 · Journal of Biological Chemistry
52. Do Viral Proteins Possess Unique Features?
    Bin Xue, Robert W. Williams, Christopher J. Oldfield, Gerard Kian‐Meng Goh, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2011 · Wiley eBooks
53. Protein Intrinsic Disorder and Adaptation to Extreme Environments: Resilience of Chaos
    Vladimir Nikolaevich Uversky · 2025 · Journal of Molecular Biology
54. The Brain‐Gut Axis in Parkinson's Disease Pathology
    Kudret Selin Ozkaya, Kirsteen N. Browning · 2026 · Comprehensive physiology
55. Bioinformatical Approaches to Unstructured/Disordered Proteins and Their Interactions
    Bálint Mészáros, Zsuzsanna Dosztányi, Csaba Magyar, István Simon · 2013 · Springer series in bio-/neuroinformatics
56. The Multi-AT-Hook Chromosomal Protein of Drosophila melanogaster, D1, Is Dispensable for Viability
    Karen S. Weiler, Suman Chatterjee · 2009 · Genetics
57. Multiple solution structures of the disordered peptide indolicidin from IMS-MS analysis
    Neelam Khanal, Maissa M. Gaye, David E. Clemmer · 2017 · International Journal of Mass Spectrometry
58. Integrating an Enhanced Sampling Method and Small-Angle X-Ray Scattering to Study Intrinsically Disordered Proteins
    Chengtao Ding, Sheng Wang, Zhiyong Zhang · 2021 · Frontiers in Molecular Biosciences
59. Liquid condensates: a new barrier to loop extrusion?
    Arseniy V. Selivanovskiy, Maria N. Molodova, Ekaterina E. Khrameeva, Sergey V. Ulianov, Sergey V. Razin · 2025 · Cellular and Molecular Life Sciences
60. Structure and Function of the APP Intracellular Domain in Health and Disease
    Ulrike Müller, Klemens Wil · 2013 · InTech eBooks
61. Intrinsically Disoredered Proteins in Replication Process
    Apolonija Bedina · 2013 · InTech eBooks
62. Structural characterizations of phosphorylatable residues in transmembrane proteins fromArabidopsis thaliana
    Bin Xue, Vladimir Nikolaevich Uversky · 2013 · Intrinsically Disordered Proteins
63. Digested disorder
    Krishna D. Reddy, Shelly DeForte, Vladimir Nikolaevich Uversky · 2014 · Intrinsically Disordered Proteins
64. Hydrophobicity-dependent effects of polymers on different protein conformations
    Amanda Sales Conniff, Leonid Breydo, Tatiana Souza Porto, Ana Lúcia Figueiredo Porto, Vladimir Nikolaevich Uversky · 2016 · RSC Advances
65. Expression, Purification, and Characterization of Interleukin-11 Orthologues
    Andrey S. Sokolov, Alexei S. Kazakov, Valery Solovyev, Ramis G. Ismailov, Vladimir Nikolaevich Uversky, Yulia S. Lapteva, Roman Mikhailov, E. V. Pavlova, Iana Terletskaya, Ludmila V. Ermolina et al. · 2016 · Molecules
66. Mouse S100G protein exhibits properties characteristic of a calcium sensor
    Sergei E. Permyakov, Elena N. Yundina, Alexei S. Kazakov, Maria E. Permyakova, Vladimir Nikolaevich Uversky, Eugene A. Permyakov · 2020 · Cell Calcium
67. Conformational Manifold Sampled by Two Short Linear Motif Segments Probed by Circular Dichroism, Vibrational, and Nuclear Magnetic Resonance Spectroscopy
    Reinhard Schweitzer‐Stenner, Raghed Kurbaj, Nichole S. O’Neill, Brian Andrews, Riya Shah, Brigita Urbanc · 2023 · Biochemistry
68. Structural Disorder and Its Connection with Misfolding Diseases
    Veronika Csizmók, Péter Tompa · 2008 · Focus on structural biology
69. Structural characterization of the intrinsically disordered domain of Mycobacterium tuberculosis protein tyrosine kinase A
    Anna Niesteruk, Marie Hutchison, Sridhar Sreeramulu, Hendrik R. A. Jonker, Christian Paolo Richter, Rupert Abele, Christoph Bock, Harald Schwalbe · 2018 · FEBS Letters
70. On the Regularities of the Polar Profiles of Proteins Related to Ebola Virus Infection and their Functional Domains
    Carlos Polanco, José Lino Samaniego Mendoza, Thomas Buhse, Vladimir Nikolaevich Uversky, Ingrid Paola Bañuelos Chao, Marcela Angola Bañuelos Cedano, Fernando Michel Tavera, Daniel Michel Tavera, Manuel Falconi, Abelardo Vela Ponce de León · 2018 · Cell Biochemistry and Biophysics
71. A disease-causing mutation K240E disrupts ferroportin trafficking by SUMO (ferroportin SUMOylation)
    Henry K. Bayele, Surjit Kaila Srai · 2021 · Biochemistry and Biophysics Reports
72. Molecular Dynamic Simulation of Intrinsically Disordered Proteins and Relevant Forcefields
    Prateek Kumar, Nitin Sharma, Amit Kumar, Rajanish Giri · 2021 · Springer eBooks
73. Effect of Disease Causing Missense Mutations on Intrinsically Disordered Regions in Proteins
    Suryanarayana Seera, Hampapathalu Adimurthy Nagarajaram · 2021 · Protein and Peptide Letters
74. Multidomain Initiation Factor 2 from Thermus thermophilus Consists of the Individual Autonomous Domains
    Gabriel Žoldák, Erik Sedlák, Alexandra Wolfrum, Andrej Musatov, Diana Fedunová, Karol Szkaradkiewicz, Mathias Sprinzl · 2008 · Biochemistry
75. Modelling of the ABL and ARG proteins predicts two functionally critical regions that are natively unfolded
    Pietro Buffa, Livia Manzella, Maria Letizia Consoli, Angelo Messina, Paolo Giovanni Vigneri · 2007 · Proteins Structure Function and Bioinformatics
76. Born This Way: Using Intrinsic Disorder to Map the Connections between SLITRKs, TSHR, and Male Sexual Orientation
    Tara Basavanhally, Renée Fonseca, Vladimir Nikolaevich Uversky · 2018 · PROTEOMICS
77. Biochemical and structural biology aspects of liquid–liquid phase separation: protein side of liquid–liquid phase separation, membrane-less organelles, and biomolecular condensates
    Vladimir Nikolaevich Uversky · 2022 · Elsevier eBooks
78. N-Terminal Proline Editing for the Synthesis of Peptides with Mercaptoproline and Selenoproline: Mechanistic Insights Lead to Greater Efficiency in Proline Native Chemical Ligation
    Brice A. Ludwig, Christina R. Forbes, Neal Joseph Zondlo · 2024 · ACS Chemical Biology
79. Binding of a substrate (“lock and key”) and conformational adaption (“induced fit”) are different stages of enzyme action
    Munishwar Nath Gupta, Timir Tripathi, Vladimir Nikolaevich Uversky · 2024 · Elsevier eBooks
80. Proteomic analysis provides integrated insight into mechanisms of Turnip mosaic virus long distance movement in Brassica rapa
    C. Liu, Guangwen Sun, R.-J. Zhang, Shanwu Lv, Le Gao, Le Gao, T.-K. Liu, D. Xiao, Xingliang Hou, C. W. Zhang · 2018 · Biologia Plantarum
81. A biosensor study of protein interaction with the 20S proteasome core particle
    О.А. Бунеева, Oksana V. Gnedenko, Maria V. Medvedeva, Victor Gavrilovich Zgoda, Alexis S. Ivanov, A. E. Medvedev · 2019 · Biomeditsinskaya Khimiya
82. DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins
    Min Fang, Yufeng He, Zhihua Du, Vladimir Nikolaevich Uversky · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
83. Coupled binding and folding of disordered SPIN N-terminal region in myeloperoxidase inhibition
    Yumeng Zhang, Xiaorong Liu, Jianhan Chen · 2023 · Frontiers in Molecular Biosciences
84. The lac repressor hinge helix in context: The effect of the DNA binding domain and symmetry
    Danielle Seckfort, Gillian C. Lynch, Bernard Montgomery Pettitt · 2020 · Biochimica et Biophysica Acta (BBA) - General Subjects
85. Genomic Analysis of Intrinsically Disordered Proteins in the Genus Camelus
    Manal A. Alshehri, Manee M. Manee, Mohamed B. Al‐Fageeh, Badr M. Al-Shomrani · 2020 · International Journal of Molecular Sciences
86. Molecular Simulations of Intrinsically Disordered Proteins and Their Binding Mechanisms
    Xiakun Chu, Suhani Nagpal, Víctor Muñoz · 2021 · Methods in molecular biology
87. Applications of Bioinformatics and Experimental Methods to Intrinsic Disorder-Based Protein-Protein Interactions
    Xiaolin Sun, T. William, N. Vladimir · 2012 · Protein Engineering
88. Unfoldomes and Unfoldomics: Introducing Intrinsically Disordered Proteins
    Bin Xue, Vladimir Nikolaevich Uversky · 2016 · Springer eBooks
89. Hypothesis
    Vladimir Nikolaevich Uversky · 2013 · Intrinsically Disordered Proteins
90. Denaturant-Induced Conformational Transitions in Intrinsically Disordered Proteins
    Paolo Neyroz, Stefano Ciurli, Vladimir Nikolaevich Uversky · 2012 · Methods in molecular biology
91. Intrinsic Disorder in Nuclear Receptor Amino Termini: From Investigational Challenge to Therapeutic Opportunity
    Rambon Shamilov, Brian J. Aneskievich · 2019 · Nuclear Receptor Research
92. Intrinsically Disordered Chaperones and Neurodegeneration
    Vladimir Nikolaevich Uversky · 2011 · Wiley eBooks
93. New classification of intrinsic disorder in the Human proteome
    Antonio Deiana, Sergio Forcelloni, Alessandro Porrello, Andrea Giansanti · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
94. Hidden Structure in Disordered Proteins is Adaptive to Intracellular Changes
    DAVID C. MOSES, Karina C. Guadalupe, Feng Yu, Eduardo Flores, Anthony Perez, Ralph McAnelley, Nora M. Shamoon, Estefania Cuevas-Zepeda, Andrea D. Merg, Erik W. Martin et al. · 2022 · SSRN Electronic Journal
95. Understanding functional flexibility from intrinsic disorder landscapes of fourteen bat species proteomes
    Naveen Kumar, Rahul Kaushik, Guy W. Dayhoff, Vladimir Nikolaevich Uversky, Ashutosh Singh, Sandeep Bhatia, Aniket Sanyal · 2025 · International Journal of Biological Macromolecules
96. Likely Overstabilization of Charge–Charge Interactions in CHARMM36m(w): A Case for a99SB-disp Water
    Xiping Gong, Yumeng Zhang, Jianhan Chen · 2024 · The Journal of Physical Chemistry B
97. Accurate and Fast Prediction of Intrinsic Disorder Using flDPnn
    Kui Wang, Gang Hu, Zhonghua Wu, Lukasz Kurgan · 2024 · Methods in molecular biology
98. Thermodynamic perspective of protein disorder and phase separation: model systems
    Riley J. Workman, Justin A. Drake, Bernard Montgomery Pettitt · 2022 · Elsevier eBooks
99. Overview Update: Computational Prediction of Intrinsic Disorder in Proteins
    Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2023 · Current Protocols
100. Molecular mechanisms behind the generation of pro-oncogenic HIV-1 matrix protein p17 variants
     Alberto Zani, Serena Messali, Antonella Bugatti, Matteo Uggeri, Alessandro Rondina, Leonardo Sclavi, Francesca Caccuri, Arnaldo Caruso · 2024 · Journal of General Virology