Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

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Items 701–800 of 847

1. Reducing Overfitting in Predicting Intrinsically Unstructured Proteins
   Pengfei Han, Xiuzhen Zhang, Raymond S. Norton, Zhiping Feng · 2007 · Springer eBooks
2. Improved protein disorder predictor by smoothing output
   Sumaiya Iqbal, Md Nasrul Islam, Md Tamjidul Hoque · 2014 · International Conference on Computer and Information Technology (ICCIT)
3. Atomistic Insights Into the Regulatory Mechanisms Mediated by Post- Translational Modifications: Molecular Dynamics Investigations
   Elena Papaleo, Nicola Andrea Casiraghi, Alberto Arrigoni, Valeria Ranzani · 2012 · Current Physical Chemistry
4. Exploring disorder in the human charged biased proteins
   Mouna Choura, Ahmed Rebaï · 2017 · Journal of Receptors and Signal Transduction
5. Price of disorder in the lac repressor hinge helix
   Danielle Seckfort, Bernard Montgomery Pettitt · 2018 · Biopolymers
6. Flexible spandrels of the global plant virome: Proteomic-wide evolutionary patterns of structural intrinsic protein disorder elucidate modulation at the functional virus–host interplay
   Rachid Tahzima, Annelies Haegeman, Sébastien Massart, Eugénie Hébrard · 2021 · Progress in molecular biology and translational science
7. Ubiquitin-Independent Degradation of Proteins in Proteasomes
   О.А. Бунеева, A. E. Medvedev · 2018 · Biochemistry (Moscow) Supplement Series B Biomedical Chemistry
8. Disordered Proteins
   A. Keith Dunker · 2007 · Encyclopedia of Life Sciences
9. Combining All-Atom Molecular Dynamics Simulation and NMR to Analyze Conformational Ensemble of Intrinsically Disordered Proteins
   Xingyu Song, Wenning Wang · 2025 · Communications in Computational Chemistry
10. A blurry view of fuzzy objects: on the roles of low-resolution structural techniques in discovery and early characterization of intrinsically disordered proteins
    Vladimir Nikolaevich Uversky · 2025 · Frontiers in Biophysics
11. The multifaceted character of water as solvent for proteins: From poor for folded proteins to good for (some) intrinsically disordered proteins and protein segments
    Reinhard Schweitzer‐Stenner · 2026 · Quarterly Reviews of Biophysics
12. Allosteric Regulation and Intrinsic Disorder in Nuclear Hormone Receptors
    Jordan T. White, Hesam N. Motlagh, Jing Li, E. Brad Thompson, Vincent J. Hilser · 2015 · Springer eBooks
13. Electronic Polarization at the Interface between the p53 Transactivation Domain and Two Binding Partners
    Alexsandra Corrigan, Justin A. Lemkul · 2022 · The Journal of Physical Chemistry B
14. High-throughput assay exploiting disorder-to-order conformational switches: application to the proteasomal Rpn10:E6AP complex
    Christine S. Muli, Sergey G. Tarasov, Kylie J. Walters · 2024 · Chemical Science
15. Papillomavirus binding factor (PBF) is an intrinsically disordered protein with potential participation in osteosarcoma genesis, in silico evidence
    Paola Castillo-Juárez, Abraham Cetina-Corona, Alfonso Méndez-Tenorio, Lennane Michel Espinoza-Fonseca, Blanca Lilia Barrón · 2014 · Theoretical Biology and Medical Modelling
16. Template-Based Protein Structure Prediction
    Junfeng Huang, Peng Wei Duan, Wenyan Wu · 2011 · Acta Biophysica Sinica
17. Predicting Disordered Regions in Proteins Based on Decision Trees of Reduced Amino Acid Composition
    Pengfei Han, Xiuzhen Zhang, Raymond S. Norton, Zhiping Feng · 2006 · Journal of Computational Biology
18. Single‐Molecule Spectroscopy of Unfolded Proteins
    Benjamin Schuler · 2010
19. Amino acid composition and thermal stability of protein structures: the free energy geography of the Protein Data Bank
    Antonio Deiana, Kana Shimizu, Andrea Giansanti · 2010 · arXiv (Cornell University)
20. Intrinsically Disordered Proteins: An Update
    A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro R Romero, Jack Y. Yang, Zoran Obradovic A, Vladimir Nikolaevich Uversky · 2007 · IEEE International Conference on Bioinformatics and Bioengineering (BIBE)
21. Loop anchor modification causes the population of an alternative native state in an SH3‐like domain
    Jane A. Knappenberger, Juliette T. J. Lecomte · 2007 · Protein Science
22. Designability and Disease
    Philip Wong, Dmitrij Frishman · 2008 · Methods in molecular biology
23. Number of natively unfolded proteins scales with genome size
    Antonio Deiana, Andrea Giansanti · 2008
24. Structural Heterogeneity of Intermediate States Facilitates CRIPT Peptide Binding to the PDZ3 Domain: Insights from Molecular Dynamics and Markov State Model Analysis.
    Xingyu Song, Dong-Dong Wang, Jie Ji, Jing-Wei Weng, Wen-Ning Wang · 2025 · Journal of Chemical Theory and Computation
25. The complexity and fuzziness of biomolecular conformations and their cellular roles
    Pier Luigi Gentili, Vladimir Nikolaevich Uversky · 2026 · Elsevier eBooks
26. Nearest neighbour interactions between amino acid residues in short peptides and coil libraries
    Reinhard Schweitzer‐Stenner · 2026 · RSC Advances
27. Extending the classical sequence–structure–function paradigm through protein dynamics and context‐dependent behavior
    Timir Tripathi, Vladimir Nikolaevich Uversky, Alessandro Giuliani · 2026 · FEBS Letters
28. A New Anatomy of Autophagic Clearance: On the Roles of Intrinsic Disorder in the Membrane-Less on Membrane-Encapsulated Mechanism
    Vladimir Nikolaevich Uversky, Hana Popelka, Daniel J. Klionsky · 2026 · Membranes
29. The allostery principle supports the symbolic character of signaling circuits: gene regulation provides a form of intelligence to living systems
    Julio Collado‐Vides · 2026 · Theory in Biosciences
30. Characterization of the RstB2 protein, the DNA-binding protein of CTXϕ phage from Vibrio cholerae
    Alina Falero, Karen Marrero, Sònia Trigueros, Rafael Fando · 2014 · Virus Genes
31. Characterization of the single-stranded DNA binding protein pVVGJΦ of VGJΦ phage from Vibrio cholerae
    Alina Falero, Andy Caballero, Sònia Trigueros, Celso Pérez, Javier Campos, Karen Marrero, Rafael Fando · 2011 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
32. Bioinformatics Approaches to the Structure and Function of Intrinsically Disordered Proteins
    Péter Tompa · 2008 · Springer eBooks
33. Aggregation propensities of proteins with varying degrees of disorder
    Priya Dey, Parbati Biswas · 2022 · Journal of Computational Chemistry
34. Energy landscape quantifications of histone H3.3 recognition by chaperone DAXX reveal an uncoupled binding specificity and affinity
    Fei Liu, Jin Wang, Rui-Ming Xu, Na Yang · 2023 · Physical Chemistry Chemical Physics
35. Marc H. V. van Regenmortel, a virtual friend and a real colleague
    Vladimir Nikolaevich Uversky · 2024 · Journal of Molecular Recognition
36. Co-expression and co-localization of hub proteins and their partners are encoded in protein sequence
    Ariel Feiglin, Shaul Ashkenazi, Avner Schlessinger, Burkhard Rost, Yanay Ofran · 2014 · Molecular BioSystems
37. On the potential of using peculiarities of the protein intrinsic disorder distribution in mitochondrial cytochromebto identify the source of animal meats
    haitham ahmed yacoub, Mahmoud Abdel Sadek, Vladimir Nikolaevich Uversky · 2017 · Intrinsically Disordered Proteins
38. Constructing Reliable Protein-Protein Interaction (PPI) Networks
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
39. Efficacy of independence sampling in replica exchange simulations of ordered and disordered proteins
    Kuo Hao Lee, Jianhan Chen · 2017 · Journal of Computational Chemistry
40. Making Order in the Intrinsically Disordered Regions of HIV‐1 Vif Protein
    Tali Haviv Reingewertz, Deborah E. Shalev, Assaf Friedler · 2011
41. On the performance of combined dichotomic predictors of natively unfolded proteins
    Antonio Deiana, Andrea Giansanti · 2008 · arXiv (Cornell University)
42. BIOINFORMATICS ORIGINAL PAPER
    Cole Trapnell, Lior S. Pachter, Steven L. Salzberg · 2009
43. Natively unfolded proteins: scalar predictors
    Antonio Deiana, Andrea Giansanti · 2008 · arXiv (Cornell University)
44. AlphaFold Models Illuminate Half of Dark Human Proteins
    Jessica Binder, Joel Berendzen, Amy O. Stevens, Yi Jie He, Jian Wang, Nikolay V. Dokholyan, Tudor Ionel Oprea · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
45. Order from Disorder: Structure, Function, and Dynamics of the HIV‐1 Transactivator of Transcription
    Shaheen Shojania, Joe D. O’Neil · 2011 · Wiley eBooks
46. Structural Disorder in Matrix Proteins of HIV‐Related Viruses
    Gerard Kian‐Meng Goh, Bin Xue, A. Keith Dunker, Vladimir Nikolaevich Uversky · 2011 · Wiley eBooks
47. GCN5-B is a Novel Nuclear Histone Acetyltransferase that is Crucial for Viability in the Protozoan Parasite Toxoplasma gondii
    Stacey E. Dixon · 2011 · IUScholarWorks (Indiana University)
48. Fundamentals of Protein Folding
    Vladimir Nikolaevich Uversky · 2014 · Wiley eBooks
49. Large‐Scale Identification of Intrinsically Disordered Proteins
    Vladimir Nikolaevich Uversky, Marc S. Cortese, Péter Tompa, Veronika Csizmók, A. Keith Dunker · 2010
50. Protein Unfolding Equilibria
    2013
51. From Protein Sequence to Structural Instability and Disease
    Lixiao Wang · 2010 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
52. Variation in length of proteins by repeats and disorder regions
    Rauan Sagit · 2013 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
53. Analysis of molecular recognition features in membrane proteins
    Ioly Kotta‐Loizou, GN Tsaousis, Stavros J. Hamodrakas · 2012 · EMBnet journal
54. Prediction of protein phosphorylation sites by support vector machines
    Tomoki Ishino, Ikuko Nishikawa, Yukako Tohsato, Satoshi Fukuchi, Ken Nishikawa · 2013 · International Conference on Biomedical Engineering and Informatics (BMEI)
55. Conformational Behavior of Intrinsically Disordered Proteins: Effects of Strong Denaturants, Temperature, PH, Counterions, and Macromolecular Crowding
    Vladimir Nikolaevich Uversky · 2010 · Wiley eBooks
56. Hidden Dimensions in Protein Evolution: Stability, Mutational Robustness, and Evolvability
    Jesse D. Bloom · 2007
57. SYNAPTOTAGMIN SIGNAL PROPAGATION: A MODEL SYSTEM FOR FUNCTIONAL COOPERATIVITY AT THE MEMBRANE
    Michael E. Fealey · 2013
58. Combining predictors of natively unfolded proteins to detect a twilight zone between order and disorder in generic datasets
    Antonio Deiana, Andrea Giansanti · 2009 · arXiv (Cornell University)
59. Molecular recognition of intrinsically disordered proteins: theory, predictions and applications
    Zsuzsanna Dosztányi, István Simon · 2012
60. Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic
    Interactomes Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac A, Vladimir Nikolaevich Uversky, Marc Vidal, Lilia M. Iakoucheva · 2006
61. The CP12 protein family: a thioredoxin-mediated metabolic
    Christine A. Raines, José Angel Traverso, Investigaciones Científicas Y, Renate Scheibe, Mariam Sahrawy, Paolo Trost, A Raines · 2014
62. Understanding the functional significance of intrinsically disordered regions in proteins using computational methods
    Gajinder Pal Singh · 2009 · INFLIBNET
63. Charakterisierung und experimentelle Therapien eines neuen Mausmodells für das Rett Syndrom
    Jan Eike Wegener · 2015
64. Intrinsically disordered proteins in molecular recognition and structural proteomics
    Christopher J. Oldfield · 2014 · IUScholarWorks (Indiana University)
65. Nanomechanics of Proteins, Both Folded and Disordered
    Rubén Hervás, Albert Galera‐Prat, Àngel Gómez‐Sicilia, Fernando Losada-Urzáiz, María del Carmen Fernández‐Ramírez, Débora Fernández-Bravo, Elena Santana, Clara Barrio-García, Carolina Melero, Mariano Carrión‐Vázquez · 2012 · Springer eBooks
66. The umuD gene products are molecular adaptors in the regulation of DNA damage tolerance
    Jaylene N. Ollivierre · 2012
67. - Molecular Thermodynamic Modeling of Fluctuation Solution Theory Properties
    Paul E. Smith, Enrico Matteoli, John P. O' Connell · 2013 · CRC Press eBooks
68. The role of ligand induced stabilization in the allosteric mechanism of tetracycline repressor.
    Sean E. Reichheld · 2008 · TSpace (University of Toronto)
69. NMR Studies of SH3 Domain Structure and Function
    Irina Bezsonova · 2009 · TSpace (University of Toronto)
70. Electronegativity and intrinsic disorder of preeclampsia-related proteins
    Carlos Polanco, Jorge Alberto Castañón-González, Vladimir Nikolaevich Uversky, Thomas Buhse, José Lino Samaniego Mendoza, Juan José Calva · 2016 · Acta Biochimica Polonica
71. Review Myelin basic protein: a multifunctional protein
    Joan M. Boggs · 2006
72. Regulation of Palmitoylation Enzymes and Substrates by Intrinsically Disordered Regions
    Krishna D. Reddy · 2016 · Digital Commons - University of South Florida (University of South Florida)
73. Structural Predictions of Intrinsically Disordered Proteins with Computational Methods
    Etna Abad, Giulia Rossetti · 2016
74. Identifying Evolutionarily Conserved Protein Complexes
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
75. Protein Complex Prediction in the Era of Systems Biology
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
76. Introduction to Protein Complex Prediction
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
77. Evaluating Protein Complex Prediction Methods
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
78. Computational Methods for Protein Complex Prediction from PPI Networks
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
79. Open Challenges in Protein Complex Prediction
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
80. Identifying Dynamic Protein Complexes
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
81. Molecular Modelling and Simulations Applied to Challenging Drug Discovery Targets
    Marco De Vivo, Matteo Masetti, Giulia Rossetti · 2017 · Royal Society of Chemistry eBooks
82. Aggregation of α-synuclein monomers and engineered oligomers in solution
    Li, Xi · 2015 · ERA: Education and Research Archive (University of Alberta)
83. Large-scale Characterization Of Intrinsic Disorder And High-throughput Prediction Of RNA, DNA and Protein Binding Mediated By Intrinsic Disorder
    Zhenling Peng · 2014 · ERA: Education and Research Archive (University of Alberta)
84. Bioinformatical Approaches to Unstructured/Disordered Proteins and Their Complexes
    Bálint Mészáros, Zsuzsanna Dosztányi, Erzsébet Fichó, Csaba Magyar, István Simon · 2018 · Springer series on bio- and neurosystems
85. Disorder Levels of c-Myb Transactivation Domain Regulate its Binding Affinity to the KIX Domain of CREB Binding Protein
    Anusha Poosapati · 2017 · Digital Commons - University of South Florida (University of South Florida)
86. Using Paramagnetic Probes to Study Structural Transitions in Proteins
    Valérie Belle, André Fournel · 2020 · Springer eBooks
87. Molecular Basis of Complex Heritability in Natural Genotype-to-Phenotype Relationships
    Christopher M. Jakobson, Daniel F. Jarosz · 2019 · SSRN Electronic Journal
88. Chromatin structuring factor HMGA2 controls subtelomere stability and cancer chemosensitivity
    Syed Moiz Ahmed · 2020
89. Faculty Opinions recommendation of Prediction of leucine-rich nuclear export signal containing proteins with NESsential.
    Yuh Min Chook, Darui Xu · 2012 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
90. References
    2009 · Chapman & Hall/CRC eBooks
91. Predicting protein intrinsically disordered regions by applying natural language processing practices
    Rajkumar Chakraborty, Yasha Hasija · 2022 · Soft Computing
92. Conclusion
    Sriganesh Srihari, Chern Han Yong, Limsoon Wong · 2017
93. Peer Review #2 of "Malleable ribonucleoprotein machine: protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome (v0.1)"
    2013 · PeerJ
94. The Rational Design of Biological Complexity: A Deceptive Metaphor
    Marc H.V. Van Regenmortel · 2019 · Springer eBooks
95. What Is a B Cell Epitope
    Marc H.V. Van Regenmortel · 2019 · Springer eBooks
96. Peer Review #1 of "Intrinsically disordered caldesmon binds calmodulin via the “buttons on a string” mechanism (v0.2)"
    2015 · PeerJ
97. Peer Review #1 of "Intrinsically disordered caldesmon binds calmodulin via the “buttons on a string” mechanism (v0.1)"
    2015 · PeerJ
98. Structural Disorder in Proteins of the Rhabdoviridae Replication Complex
    Cédric Leyrat, Francine C. A. Gérard, Euripedes A. Ribeiro, Ivan Ivanov, Marc Jamin · 2011
99. Disordered Proteins
    Shelly DeForte, Vladimir Nikolaevich Uversky · 2016 · Wiley eBooks
100. Limitations to the Structure-Based Design of HIV-1 Vaccine Immunogens
     Marc H.V. Van Regenmortel · 2019 · Springer eBooks