Analytical and statistical approaches to metabolomics research
Abstract
Metabolomics, the global profiling of metabolites in different living systems, has experienced a rekindling of interest partially due to the improved detection capabilities of the instrumental techniques currently being used in this area of biomedical research. The analytical methods of choice for the analysis of metabolites in search of disease biomarkers in biological specimens, and for the study of various low molecular weight metabolic pathways include NMR spectroscopy, GC/MS, CE/MS, and HPLC/MS. Global metabolite analysis and profiling of two different sets of data results in a plethora of data that is difficult to manage or interpret manually because of their subtle differences. Multivariate statistical methods and pattern-recognition programs were developed to handle the acquired data and to search for the discriminating features between data acquired from two sample sets, healthy and diseased. Metabolomics have been used in toxicology, plant physiology, and biomedical research. In this paper, we discuss various aspects of metabolomic research including sample collection, handling, storage, requirements for sample analysis, peak alignment, data interpretation using statistical approaches, metabolite identification, and finally recommendations for successful analysis.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
NMR is robust, nondestructive, and quantitative but has relatively low sensitivity, limiting its coverage of the food metabolome to predominant nutrients, sugars, and microbial metabolites at millimolar to micromolar concentrations.
“Briefly, NMR is robust, nondestructive, and quantitative but has a relatively low sensitivity, which narrows its coverage of the food metabolome to predominant nutrients, sugars, and microbial metabolites present at millimolar to micromolar concentrations.”
From The food metabolome: a window over dietary exposure (2014) · cites this paper as [113]
Cites
A Tutorial on Support Vector Machines for Pattern Recognition
Burges, C. J. C. (1998) · Data Mining and Knowledge Discovery · doi:10.1023/a:1009715923555 · Cited by 16,437 · see citing works
Spin Diffusion Measurements: Spin Echoes in the Presence of a Time-Dependent Field Gradient
Stejskal, E. O., & Tanner, J. E. (1965) · The Journal of Chemical Physics · doi:10.1063/1.1695690 · Cited by 8,239 · see citing works
Modified Spin-Echo Method for Measuring Nuclear Relaxation Times
Meiboom, S., & Gill, D. (1958) · Review of Scientific Instruments · doi:10.1063/1.1716296 · Cited by 6,001 · see citing works
Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C. A., Fan, T. W.-M., Fiehn, O., Goodacre, R., Griffin, J. L., et al. (2007) · Metabolomics · doi:10.1007/s11306-007-0082-2 · Cited by 5,368 · see citing works
Smith, C. A., Want, E. J., O’Maille, G., Abagyan, R. A., & Siuzdak, G. E. (2006) · Analytical Chemistry · doi:10.1021/ac051437y · Cited by 5,296 · see citing works
Nicholson, J. K., Lindon, J. C., & Holmes, E. C. (1999) · Xenobiotica · doi:10.1080/004982599238047 · Cited by 3,903 · see citing works
A systematic nomenclature for carbohydrate fragmentations in FAB-MS/MS spectra of glycoconjugates
Domon, B., & Costello, C. E. (1988) · Glycoconjugate Journal · doi:10.1007/bf01049915 · Cited by 2,762 · see citing works
van den Berg, R. A., Hoefsloot, H. C., Westerhuis, J. A., Smilde, A. K., & van der Werf, M. J. (2006) · BMC Genomics · doi:10.1186/1471-2164-7-142 · Cited by 2,450 · see citing works
Mass spectrometry‐based metabolomics
Dettmer, K., Aronov, P. A., & Hammock, B. D. (2006) · Mass Spectrometry Reviews · doi:10.1002/mas.20108 · Cited by 2,261 · see citing works
Metabolite profiling for plant functional genomics
Fiehn, O., Kopka, J., Dörmann, P., Altmann, T., Trethewey, R. N., & Willmitzer, L. (2000) · Nature Biotechnology · doi:10.1038/81137 · Cited by 2,129 · see citing works
Beckonert, O. P., Keun, H. C., Ebbels, T. M. D., Bundy, J. G., Holmes, E. C., Lindon, J. C., & Nicholson, J. K. (2007) · Nature Protocols · doi:10.1038/nprot.2007.376 · Cited by 2,112 · see citing works
Dieterle, F., Ross, A., Schlotterbeck, G., & Senn, H. (2006) · Analytical Chemistry · doi:10.1021/ac051632c · Cited by 1,772 · see citing works
Trygg, J., Holmes, E. C., & Lundstedt, T. (2006) · Journal of Proteome Research · doi:10.1021/pr060594q · Cited by 1,276 · see citing works
Metabolomics by numbers: acquiring and understanding global metabolite data
Goodacre, R., Vaidyanathan, S., Dunn, W. B., Harrigan, G. G., & Kell, D. B. (2004) · Trends in biotechnology · doi:10.1016/j.tibtech.2004.03.007 · Cited by 1,262 · see citing works
Metabolomics: Current analytical platforms and methodologies
Dunn, W. B., & Ellis, D. I. (2005) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2004.11.021 · Cited by 1,204 · see citing works
750 MHz 1H and 1H-13C NMR Spectroscopy of Human Blood Plasma
Nicholson, J. K., Foxall, P. J. D., Spraul, M., Farrant, R. D., & Lindon, J. C. (1995) · Analytical Chemistry · doi:10.1021/ac00101a004 · Cited by 1,020 · see citing works
Cloarec, O., Dumas, M., Craig, A., Barton, R. H., Trygg, J., Hudson, J., Blancher, C., Gauguier, D., Lindon, J. C., Holmes, E. C., et al. (2005) · Analytical Chemistry · doi:10.1021/ac048630x · Cited by 912 · see citing works
Targeted Profiling: Quantitative Analysis of 1 H NMR Metabolomics Data
Weljie, A. M., Newton, J., Mercier, P., Carlson, E., & Slupsky, C. M. (2006) · Analytical Chemistry · doi:10.1021/ac060209g · Cited by 902 · see citing works
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
Katajamaa, M., Miettinen, J., & Orešič, M. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btk039 · Cited by 836 · see citing works
Comprehensive Two-Dimensional Gas Chromatography using an On-Column Thermal Modulator Interface
Liu, Z., & Phillips, J. B. (1991) · Journal of Chromatographic Science · doi:10.1093/chromsci/29.6.227 · Cited by 806 · see citing works
Tuck, M. K., Chan, D. W., Chia, D., Godwin, A. K., Grizzle, W. E., Krueger, K. E., Rom, W. N., Sanda, M. G., Sorbara, L. R., Stass, S. A., et al. (2008) · Journal of Proteome Research · doi:10.1021/pr800545q · Cited by 742 · see citing works
Soga, T., Baran, R., Suematsu, M., Ueno, Y., Ikeda, S., Sakurakawa, T., Kakazu, Y., Ishikawa, T., Robert, M., Nishioka, T., et al. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m601876200 · Cited by 740 · see citing works
Metabolomics: A Global Biochemical Approach to Drug Response and Disease
Kaddurah-Daouk, R. F., Kristal, B. S., & Weinshilboum, R. M. (2008) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.48.113006.094715 · Cited by 669 · see citing works
High resolution proton magnetic resonance spectroscopy of biological fluids
Nicholson, J. K., & Wilson, I. D. (1989) · Progress in Nuclear Magnetic Resonance Spectroscopy · doi:10.1016/0079-6565(89)80008-1 · Cited by 630 · see citing works
Mass spectrometry in metabolome analysis
Villas-Bôas, S. G., Mas, S., Åkesson, M., Smedsgaard, J., & Nielsen, J. (2004) · Mass Spectrometry Reviews · doi:10.1002/mas.20032 · Cited by 618 · see citing works
Quantitative metabolomics using NMR
Wishart, D. S. (2008) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2007.12.001 · Cited by 595 · see citing works
Ultrahigh-Pressure Reversed-Phase Liquid Chromatography in Packed Capillary Columns
MacNair, J. E., Lewis, K. C., & Jorgenson, J. W. (1997) · Analytical Chemistry · doi:10.1021/ac961094r · Cited by 584 · see citing works
Want, E. J., O’Maille, G., Smith, C. A., Brandon, T. R., Uritboonthai, W., Qin, C., Trauger, S. A., & Siuzdak, G. E. (2005) · Analytical Chemistry · doi:10.1021/ac051312t · Cited by 566 · see citing works
The Metabolomics Standards Initiative (MSI)
Fiehn, O., Robertson, D., Griffin, J., van der Werf, M., Nikolau, B., Morrison, N., Sumner, L. W., Goodacre, R., Hardy, N. W., Taylor, C., et al. (2007) · Metabolomics · doi:10.1007/s11306-007-0070-6 · Cited by 518 · see citing works
Gika, H., Theodoridis, G. A., Wingate, J. E., & Wilson, I. D. (2007) · Journal of Proteome Research · doi:10.1021/pr070183p · Cited by 502 · see citing works
NMR‐based metabonomic approaches for evaluating physiological influences on biofluid composition
Bollard, M. E., Stanley, E. G., Lindon, J. C., Nicholson, J. K., & Holmes, E. C. (2004) · NMR in Biomedicine · doi:10.1002/nbm.935 · Cited by 473 · see citing works
A comprehensive urinary metabolomic approach for identifying kidney cancer
Kind, T., Tolstikov, V., Fiehn, O., & Weiss, R. H. (2007) · Analytical Biochemistry · doi:10.1016/j.ab.2007.01.028 · Cited by 449 · see citing works
Proposed minimum reporting standards for data analysis in metabolomics
Goodacre, R., Broadhurst, D., Smilde, A. K., Kristal, B. S., Baker, J. D., Beger, R. D., Bessant, C., Connor, S. C., Capuani, G., Craig, A., et al. (2007) · Metabolomics · doi:10.1007/s11306-007-0081-3 · Cited by 441 · see citing works
Pattern recognition methods and applications in biomedical magnetic resonance
Lindon, J. C., Holmes, E. C., & Nicholson, J. K. (2001) · Progress in Nuclear Magnetic Resonance Spectroscopy · doi:10.1016/s0079-6565(00)00036-4 · Cited by 425 · see citing works
Processing methods for differential analysis of LC/MS profile data
Katajamaa, M., & Orešič, M. (2005) · BMC Bioinformatics · doi:10.1186/1471-2105-6-179 · Cited by 400 · see citing works
Slupsky, C. M., Rankin, K. N., Wagner, J., Fu, H., Chang, D., Weljie, A. M., Saude, E. J., Lix, B., Adamko, D. J., Shah, S. L., et al. (2007) · Analytical Chemistry · doi:10.1021/ac0708588 · Cited by 398 · see citing works
200 and More NMR Experiments: A Practical Course
Berger, S. T. A., & Braun, S. (2004) · Cited by 378 · see citing works
Analysis of Metabolomic Data Using Support Vector Machines
Mahadevan, S., Shah, S. L., Marrie, T. J., & Slupsky, C. M. (2008) · Analytical Chemistry · doi:10.1021/ac800954c · Cited by 370 · see citing works
Dumas, M., Maibaum, E., Teague, C. R., Ueshima, H., Zhou, B., Lindon, J. C., Nicholson, J. K., Stamler, J., Elliott, P., Chan, Q. M., et al. (2006) · Analytical Chemistry · doi:10.1021/ac0517085 · Cited by 347 · see citing works
Crockford, D. J., Holmes, E. C., Lindon, J. C., Plumb, R. S., Zirah, S., Bruce, S. J., Rainville, P. D., Stumpf, C. L., & Nicholson, J. K. (2005) · Analytical Chemistry · doi:10.1021/ac051444m · Cited by 341 · see citing works
Metabolomics: building on a century of biochemistry to guide human health
German, J. B., Hammock, B. D., & Watkins, S. M. (2005) · Metabolomics · doi:10.1007/s11306-005-1102-8 · Cited by 336 · see citing works
Detection of epithelial ovarian cancer using 1 H‐NMR‐based metabonomics
Odunsi, K. O., Wollman, R. M., Ambrosone, C. B., Hutson, A. D., McCann, S. E., Tammela, J., Geisler, J. P., Miller, G., Sellers, T. A., Cliby, W. A., et al. (2004) · International Journal of Cancer · doi:10.1002/ijc.20651 · Cited by 319 · see citing works
Metabolome analysis by capillary electrophoresis–mass spectrometry
Monton, M. R. N., & Soga, T. (2007) · Journal of Chromatography A · doi:10.1016/j.chroma.2007.02.065 · Cited by 319 · see citing works
Issaq, H. J., Xiao, Z., & Veenstra, T. D. (2007) · Chemical Reviews · doi:10.1021/cr068287r · Cited by 312 · see citing works
Analytical strategies for identifying drug metabolites
Prakash, C., Shaffer, C. L., & Nedderman, A. (2007) · Mass Spectrometry Reviews · doi:10.1002/mas.20128 · Cited by 304 · see citing works
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data
Zhang, X., Lu, X. L., Shi, Q., Xu, X., Leung, H. E., Harris, L. N., Iglehart, J. D., Miron, A., Liu, J. S., & Wong, W. H. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-197 · Cited by 296 · see citing works
Metabolomics: A Global Biochemical Approach to the Study of Central Nervous System Diseases
Kaddurah-Daouk, R. F., & Krishnan, K. (2008) · Neuropsychopharmacology · doi:10.1038/npp.2008.174 · Cited by 289 · see citing works
An investigation of glasses for capillary chromatography
Dandeneau, R. D., & Zerenner, E. H. (1979) · Journal of High Resolution Chromatography · doi:10.1002/jhrc.1240020617 · Cited by 289 · see citing works
Tandem mass spectrometry in the study of fatty acids, bile acids, and steroids
Griffiths, W. J. (2003) · Mass Spectrometry Reviews · doi:10.1002/mas.10046 · Cited by 288 · see citing works
Lewis, G. D., Wei, R., Liu, E. H., Yang, E., Shi, X., Martinovic, M. F., Farrell, L. A., Asnani, A. H., Cyrille, M., Ramanathan, A., et al. (2008) · Journal of Clinical Investigation · doi:10.1172/jci35111 · Cited by 283 · see citing works
Ramautar, R., Somsen, G. W., & de Jong, G. J. (2008) · Electrophoresis · doi:10.1002/elps.200800512 · Cited by 282 · see citing works
INTERMAP: background, aims, design, methods, and descriptive statistics (nondietary)
Stamler, J., Elliott, P., Dennis, B., Dyer, A., Kesteloot, H., Liu, K., Ueshima, H., & Zhou, B. (2003) · Journal of Human Hypertension · doi:10.1038/sj.jhh.1001603 · Cited by 279 · see citing works
Lewis, I. A., Schommer, S. C., Hodis, B., Robb, K., Tonelli, M., Westler, W. M., Sussman, M. R., & Markley, J. L. (2007) · Analytical Chemistry · doi:10.1021/ac071583z · Cited by 278 · see citing works
Biological sample collection and processing for molecular epidemiological studies
Holland, N., Smith, M. T., Eskenazi, B., & Bastaki, M. (2003) · Mutation Research/Reviews in Mutation Research · doi:10.1016/s1383-5742(02)00090-x · Cited by 275 · see citing works
The Consortium for Metabonomic Toxicology (COMET): Aims, Activities and Achievements
Lindon, J. C., Keun, H. C., Ebbels, T. M. D., Pearce, J. M., Holmes, E. C., & Nicholson, J. K. (2005) · Pharmacogenomics · doi:10.2217/14622416.6.7.691 · Cited by 275 · see citing works
Bellew, M., Coram, M., Fitzgibbon, M., Igra, M., Randolph, T. R., Wang, P., May, D., Eng, J. K., Fang, R., Lin, C., et al. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl276 · Cited by 265 · see citing works
Xu, X., Roman, J. M., Issaq, H. J., Keefer, L. K., Veenstra, T. D., & Ziegler, R. G. (2007) · Analytical Chemistry · doi:10.1021/ac070494j · Cited by 260 · see citing works
The Expanding Role of Mass Spectrometry in Metabolite Profiling and Characterization
Want, E. J., Cravatt, B. F., & Siuzdak, G. E. (2005) · ChemBioChem · doi:10.1002/cbic.200500151 · Cited by 250 · see citing works
Metabolic Profiles: Gas-Phase Methods for Analysis of Metabolites
Horning, E. C., & Horning, M. G. (1971) · Clinical Chemistry · doi:10.1093/clinchem/17.8.802 · Cited by 228 · see citing works
Xu, X., Veenstra, T. D., Fox, S. D., Roman, J. M., Issaq, H. J., Falk, R., Saavedra, J. E., Keefer, L. K., & Ziegler, R. G. (2005) · Analytical Chemistry · doi:10.1021/ac050697c · Cited by 227 · see citing works
Rajalahti, T., Arneberg, R., Kroksveen, A. C., Berle, M., Myhr, K., & Kvalheim, O. M. (2009) · Analytical Chemistry · doi:10.1021/ac802514y · Cited by 226 · see citing works
Metabolic Profiling as a Tool for Understanding Mechanisms of Toxicity
Clarke, C. J., & Haselden, J. N. (2008) · Toxicologic Pathology · doi:10.1177/0192623307310947 · Cited by 217 · see citing works
Peer Reviewed: So What’s the Deal with Metabonomics?
Lindon, J. C., Holmes, E. C., & Nicholson, J. K. (2003) · Analytical Chemistry · doi:10.1021/ac031386+ · Cited by 217 · see citing works
Plumb, R. S., Stumpf, C. L., Gorenstein, M. V., Castro‐Perez, J. M., Dear, G. J., Anthony, M. L., Sweatman, B. C., Connor, S. C., & Haselden, J. N. (2002) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.813 · Cited by 216 · see citing works
Focused lipidomics by tandem mass spectrometry
Taguchi, R., Houjou, T., Nakanishi, H., Yamazaki, T., Ishida, M., Imagawa, M., & Shimizu, T. (2005) · Journal of Chromatography B · doi:10.1016/j.jchromb.2005.06.005 · Cited by 216 · see citing works
MetaboMiner – semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
Xia, J., Bjorndahl, T. C., Tang, P., & Wishart, D. S. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-507 · Cited by 205 · see citing works
Optimized metabolite extraction from blood serum for 1H nuclear magnetic resonance spectroscopy
Tiziani, S., Emwas, A.-H. M., Lodi, A., Ludwig, C., Bunce, C. M., Viant, M. R., & Günther, U. L. (2008) · Analytical Biochemistry · doi:10.1016/j.ab.2008.01.037 · Cited by 194 · see citing works
Benzo[ a ]pyrene Metabolites: Efficient and Rapid Separation by High-Pressure Liquid Chromatography
Selkirk, J. K., Croy, R. G., & Gelboin, H. V. (1974) · Science · doi:10.1126/science.184.4133.169 · Cited by 191 · see citing works
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Lange, E., Tautenhahn, R., Neumann, S., & Gröpl, C. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-375 · Cited by 188 · see citing works
Li, X., Yi, E. C., Kemp, C. J., Zhang, H., & Aebersold, R. H. (2005) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500141-mcp200 · Cited by 184 · see citing works
Patel, K. D., Jerkovich, A. D., Link, J. C., & Jorgenson, J. W. (2004) · Analytical Chemistry · doi:10.1021/ac049756x · Cited by 180 · see citing works
Variation of metabolites in normal human urine
Saude, E. J., Adamko, D. J., Rowe, B. H., Marrie, T. J., & Sykes, B. D. (2007) · Metabolomics · doi:10.1007/s11306-007-0091-1 · Cited by 178 · see citing works
Clarke, F. C., Jamieson, M. J., Clark, D. A., Hammond, S. V., Jee, R. D., & Moffat, A. C. (2001) · Analytical Chemistry · doi:10.1021/ac001327l · Cited by 166 · see citing works
Peer Reviewed: Systematic LC/MS Metabolite Identification in Drug Discovery
Clarke, N. J., Rindgen, D., Korfmacher, W. A., & Cox, K. (2001) · Analytical Chemistry · doi:10.1021/ac012480y · Cited by 155 · see citing works
Issaq, H. J., Nativ, O., Waybright, T. J., Luke, B. T., Veenstra, T. D., Issaq, E., Kravstov, A., & Mullerad, M. (2008) · The Journal of Urology · doi:10.1016/j.juro.2008.01.084 · Cited by 153 · see citing works
Application of Mass Spectrometry for Metabolite Identification
Ma, S., Chowdhury, S. K., & Alton, K. B. (2006) · Current Drug Metabolism · doi:10.2174/138920006777697891 · Cited by 149 · see citing works
Hyberts, S. G., Heffron, G. J., Tarragona, N. G., Solanky, K. S., Edmonds, K. A., Luithardt, H., Fejzo, J., Chorev, M., Aktaş, H., Colson, K. L., et al. (2007) · Journal of the American Chemical Society · doi:10.1021/ja068541x · Cited by 137 · see citing works
Structural Elucidation with NMR Spectroscopy: Practical Strategies for Organic Chemists
Kwan, E. E., & Huang, S. (2008) · European Journal of Organic Chemistry · doi:10.1002/ejoc.200700966 · Cited by 135 · see citing works
Urinary Metabolite Quantification Employing 2D NMR Spectroscopy
Gronwald, W., Klein, M. S., Kaspar, H., Fagerer, S. R., Nürnberger, N., Dettmer, K., Bertsch, T., & Oefner, P. J. (2008) · Analytical Chemistry · doi:10.1021/ac801627c · Cited by 133 · see citing works
Web Server Based Complex Mixture Analysis by NMR
Robinette, S. L., Zhang, F., Bruschweiler‐Li, L., & Brüschweiler, R. (2008) · Analytical Chemistry · doi:10.1021/ac702530t · Cited by 117 · see citing works
Mass spectrometric techniques in nucleic acid research
Crain, P. F. (1990) · Mass Spectrometry Reviews · doi:10.1002/mas.1280090504 · Cited by 116 · see citing works
Electrospray ionization mass spectrometry of
Khaselev, N., & Murphy, R. C. (2000) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(99)00158-0 · Cited by 111 · see citing works
Williams, R. E., Lenz, E. M., Evans, J. A., Wilson, I. D., Granger, J. H., Plumb, R. S., & Stumpf, C. L. (2005) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2005.01.013 · Cited by 109 · see citing works
Spraul, M., Neidig, P., Klauck, U., Kessler, P., Holmes, E. C., Nicholson, J. K., Sweatman, B. C., Salman, S. R., Farrant, R. D., Rahr, E., et al. (1994) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/0731-7085(94)00073-5 · Cited by 107 · see citing works
A geometric approach for the alignment of liquid chromatography—mass spectrometry data
Lange, E., Gröpl, C., Schulz-Trieglaff, O. B., Leinenbach, A., Huber, C. G., & Reinert, K. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm209 · Cited by 101 · see citing works
Beckwith-Hall, B. M., Brindle, J. T., Barton, R. H., Coen, M., Holmes, E. C., Nicholson, J. K., & Antti, H. (2002) · The Analyst · doi:10.1039/b205128c · Cited by 98 · see citing works
Water Signal Suppression in NMR Spectroscopy
Price, W. S. (1999) · Annual reports on NMR spectroscopy · doi:10.1016/s0066-4103(08)60040-x · Cited by 94 · see citing works
Jellum, E., Stokke, O., & Eldjarn, L. (1971) · Scandinavian Journal of Clinical and Laboratory Investigation · doi:10.3109/00365517109080219 · Cited by 88 · see citing works
Heteronuclear-Detected Diffusion-Ordered NMR Spectroscopy through Coherence Transfer
Wu, D., Chen, A., & Johnson, C. S. (1996) · Journal of Magnetic Resonance Series A · doi:10.1006/jmra.1996.0239 · Cited by 87 · see citing works
d-Serine-induced nephrotoxicity: a HPLC–TOF/MS-based metabonomics approach
Williams, R. E., Major, H. J., Lock, E. A., Lenz, E. M., & Wilson, I. D. (2004) · Toxicology · doi:10.1016/j.tox.2004.08.023 · Cited by 82 · see citing works
Potts, B. C. M., Deese, A. J., Stevens, G. J., Reily, M. D., Robertson, D. G., & Theiss, J. C. (2001) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/s0731-7085(01)00430-7 · Cited by 80 · see citing works
Data pre-processing in liquid chromatography-mass spectrometry-based proteomics
Zhang, X., Asara, J. M., Adamec, J., Ouzzani, M., & Elmagarmid, A. K. (2005) · Computer applications in the biosciences · doi:10.1093/bioinformatics/bti660 · Cited by 79 · see citing works
Ivanov, A. R., Horváth, C., & Karger, B. L. (2003) · Electrophoresis · doi:10.1002/elps.200305620 · Cited by 79 · see citing works
Comparison of 1D and 2D NMR Spectroscopy for Metabolic Profiling
Van, Q. N., Issaq, H. J., Jiang, Q., Li, Q., Muschik, G. M., Waybright, T. J., Lou, H., Dean, M. C., Uitto, J., & Veenstra, T. D. (2007) · Journal of Proteome Research · doi:10.1021/pr700594s · Cited by 77 · see citing works
Jia, L., Chen, J., Yin, P., Lu, X., & Xu, G. (2008) · Metabolomics · doi:10.1007/s11306-008-0110-x · Cited by 77 · see citing works
Metabolic fingerprinting with capillary electrophoresis
García‐Pérez, I., Vallejo, M., Garcı́a, A., Legido‐Quigley, C., & Barbas, C. (2008) · Journal of Chromatography A · doi:10.1016/j.chroma.2008.07.025 · Cited by 76 · see citing works
Griffin, J. L., Nicholls, A. W., Daykin, C. A., Heald, S. L., Keun, H. C., Schuppe‐Koistinen, I., Griffiths, J. R., Cheng, L. L., Rocca‐Serra, P., Rubtsov, D. V., et al. (2007) · Metabolomics · doi:10.1007/s11306-007-0077-z · Cited by 76 · see citing works
Yang, W., Sedlák, M., Regnier, F. E., Mosier, N. S., Ho, N. W. Y., & Adamec, J. (2008) · Analytical Chemistry · doi:10.1021/ac801693c · Cited by 75 · see citing works
Robust Deconvolution of Complex Mixtures by Covariance TOCSY Spectroscopy
Zhang, F., & Brüschweiler, R. (2007) · Angewandte Chemie International Edition · doi:10.1002/anie.200604599 · Cited by 75 · see citing works
DSA: A New Internal Standard for NMR Studies in Aqueous Solution
Nowick, J. S., Khakshoor, O., Hashemzadeh, M., & Brower, J. O. (2003) · Organic Letters · doi:10.1021/ol035347w · Cited by 74 · see citing works
A note on normalization of biofluid 1D 1H-NMR data
Torgrip, R. J. O., Åberg, K. M., Alm, E., Schuppe‐Koistinen, I., & Lindberg, J. (2008) · Metabolomics · doi:10.1007/s11306-007-0102-2 · Cited by 72 · see citing works
Utility of separation science in metabolomic studies
Issaq, H. J., Abbott, E., & Veenstra, T. D. (2008) · Journal of Separation Science · doi:10.1002/jssc.200700601 · Cited by 70 · see citing works
Jellum, E., Bjørnson, I., Nesbakken, R., Johansson, E., & Wold, S. (1981) · Journal of Chromatography A · doi:10.1016/s0021-9673(00)88077-2 · Cited by 70 · see citing works
Timischl, B., Dettmer, K., Kaspar, H., Thieme, M., & Oefner, P. J. (2008) · Electrophoresis · doi:10.1002/elps.200700517 · Cited by 68 · see citing works
Improved identification of metabolites in complex mixtures using HSQC NMR spectroscopy
Xi, Y., de Ropp, J. S., Viant, M. R., Woodruff, D. L., & Yu, P. (2008) · Analytica Chimica Acta · doi:10.1016/j.aca.2008.03.024 · Cited by 66 · see citing works
Dumas, M., Canlet, C., André, F., Vercauteren, J., & Paris, A. (2002) · Analytical Chemistry · doi:10.1021/ac0156870 · Cited by 63 · see citing works
WERF, M. J. V. D., Takors, R., Smedsgaard, J., Nielsen, J., Ferenci, T., Portais, J., Wittmann, C., Hooks, M. A., Tomassini, A., Oldiges, M., et al. (2007) · Metabolomics · doi:10.1007/s11306-007-0080-4 · Cited by 61 · see citing works
Proposed reporting requirements for the description of NMR-based metabolomics experiments
Rubtsov, D. V., JENKINS, H. A., Ludwig, C., Easton, J. M., Viant, M. R., Günther, U. L., Griffin, J. L., & Hardy, N. W. (2007) · Metabolomics · doi:10.1007/s11306-006-0040-4 · Cited by 56 · see citing works
Sample treatments prior to capillary electrophoresis–mass spectrometry
Hernández‐Borges, J., Borges‐Miquel, T. M., Rodríguez‐Delgado, M. Á., & Cifuentes, A. (2006) · Journal of Chromatography A · doi:10.1016/j.chroma.2006.10.070 · Cited by 55 · see citing works
Analysis of nucleic acid constituents by on‐line capillary electrophoresis‐mass spectrometry
Willems, A. V., Deforce, D. L. D., Peteghem, C. H. V., & Bocxlaer, J. F. V. (2005) · Electrophoresis · doi:10.1002/elps.200410278 · Cited by 53 · see citing works
Capillary LC Coupled with High-Mass Measurement Accuracy Mass Spectrometry for Metabolic Profiling
Ding, J., Sorensen, C. M., Zhang, Q., Jiang, H., Jaitly, N., Livesay, E. A., Shen, Y., Smith, R. D., & Metz, T. (2007) · Analytical Chemistry · doi:10.1021/ac070080q · Cited by 52 · see citing works
Sandusky, P. O., & Raftery, D. (2005) · Analytical Chemistry · doi:10.1021/ac0510890 · Cited by 52 · see citing works
Automated screening for metabolites in complex mixtures using 2D COSY NMR spectroscopy
Xi, Y., de Ropp, J. S., Viant, M. R., Woodruff, D. L., & Yu, P. (2006) · Metabolomics · doi:10.1007/s11306-006-0036-0 · Cited by 52 · see citing works
Correcting ligands, metabolites, and pathways
Ott, M. A., & Vriend, G. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-517 · Cited by 51 · see citing works
Balayssac, S., Delsuc, M., Gilard, V., Prigent, Y., & Malet‐Martino, M. (2008) · Journal of Magnetic Resonance · doi:10.1016/j.jmr.2008.09.022 · Cited by 49 · see citing works
Bertram, H. C., Malmendal, A., Petersen, B. O., Madsen, J. C., Pedersen, H., Nielsen, N. C., Hoppe, C., Mølgaard, C., Michaelsen, K. F., & Duus, J. Ø. (2007) · Analytical Chemistry · doi:10.1021/ac070928a · Cited by 48 · see citing works
Improvements in Complex Mixture Analysis by NMR: DQF-COSY iDOSY
Newman, J. M., & Jerschow, A. (2007) · Analytical Chemistry · doi:10.1021/ac061760g · Cited by 44 · see citing works
Comparison of different search engines using validated MS/MS test datasets
Boutilier, K., Ross, M. M., Podtelejnikov, A. V., Orsi, C., Taylor, R., Taylor, P. P., & Figeys, D. (2004) · Analytica Chimica Acta · doi:10.1016/j.aca.2004.04.047 · Cited by 43 · see citing works
Tomita, M., & Nishioka, T. (2005) · Springer eBooks · doi:10.1007/4-431-28055-3 · Cited by 41 · see citing works
Validation of a urine metabolome fingerprint in dog for phenotypic classification
Viant, M. R., Ludwig, C., Rhodes, S., Günther, U. L., & Allaway, D. (2007) · Metabolomics · doi:10.1007/s11306-007-0092-0 · Cited by 41 · see citing works
Homeostatic Signature of Anabolic Steroids in Cattle Using 1H−13C HMBC NMR Metabonomics
Dumas, M., Canlet, C., Vercauteren, J., André, F., & Paris, A. (2005) · Journal of Proteome Research · doi:10.1021/pr0500556 · Cited by 38 · see citing works
Zhang, F., Bruschweiler‐Li, L., & Robinette, S. L. (2008) · Analytical Chemistry · doi:10.1021/ac801116u · Cited by 34 · see citing works
Evaluating Low-Intensity Unknown Signals in Quantitative Proton NMR Mixture Analysis
Weljie, A. M., Newton, J., Jirik, F. R., & Vogel, H. J. (2008) · Analytical Chemistry · doi:10.1021/ac8012362 · Cited by 31 · see citing works
Baykal, A. T., Jain, M. R., & Hong Li, A. (2008) · Metabolomics · doi:10.1007/s11306-008-0125-3 · Cited by 29 · see citing works
Validation of a urine metabolome fingerprint in dog for phenotypic classification
Viant, M. R., Ludwig, C., Rhodes, S., Günther, U. L., & Allaway, D. (2009) · Metabolomics · doi:10.1007/s11306-009-0172-4 · Cited by 28 · see citing works
2D NMR metabonomic analysis: a novel method for automated peak alignment
Zheng, M., Lü, P., Liu, Y., Pease, J. H. B., Usuka, J., Liao, G., & Peltz, G. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm427 · Cited by 27 · see citing works
Metabolic analysis of human biological fluids by 1H NMR spectroscopy
Kolokolova, T. N., Savel’ev, O. Y., & Sergeev, N. M. (2008) · Journal of Analytical Chemistry · doi:10.1134/s1061934808020020 · Cited by 26 · see citing works
Two-Dimensional Correlation Analysis of Nuclear Magnetic Resonance Metabonomics Data
Šašić, S. (2008) · Applied Spectroscopy · doi:10.1366/000370208785284439 · Cited by 20 · see citing works
Issaq, H. J., Fox, S. D., & Muschik, G. M. (1989) · Journal of Chromatographic Science · doi:10.1093/chromsci/27.4.172 · Cited by 17 · see citing works
Whitehead, T. L., Monzavi‐Karbassi, B., & Kieber‐Emmons, T. (2005) · Metabolomics · doi:10.1007/s11306-005-0006-y · Cited by 15 · see citing works
HORA suite: a database and software for human metabolomics
Bruschi, S., Calzolari, D., Coquin, L., & Paternostro, G. (2007) · Metabolomics · doi:10.1007/s11306-007-0095-x · Cited by 8 · see citing works
Korfmacher, W. A. (2006) · Current Drug Metabolism · doi:10.2174/138920006777697945 · Cited by 8 · see citing works
Flagged first, then by citations
1 of the 133 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Global metabolic profiling of animal and human tissues via UPLC-MS
Want, E. J., Masson, P., Michopoulos, F., Wilson, I. D., Theodoridis, G. A., Plumb, R. S., Shockcor, J. P., Loftus, N. J., Holmes, E. C., & Nicholson, J. K. (2012) · Nature Protocols · doi:10.1038/nprot.2012.135 · Cited by 1,628 · see citing works
The food metabolome: a window over dietary exposure
Scalbert, A., Brennan, L., Manach, C., Andres-Lacueva, C., Dragsted, L. O., Draper, J., Rappaport, S. M., van der Hooft, J. J., & Wishart, D. S. (2014) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.113.076133 · Cited by 519 · see citing works
Advances in structure elucidation of small molecules using mass spectrometry
Kind, T., & Fiehn, O. (2010) · Bioanalytical reviews · doi:10.1007/s12566-010-0015-9 · Cited by 491 · see citing works
Targeted Metabolomics for Biomarker Discovery
Griffiths, W. J., Koal, T., Wang, Y., Kohl, M., Enot, D. P., & Deigner, H. (2010) · Angewandte Chemie International Edition · doi:10.1002/anie.200905579 · Cited by 418 · see citing works
Foodomics: MS‐based strategies in modern food science and nutrition
Herrero, M., Simó, C., García‐Cañas, V., Ibáñez, E., & Cifuentes, A. (2011) · Mass Spectrometry Reviews · doi:10.1002/mas.20335 · Cited by 397 · see citing works
Smolinska, A., Blanchet, L., Buydens, L. M. C., & Wijmenga, S. S. (2012) · Analytica Chimica Acta · doi:10.1016/j.aca.2012.05.049 · Cited by 396 · see citing works
Metabolomics for clinical use and research in chronic kidney disease
Hocher, B., & Adamski, J. (2017) · Nature Reviews Nephrology · doi:10.1038/nrneph.2017.30 · Cited by 335 · see citing works
Metabolomics for Plant Improvement: Status and Prospects
Kumar, R., Bohra, A., Pandey, A. K., Pandey, M. K., & Kumar, A. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01302 · Cited by 330 · see citing works
STATISTICAL METHODS FOR THE ANALYSIS OF HIGH-THROUGHPUT METABOLOMICS DATA
Bartel, J., Krumsiek, J., & Theis, F. J. (2013) · Computational and Structural Biotechnology Journal · doi:10.5936/csbj.201301009 · Cited by 297 · see citing works
NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations
Emwas, A.-H. M., Salek, R. M., Griffin, J. L., & Merzaban, J. S. (2013) · Metabolomics · doi:10.1007/s11306-013-0524-y · Cited by 296 · see citing works
Recent and potential developments in the analysis of urine: A review
Ryan, D., Robards, K., Prenzler, P. D., & Kendall, M. (2010) · Analytica Chimica Acta · doi:10.1016/j.aca.2010.10.035 · Cited by 211 · see citing works
Data-processing strategies for metabolomics studies
Hendriks, M. M. W. B., van Eeuwijk, F. A., Jellema, R. H., Westerhuis, J. A., Reijmers, T. H., Hoefsloot, H. C. J., & Smilde, A. K. (2011) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2011.04.019 · Cited by 199 · see citing works
Analytical Approaches to Metabolomics and Applications to Systems Biology
Wang, J., Byun, J., & Pennathur, S. (2010) · Seminars in Nephrology · doi:10.1016/j.semnephrol.2010.07.007 · Cited by 196 · see citing works
Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants
Raza, A. (2020) · Plant Cell Reports · doi:10.1007/s00299-020-02635-8 · Cited by 148 · see citing works
Tzoulaki, I., Ebbels, T. M. D., Valdes, A. M., Elliott, P., & Ioannidis, J. P. A. (2014) · American Journal of Epidemiology · doi:10.1093/aje/kwu143 · Cited by 183 · see citing works
Differences in Metabolism between the Biofilm and Planktonic Response to Metal Stress
Booth, S. C., Workentine, M. L., Wen, J., Shaykhutdinov, R. A., Vogel, H. J., Ceri, H., Turner, R. J., & Weljie, A. M. (2011) · Journal of Proteome Research · doi:10.1021/pr2002353 · Cited by 183 · see citing works
Computational mass spectrometry for small molecules
Scheubert, K., Hufsky, F., & Böcker, S. (2013) · Journal of Cheminformatics · doi:10.1186/1758-2946-5-12 · Cited by 174 · see citing works
Wang, X.-J., Sun, H., Zhang, A., Wang, P., & Han, Y. (2011) · Journal of Separation Science · doi:10.1002/jssc.201100333 · Cited by 149 · see citing works
NMR techniques in biomedical and pharmaceutical analysis
Malet‐Martino, M., & Holzgrabe, U. (2010) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2010.12.023 · Cited by 140 · see citing works
Barsan, C. I., Zouine, M., Maza, É., Bian, W.-P., Egea, I., Rossignol, M., Bouyssié, D., Pichereaux, C., Purgatto, E., Bouzayen, M., et al. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.112.203679 · Cited by 139 · see citing works
Vinayavekhin, N., & Saghatelian, A. (2010) · Current Protocols in Molecular Biology · doi:10.1002/0471142727.mb3001s90 · Cited by 136 · see citing works
Evaluation of Fast 2D NMR for Metabolomics
Guennec, A. D. L., Giraudeau, P., & Caldarelli, S. (2014) · Analytical Chemistry · doi:10.1021/ac500966e · Cited by 132 · see citing works
Plant Metabolomics: Current Initiatives and Future Prospects
Sudha, M., Rajagopalan, V. R., Kambale, R., Raghu, R., Kanagarajan, S., & Raveendran, M. (2023) · Current Issues in Molecular Biology · doi:10.3390/cimb45110558 · Cited by 123 · see citing works
1 H NMR-based metabolomic study of metabolic profiling for systemic lupus erythematosus
Ouyang, X., Dai, Y., Wen, J., & Wang, L. (2011) · Lupus · doi:10.1177/0961203311418707 · Cited by 121 · see citing works
In Vitro Evaluation of Potential Hepatotoxicity Induced by Drugs
Gómez-Lechón, M. J., Lahoz, A., Gombau, L., Castell, J. V., & Donato, M. T. (2010) · Current Pharmaceutical Design · doi:10.2174/138161210791208910 · Cited by 121 · see citing works
Yin, P., & Xu, G. (2014) · Journal of Chromatography A · doi:10.1016/j.chroma.2014.11.050 · Cited by 121 · see citing works
Gene Expression Analysis, Proteomics, and Network Discovery
Baginsky, S., Hennig, L., Zimmermann, P., & Gruissem, W. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.150433 · Cited by 119 · see citing works
Study on toxicity effects of environmental pollutants based on metabolomics: A review
Liu, L., Wu, Q., Miao, X., Fan, T., Meng, Z., Chen, X., & Zhu, W. (2021) · Chemosphere · doi:10.1016/j.chemosphere.2021.131815 · Cited by 119 · see citing works
Feature Selection Methods for Early Predictive Biomarker Discovery Using Untargeted Metabolomic Data
Grissa, D., Pétéra, M., Brandolini, M., Napoli, A., Comte, B., & Pujos‐Guillot, E. (2016) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2016.00030 · Cited by 114 · see citing works
NMR-based metabolomics: From sample preparation to applications in nutrition research
Brennan, L. (2014) · Progress in Nuclear Magnetic Resonance Spectroscopy · doi:10.1016/j.pnmrs.2014.09.001 · Cited by 112 · see citing works
Metabolomics as a tool in nutritional research
Gibbons, H., O’Gorman, A., & Brennan, L. (2014) · Current Opinion in Lipidology · doi:10.1097/mol.0000000000000140 · Cited by 108 · see citing works
Harada, S., Takebayashi, T., Kurihara, A., Akiyama, M. O., Suzuki, A., Hatakeyama, Y., Sugiyama, D., Kuwabara, K., Takeuchi, A., Okamura, T., et al. (2015) · Environmental Health and Preventive Medicine · doi:10.1007/s12199-015-0494-y · Cited by 108 · see citing works
Novel MS-based approaches and applications in food metabolomics
Ibáñez, C., García‐Cañas, V., Valdés, A., & Simó, C. (2013) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2013.06.015 · Cited by 103 · see citing works
Evaluating and minimizing batch effects in metabolomics
Han, W., & Li, L. (2022) · Mass Spectrometry Reviews · doi:10.1002/mas.21672 · Cited by 105 · see citing works
Rapid metabolic evolution in human prefrontal cortex
Fu, X., Giavalisco, P., Liu, X., Catchpole, G., Fu, N., Ning, Z., Guo, S., Zheng, Y., Somel, M., Pääbo, S., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1019164108 · Cited by 99 · see citing works
Nutrigenomics and Personalized Diets: What Will They Mean for Food?
German, J. B., Zivkovic, A. M., Dallas, D. C., & Smilowitz, J. T. (2011) · Annual Review of Food Science and Technology · doi:10.1146/annurev.food.102308.124147 · Cited by 90 · see citing works
Hybrid Feature Detection and Information Accumulation Using High-Resolution LC–MS Metabolomics Data
Yu, T., Park, Y. H., Li, S., & Jones, D. P. (2013) · Journal of Proteome Research · doi:10.1021/pr301053d · Cited by 87 · see citing works
Metabolomics in cardiovascular diseases
Kordalewska, M., & Markuszewski, M. J. (2015) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2015.04.021 · Cited by 85 · see citing works
Using ‘omics’ to define pathogenesis and biomarkers of Parkinson’s disease
Caudle, W. M., Bammler, T. K., Lin, Y. S., Pan, S., & Zhang, J. (2010) · Expert Review of Neurotherapeutics · doi:10.1586/ern.10.54 · Cited by 83 · see citing works
Chemometric methods in NMR spectroscopic analysis of food products
Monakhova, Y. B., Kuballa, T., & Lachenmeier, D. W. (2013) · Journal of Analytical Chemistry · doi:10.1134/s1061934813090098 · Cited by 79 · see citing works
Analysis of Exhaled Breath Volatile Organic Compounds in Inflammatory Bowel Disease: A Pilot Study
Hicks, L., Huang, J., Kumar, S., Powles, S., Orchard, T. R., Hanna, G. B., & Williams, H. R. T. (2015) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjv102 · Cited by 78 · see citing works
MS-based Plant Metabolomic Approaches for Biomarker Discovery
Wolfender, J., Glauser, G., Boccard, J., & Rudaz, S. L. (2009) · Natural Product Communications · doi:10.1177/1934578x0900401019 · Cited by 76 · see citing works
COMPUTATIONAL TOOLS FOR THE SECONDARY ANALYSIS OF METABOLOMICS EXPERIMENTS
Booth, S. C., Weljie, A. M., & Turner, R. J. (2013) · Computational and Structural Biotechnology Journal · doi:10.5936/csbj.201301003 · Cited by 74 · see citing works
Torras‐Claveria, L., Berkov, S. H., Codina, C. J., Viladomat, F., & Bastida, J. (2014) · Industrial Crops and Products · doi:10.1016/j.indcrop.2014.03.008 · Cited by 74 · see citing works
Kebede, B., Grauwet, T., Tabilo‐Munizaga, G., Palmers, S., Vervoort, L., Hendrickx, M., & Loey, A. M. V. (2013) · Food Chemistry · doi:10.1016/j.foodchem.2013.05.097 · Cited by 74 · see citing works
Ghaffari, M. H., Jahanbekam, A., Sadri, H., Schuh, K., Dusel, G., Prehn, C. P., Adamski, J., Koch, C., & Sauerwein, H. (2019) · Journal of Dairy Science · doi:10.3168/jds.2019-17114 · Cited by 74 · see citing works
Mass Spectrometry-Based Technologies for High-Throughput Metabolomics
Han, J., Datla, R. S. S., Chan, S., & Borchers, C. H. (2009) · Bioanalysis · doi:10.4155/bio.09.158 · Cited by 73 · see citing works
NMR-based metabolomics of mammalian cell and tissue cultures
Aranı́bar, N., Borys, M., Mackin, N. A., Ly, V. T., Abu‐Absi, N. R., Abu-Absi, S. F., Niemitz, M., Schilling, B. M., Li, Z. J., Brock, B. J., et al. (2011) · Journal of Biomolecular NMR · doi:10.1007/s10858-011-9490-8 · Cited by 70 · see citing works
Metabolomics for mitochondrial and cancer studies
Nagrath, D., Caneba, C. A., Karedath, T., & Bellancé, N. (2011) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2011.03.006 · Cited by 69 · see citing works
Fanos, V., Pintus, M. C., Lussu, M., Atzori, L., Noto, A., Stronati, M., Guimarães, H., Marcialis, M. A., Rocha, G., Moretti, C., et al. (2014) · The Journal of Maternal-Fetal & Neonatal Medicine · doi:10.3109/14767058.2014.955966 · Cited by 68 · see citing works
Breast Cancer Metabolomics: From Analytical Platforms to Multivariate Data Analysis. A Review
Silva, C. L., Perestrelo, R., Silva, P., Tomás, H., & Câmara, J. S. (2019) · Metabolites · doi:10.3390/metabo9050102 · Cited by 70 · see citing works
Metabolism in Chronic Fatigue Syndrome
Armstrong, C. W., McGregor, N., Butt, H. L., & Gooley, P. R. (2014) · Advances in clinical chemistry · doi:10.1016/b978-0-12-801401-1.00005-0 · Cited by 66 · see citing works
Getting the right answers: understanding metabolomics challenges
Beisken, S., Eiden, M. J., & Salek, R. M. (2014) · Expert Review of Molecular Diagnostics · doi:10.1586/14737159.2015.974562 · Cited by 62 · see citing works
Schiesel, S., Lämmerhofer, M., & Lindner, W. F. (2010) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-009-3432-2 · Cited by 63 · see citing works
Metabolomics in the developmental origins of obesity and its cardiometabolic consequences
Hivert, M., Perng, W., Watkins, S. M., Newgard, C. B., Kenny, L. C., Kristal, B. S., Patti, M., ISGANAITIS, E. M., DeMeo, D. L., Oken, E., et al. (2015) · Journal of Developmental Origins of Health and Disease · doi:10.1017/s204017441500001x · Cited by 60 · see citing works
Xu, F., Zou, L., Ong, C. N., Zou, L., Ong, C. N., & Ong, C. N. (2010) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2009.12.007 · Cited by 57 · see citing works
Vielhauer, O., Zakhartsev, M. V., Horn, T. L., Takors, R., & Reuß, M. (2011) · Journal of Chromatography B · doi:10.1016/j.jchromb.2011.10.036 · Cited by 57 · see citing works
Chalcraft, K. R., & McCarry, B. E. (2013) · Journal of Separation Science · doi:10.1002/jssc.201300779 · Cited by 56 · see citing works
Noto, A., Fanos, V., & Dessì, A. (2016) · Advances in clinical chemistry · doi:10.1016/bs.acc.2015.12.006 · Cited by 56 · see citing works
Capasso, L., Vento, G., Loddo, C., Tirone, C., Iavarone, F., Raimondi, F., Dani, C., & Fanos, V. (2019) · Frontiers in Pediatrics · doi:10.3389/fped.2019.00030 · Cited by 56 · see citing works
Yu, T., & Jones, D. P. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu430 · Cited by 55 · see citing works
Toxicometabolomics: Small Molecules to Answer Big Toxicological Questions
Araújo, A. M., Carvalho, F. D., de Pinho, P. G., & Carvalho, M. C. (2021) · Metabolites · doi:10.3390/metabo11100692 · Cited by 54 · see citing works
Chen, Q., Park, H. C., Goligorsky, M. S., Chander, P. N., Fischer, S. M., & Gross, S. S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037149 · Cited by 52 · see citing works
A fully automated iterative moving averaging (AIMA) technique for baseline correction
Prakash, B. D., & Wei, Y. C. (2011) · The Analyst · doi:10.1039/c0an00778a · Cited by 52 · see citing works
Simó, C., Ibáñez, C., Gómez‐Martínez, Á., Ferragut, J. A., & Cifuentes, A. (2011) · Electrophoresis · doi:10.1002/elps.201100019 · Cited by 50 · see citing works
Foodomics strategies for the analysis of transgenic foods
Valdés, A., Simó, C., Ibáñez, C., & García‐Cañas, V. (2013) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2013.05.023 · Cited by 48 · see citing works
Metabolic analysis of osteoarthritis subchondral bone based on UPLC/Q-TOF-MS
Yang, G., Zhang, H., Chen, T., Zhu, W., Ding, S., Xu, K., Xu, Z., Guo, Y., & Zhang, J. (2016) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-016-9524-x · Cited by 48 · see citing works
Playdon, M. C., Joshi, A. D., Tabung, F. K., Cheng, S. C., Henglin, M., Kim, A., Lin, T., van Roekel, E. H., Huang, J., Krumsiek, J., et al. (2019) · Metabolites · doi:10.3390/metabo9070145 · Cited by 46 · see citing works
Witherspoon, M., Chen, Q., Kopelovich, L., Gross, S. S., & Lipkin, S. M. (2013) · Cancer Discovery · doi:10.1158/2159-8290.cd-12-0305 · Cited by 45 · see citing works
Urinary biomarkers of dietary intake: a review
Clarke, E. D., Rollo, M. E., Pezdirc, K., Collins, C. E., & Haslam, R. L. (2019) · Nutrition Reviews · doi:10.1093/nutrit/nuz048 · Cited by 44 · see citing works
Proteomics and metabolomics in renal transplantation-quo vadis?
Bohra, R., Klepacki, J., Klawitter, J., Klawitter, J., Thurman, J. M., & Christians, U. (2012) · Transplant International · doi:10.1111/tri.12003 · Cited by 44 · see citing works
Metabolomics: A High-Throughput Platform for Metabolite Profile Exploration
Cheng, J. Q., Lan, W., Zheng, G., & Gao, X. (2018) · Methods in molecular biology · doi:10.1007/978-1-4939-7717-8_16 · Cited by 44 · see citing works
Yu, T., & Peng, H. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-559 · Cited by 43 · see citing works
Xu, F., Zou, L., & Ong, C. N. (2009) · Journal of Proteome Research · doi:10.1021/pr900738b · Cited by 41 · see citing works
Current status and future prospects of toxicogenomics in drug discovery
Khan, S. R., Baghdasarian, A., Fahlman, R. P., Michail, K., & Siraki, A. G. (2013) · Drug Discovery Today · doi:10.1016/j.drudis.2013.11.001 · Cited by 42 · see citing works
Metabolomics in Prenatal Medicine: A Review
Monni, G., Atzori, L., Corda, V., Dessolis, F., Iuculano, A., Hurt, K. J., & Murgia, F. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.645118 · Cited by 41 · see citing works
Applications of chromatographic methods in metabolomics: A review
Ovbude, S. T., Sharmeen, S., Kyei, I., Olupathage, H., Jones, J. F., Bell, R. J., Powers, R., & Hage, D. S. (2024) · Journal of Chromatography B · doi:10.1016/j.jchromb.2024.124124 · Cited by 42 · see citing works
De novo analysis of electron impact mass spectra using fragmentation trees
Hufsky, F., Rempt, M., Rasche, F., Pohnert, G., & Böcker, S. (2012) · Analytica Chimica Acta · doi:10.1016/j.aca.2012.06.021 · Cited by 37 · see citing works
Metal interactions in mice under environmental stress
García-Sevillano, M. Á., Jara-Biedma, R., González-Fernández, M., García‐Barrera, T., & Gómez‐Ariza, J. L. (2013) · BioMetals · doi:10.1007/s10534-013-9642-2 · Cited by 37 · see citing works
Metabolomics of mammalian brain reveals regional differences
Choi, W. T.-S., Tosun, M., Jeong, H.-H., Karakas, C., Semerci, F., Liu, Z., & Maletić‐Savatić, M. (2018) · BMC Systems Biology · doi:10.1186/s12918-018-0644-0 · Cited by 37 · see citing works
Enzymatic Methods for Salivary Biomarkers Detection: Overview and Current Challenges
Ornelas‐González, A., Ortiz‐Martínez, M., González‐González, M., & Rito‐Palomares, M. (2021) · Molecules · doi:10.3390/molecules26227026 · Cited by 37 · see citing works
Chemotaxonomy, an Efficient Tool for Medicinal Plant Identification: Current Trends and Limitations
Amin, A., & Park, S. (2025) · Plants · doi:10.3390/plants14142234 · Cited by 38 · see citing works
Global proteomics and metabolomics in cancer biomarker discovery
Issaq, H. J., Fox, S. D., Chan, K. C., & Veenstra, T. D. (2011) · Journal of Separation Science · doi:10.1002/jssc.201100528 · Cited by 35 · see citing works
Wang, Y., Wang, Y., Li, M., Pengcheng, X., Gu, T., Ma, T., & Gu, S. (2012) · Molecular BioSystems · doi:10.1039/c2mb25224d · Cited by 35 · see citing works
Chemometrics for the analysis of chromatographic data in metabolomics investigations
Cook, D. W., & Rutan, S. C. (2014) · Journal of Chemometrics · doi:10.1002/cem.2624 · Cited by 35 · see citing works
Christin, C., Bischoff, R., & Horvatovich, P. L. (2010) · Talanta · doi:10.1016/j.talanta.2010.10.029 · Cited by 32 · see citing works
Bervoets, L., Louis, E., Reekmans, G., Mesotten, L., Thomeer, M., Adriaensens, P., & Linsen, L. (2015) · Metabolomics · doi:10.1007/s11306-015-0774-y · Cited by 32 · see citing works
Towards a Universal Approach Based on Omics Technologies for the Quality Control of Food
Ferri, E., Galimberti, A., Casiraghi, M., Airoldi, C., Ciaramelli, C., Palmioli, A., Mezzasalma, V., Bruni, I., & Labra, M. (2015) · BioMed Research International · doi:10.1155/2015/365794 · Cited by 30 · see citing works
Chang, H.-Y., Chen, C.-T., Lih, T. M., Lynn, K., Juo, C., Hsu, W.-L., & Sung, T.-Y. (2016) · PLoS ONE · doi:10.1371/journal.pone.0146112 · Cited by 30 · see citing works
Data handling and data analysis in metabolomic studies of essential oils using GC-MS
Lebanov, L., Ghiasvand, A., & Paull, B. (2021) · Journal of Chromatography A · doi:10.1016/j.chroma.2021.461896 · Cited by 32 · see citing works
Urakami, K., Zangiacomi, V., Yamaguchi, K., & Kusuhara, M. (2010) · Biomedical Research · doi:10.2220/biomedres.31.161 · Cited by 30 · see citing works
Predicting the Presence of Uncommon Elements in Unknown Biomolecules from Isotope Patterns
Meusel, M., Hufsky, F., Panter, F., Krug, D., Müller, R., & Böcker, S. (2016) · Analytical Chemistry · doi:10.1021/acs.analchem.6b01015 · Cited by 29 · see citing works
Esposito, R., Federico, S., Glaviano, F., Somma, E., Zupo, V., & Costantini, M. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231810680 · Cited by 29 · see citing works
Advances in structure elucidation of small molecules using mass spectrometry
Kind, T., & Fiehn, O. (2010) · Springer eBooks · doi:10.1007/978-3-642-36303-0_7 · Cited by 33 · see citing works
Recent advancement in mass based plant metabolomics: techniques, tools, and analytical approaches
Kumar, N., Bharat, J. S., Kumar, A., & Jaitak, V. (2024) · Phytochemistry Reviews · doi:10.1007/s11101-024-10028-y · Cited by 27 · see citing works
Growing trend of CE at the omics level: The frontier of systems biology – An update
Ban, E., Park, S. H., Kang, M., Lee, H., Song, E. J., & Yoo, Y. S. (2011) · Electrophoresis · doi:10.1002/elps.201100344 · Cited by 27 · see citing works
Connecting the dots: Advances in modern metabolomics and its application in yeast system
Sailwal, M., Das, A. J., Gazara, R. K., Dasgupta, D., Bhaskar, T., Hazra, S., & Ghosh, D. (2020) · Biotechnology Advances · doi:10.1016/j.biotechadv.2020.107616 · Cited by 27 · see citing works
Do not just do it, do it right: urinary metabolomics –establishing clinically relevant baselines
Trivedi, D. K., & Iles, R. K. (2014) · Biomedical Chromatography · doi:10.1002/bmc.3219 · Cited by 27 · see citing works
Metabolic Profiling for the Detection of Bladder Cancer
Van, Q. N., Veenstra, T. D., & Issaq, H. J. (2010) · Current Urology Reports · doi:10.1007/s11934-010-0151-3 · Cited by 26 · see citing works
García-Sevillano, M. Á., García‐Barrera, T., Navarro, F., Montero, Z., & Gómez‐Ariza, J. L. (2015) · BioMetals · doi:10.1007/s10534-015-9837-9 · Cited by 25 · see citing works
- Authors
- Issaq, H. J., Van, Q. N., Waybright, T. J., Muschik, G. M., & Veenstra, T. D.
- Affiliations
- National Cancer Institute (US)
- Venue
- Journal of Separation Science
- Publisher
- Wiley
- Published
- 2009-06-30
- Volume
- 32
- Issue
- 13
- Pages
- 2183-2199
- ISSN
- 1615-9306 (ISSN-L)
- 1615-9314
- OpenAlex
- W2103773262
- Cited by
- 227
- References
- 133
- Citations by year
- 2026: 4 · 2025: 12 · 2024: 8 · 2023: 7 · 2022: 6 · 2021: 11 · 2020: 4 · 2019: 17 · 2018: 6 · 2017: 7 · 2016: 11 · 2015: 15 · 2014: 27 · 2013: 22 · 2012: 18
- FWCI
- 1.76
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Separation Science (publishedVersion)
- PubMed (publishedVersion)
- DigitalCommons-Cedarville (Cedarville University) (submittedVersion)
- Funders
- National Cancer Institute, National Institutes of Health (HHSN261200800001E)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolomics and Mass Spectrometry Studies
- Physical Sciences › Engineering › Biomedical Engineering › Advanced Chemical Sensor Technologies
- Physical Sciences › Chemistry › Analytical Chemistry › Spectroscopy and Chemometric Analyses
- Keywords
- metabolomics, multivariate analysis, pattern recognition, disease biomarkers, metabolite profiling, sample collection and storage, peak alignment, metabolite identification, NMR spectroscopy, gas chromatography-mass spectrometry, HPLC-MS, capillary electrophoresis-mass spectrometry, toxicology, plant physiology
- MeSH terms
- Chromatography, High Pressure Liquid, Humans, Gas Chromatography-Mass Spectrometry, Software, Specimen Handling, Biomarkers, Electrophoresis, Capillary, Nuclear Magnetic Resonance, Biomolecular, Biomedical Research, Metabolomics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review