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High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity
Abstract
Magnetic resonance (MR) diffusion tensor imaging (DTI) can resolve the white matter fiber orientation within a voxel provided that the fibers are strongly aligned. However, a given voxel may contain a distribution of fiber orientations due to, for example, intravoxel fiber crossing. The present study sought to test whether a geodesic, high b-value diffusion gradient sampling scheme could resolve multiple fiber orientations within a single voxel. In regions of fiber crossing the diffusion signal exhibited multiple local maxima/minima as a function of diffusion gradient orientation, indicating the presence of multiple intravoxel fiber orientations. The multimodality of the observed diffusion signal precluded the standard tensor reconstruction, so instead the diffusion signal was modeled as arising from a discrete mixture of Gaussian diffusion processes in slow exchange, and the underlying mixture of tensors was solved for using a gradient descent scheme. The multitensor reconstruction resolved multiple intravoxel fiber populations corresponding to known fiber anatomy. Ma
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“The DTI model cannot differentiate these components or even crossing fibers (Tuch et al., 2002; Jbabdi et al., 2010), which are estimated to occur in up to 90% of WM voxels at the typical dMRI resolution (Descoteaux et al., 2009; Jeurissen et al., 2013).”
From Diffusion MRI Indices and Their Relation to Cognitive Impairment in Brain Aging: The Updated Multi-protocol Approach in ADNI3 (2019) · cites this paper as Tuch et al., 2002
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Powell, J., Parkes, L. M., Kemp, G. J., Sluming, V., Barrick, T. R., & García‐Fiñana, M. (2012) · Neuroscience · doi:10.1016/j.neuroscience.2012.01.016 · Cited by 47
“Additionally in areas f tissue partial volume (where white/gray matter or WM/ SF reside in the same voxel) or of WM partial volume where two fiber systems cross the same voxel, often in ifferent orientations) the DTI model will fail (Papadakis et l., 1999; Tuch et al., 2002).”
Delouche, A., Attyé, A., Heck, O., Grand, S., Kastler, A., Lamalle, L., Renard, F., & Krainik, A. (2015) · European Journal of Radiology · doi:10.1016/j.ejrad.2015.11.004 · Cited by 54
Kuhnt, D., Bauer, M., Sommer, J. B., Merhof, D., & Nimsky, C. (2013) · PLoS ONE · doi:10.1371/journal.pone.0070973 · Cited by 48
“However, the clinical use of HARDI is limited due to larger number of diffusion-encoding gradients (ranging from 60 to 100), resulting in long acquisition times [14,15,16].”
BackgroundDiffusion tensor tractography of brainstem fibers and its application in pain
Zhang, Y., Vakhtin, A. A., Jennings, J. S., Massaband, P., Wintermark, M., Craig, P. L., Ashford, J. W., Clark, J. D., & Furst, A. J. (2020) · PLoS ONE · doi:10.1371/journal.pone.0213952 · Cited by 48
“Furthermore, the atlas was derived from data collected from healthy young adults using a high angular resolution diffusion imaging (HARDI) sequence [17], which Diffusion tensor tractography of the brainstem”
MethodPosition-orientation adaptive smoothing of diffusion weighted magnetic resonance data (POAS)
Becker, S., Tabelow, K., Voss, H. U., Anwander, A., Heidemann, R. M., & Polzehl, J. (2012) · Medical Image Analysis · doi:10.1016/j.media.2012.05.007 · Cited by 49
Global tractography with embedded anatomical priors for quantitative connectivity analysis
Lemkaddem, A., Skiöldebrand, D., Dal Palú, A., Thiran, J.-P., & Daducci, A. (2014) · Frontiers in Neurology · doi:10.3389/fneur.2014.00232 · Cited by 47
“where, the first exponential is the expression of the tensor according to the the multi-tensor model (27) with the eigenvalues of Dwm being [2.”
BackgroundAnatomical Brain Networks on the Prediction of Abnormal Brain States
Iturria‐Medina, Y. (2012) · Brain Connectivity · doi:10.1089/brain.2012.0122 · Cited by 51
“High-angular-resolution diffusion imaging (HARDI; Tuch et al., 2002a) and probabilistic fiber tractography algorithms were subsequently proposed to overcome the limitations of the diffusion tensor model and traditional deterministic fiber tractography.”
Investigating brain connectivity heritability in a twin study using diffusion imaging data
Shen, K., Rose, S., Fripp, J., McMahon, K. L., de Zubicaray, G. I., Martin, N. G., Thompson, P. M., Wright, M. J., & Salvado, O. (2014) · NeuroImage · doi:10.1016/j.neuroimage.2014.06.041 · Cited by 50
“No subject reported a history of significant head injury, neurological or psychiatric illness, substance abuse or dependence, or had a first-degree relative with a psychiatric disorder (Wright and Martin, 2004, de Zubicaray et al., 2008).”
BackgroundTravis, K. E., Adams, J. N., Ben‐Shachar, M., & Feldman, H. M. (2015) · PLoS ONE · doi:10.1371/journal.pone.0142860 · Cited by 47
“Distinguishing amongst these interpretations for FA is likely to require additional neuroimaging techniques for obtaining voxel-based estimates for the proportion of crossing fibers [123, 124] and tissue myelination [125, 126].”
BackgroundTilted‐CAIPI for highly accelerated distortion‐free EPI with point spread function (PSF) encoding
Dong, Z., Wang, F., Reese, T. G., Manhard, M. K., Bilgiç, B., Wald, L. L., Guo, H., & Setsompop, K. (2018) · Magnetic Resonance in Medicine · doi:10.1002/mrm.27413 · Cited by 47
Self-citationMetzler‐Baddeley, C., Mole, J. P., Sims, R., Fasano, F., Evans, J., Jones, D. K., Aggleton, J. P., & Baddeley, R. (2019) · Scientific Reports · doi:10.1038/s41598-018-37658-5 · Cited by 50
Chen, H., Liu, T., Zhao, Y., Zhang, T., Li, Y., Li, M., Zhang, H., Kuang, H., Guo, L., Tsien, J. Z., et al. (2015) · NeuroImage · doi:10.1016/j.neuroimage.2015.04.050 · Cited by 46
“For example, the Human Connectome Project (Sotiropoulos et al., 2013; Van Essen et al., 2012) (http://www. humanconnectome.org/) is acquiring HARDI data of 1200 healthy subjects to build a connection map of the brain; the CONNECT project (Assaf et al., 2013) has been developing tools to analyze the brain's macro- and…”
BackgroundKnöll, F., Raya, J. G., Halloran, R. O., Baete, S. H., Sigmund, E. E., Bammer, R., Block, K. T., Otazo, R., & Sodickson, D. K. (2015) · NMR in Biomedicine · doi:10.1002/nbm.3258 · Cited by 46
Sollmann, N., Negwer, C., Ille, S., Maurer, S., Hauck, T., Kirschke, J. S., Ringel, F. A., Meyer, B., & Krieg, S. M. (2016) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2016.04.002 · Cited by 46
Karmacharya, S., Gagoski, B., Ning, L., Vyas, R., Cheng, H. H., Soul, J., Newberger, J. W., Shenton, M. E., Rathi, Y., & Grant, P. E. (2018) · NeuroImage: Clinical · doi:10.1016/j.nicl.2018.04.032 · Cited by 46
“…integrity, it has several limitations: 1) it assumes the existence of only a single fiber population oriented in one particular direction (Tuch et al., 2002), and 2) it assumes Gaussian diffusion with no restriction to motion of water molecules, which is an oversimplification of the…”
Diffusion Tensor Magnetic Resonance Imaging
Gulani, V., & Sundgren, P. C. (2006) · Journal of Neuro-Ophthalmology · doi:10.1097/01.wno.0000205978.86281.3e · Cited by 45
Stroke patients' evolving symptoms assessed by tractography
Yamada, K., Ito, H., Nakamura, H., Kizu, O., Akada, W., Kubota, T., Goto, M., Konishi, J., Yoshikawa, K., Shiga, K., et al. (2004) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.20215 · Cited by 46
Multimodal MRI reveals brainstem connections that sustain wakefulness in human consciousness
Edlow, B. L., Olchanyi, M., Freeman, H. J., Li, J., Maffei, C., Snider, S. B., Zöllei, L., Iglesias, J. E., Augustinack, J. C., Bodien, Y. G., et al. (2024) · Science Translational Medicine · doi:10.1126/scitranslmed.adj4303 · Cited by 55
Liu, I., Chiu, C., Chen, C.-J., Kuo, L., Lo, Y., & Tseng, W. I. (2010) · Psychiatry Research Neuroimaging · doi:10.1016/j.pscychresns.2010.07.002 · Cited by 44
“This approach involves acquisition of a large number of diffusion-weighted images with different diffusion-encoding gradients (Hess et al., 2006; Tournier et al., 2004; Tuch, 2004; Tuch et al., 2002).”
BackgroundAutomated correction of improperly rotated diffusion gradient orientations in diffusion weighted MRI
Jeurissen, B., Leemans, A., & Sijbers, J. (2014) · Medical Image Analysis · doi:10.1016/j.media.2014.05.012 · Cited by 42
“Note that our current method uses DTI tractography, which is sub optimal in the presence of crossing fibers (Tuch et al., 2002).”
MethodSparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI
Canales-Rodríguez, E. J., Legarreta, J. H., Pizzolato, M., Rensonnet, G., Girard, G., Rafael‐Patiño, J., Baraković, M., Romascano, D., Alemán‐Gómez, Y., Raduà, J., et al. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.08.071 · Cited by 44
Rensonnet, G., Scherrer, B., Girard, G., Jankovski, A., Warfield, S. K., Macq, B. M. M., Thiran, J., & Taquet, M. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.09.076 · Cited by 46
“For instance, PGSE-based Multi-shell HARDI (Tuch et al., 2002) and CUSP protocols (Scherrer and Warfield, 2012) with gradient duration δ and separation Δ fixed across all shells have an optimalMχ ¼ 1.”
He, J., Zhang, F., Xie, G., Yao, S., Feng, Y., Bastos, D. C. A., Yogesh Rathi, A., Makris, N., Kikinis, R., Golby, A. J., et al. (2021) · Human Brain Mapping · doi:10.1002/hbm.25472 · Cited by 43
Self-citationPannek, K., Mathias, J. L., Bigler, E. D., Brown, G. C., Taylor, J. D., & Rose, S. (2010) · NeuroImage · doi:10.1016/j.neuroimage.2010.01.020 · Cited by 43
“High angular resolution diffusion imaging (HARDI), which was first proposed by Tuch et al. (2002) to help resolve the issue of extracting complexneural networks, has been shown toprovide a robustmethod for subdividing the CC (into 28 functional regions) based on the cytoarchitectural parcellation…”
Koay, C. G. (2011) · Journal of Computational Science · doi:10.1016/j.jocs.2011.06.007 · Cited by 45
Fibertract segmentation in position orientation space from high angular resolution diffusion MRI
Hagmann, P., Jonasson, L., Deffieux, T., Meuli, R. A., Thiran, J., & Wedeen, V. J. (2006) · NeuroImage · doi:10.1016/j.neuroimage.2006.02.043 · Cited by 44
“Recently, the advent of diffusion techniques with better angular resolution motivated new parametric representations (Tuch et al., 2002) that seem in many respect unsatisfactory as fairly heavy in terms of computation and limited in the spectrum of possible representations.”
BackgroundSelf-citationMulti-Diffusion-Tensor Fitting via Spherical Deconvolution: A Unifying Framework
Schultz, T., Westin, C., & Kindlmann, G. (2010) · Lecture notes in computer science · doi:10.1007/978-3-642-15705-9_82 · Cited by 44
“Most authors constrain the isotropic part, for example by assuming equal eigenvalues on all Di [3, 14, 5], but some prefer to fix the fi instead [7, 15].”
BackgroundMethodInfluentialCalabrese, E., Badea, A., Coe, C. L., Lubach, G. R., Styner, M. A., & Johnson, G. A. (2014) · Human Brain Mapping · doi:10.1002/hbm.22578 · Cited by 39
“Increased spatial sampling can reduce intravoxel fiber complexity, while increased q-space sampling can resolve intravoxel fiber complexity [Kim et al., 2006; Tuch et al., 2002].”
BackgroundGlaucoma classification based on visual pathway analysis using diffusion tensor imaging
El-Rafei, A., Engelhorn, T., Wärntges, S., Dörfler, A., Joachim Hornegger, A., & Michelson, G. (2013) · Magnetic Resonance Imaging · doi:10.1016/j.mri.2013.01.001 · Cited by 44
Shahid, S. S., Wen, P. P., & Ahfock, T. (2013) · Bioelectromagnetics · doi:10.1002/bem.21814 · Cited by 44
“Diffusion data may be acquired using high-resolution diffusion imaging (HARDI) scheme [Tuch et al., 2002] or diffusion spectrum imaging (DSI) [Wedeen et al., 2008].”
MethodPasternak, O., Assaf, Y., Intrator, N., & Sochen, N. (2008) · Magnetic Resonance Imaging · doi:10.1016/j.mri.2008.01.006 · Cited by 44
“Previous attempts to stabilize the fitting process used geometric constraints such as fixed eigenvalues and multiple restarts [25], or extraction of the fiber orientation with the assumption of two cylindrical symmetric tensors that lie in the same plane [26].”
MethodDirect Estimation of Fiber Orientations Using Deep Learning in Diffusion Imaging
Koppers, S., & Merhof, D. (2016) · Lecture notes in computer science · doi:10.1007/978-3-319-47157-0_7 · Cited by 43
“Since [3] showed that DTI is neither capable of estimating kissing nor crossing fibers, various approaches have been proposed [9] that are able to detect multiple of fiber directions in a voxel.”
BackgroundPerformance of unscented Kalman filter tractography in edema: Analysis of the two-tensor model
Liao, R., Ning, L., Chen, Z., Rigolo, L., Gong, S., Pasternak, O., Golby, A. J., Yogesh Rathi, A., & O’Donnell, L. J. (2017) · NeuroImage Clinical · doi:10.1016/j.nicl.2017.06.027 · Cited by 44
“Two-tensor models have been proposed for addressing fiber crossing (Tuch et al., 2002; Peled et al., 2006; Pasternak et al., 2008; Qazi et al., 2009) and for removing cerebrospinal fluid (CSF) contamination (Pierpaoli and Jones, 2004; Pasternak et al., 2009).”
BackgroundInfluentialGuan, X., Huang, P., Zeng, Q., Liu, C., Wei, H., Xuan, M., Gu, Q., Xu, X., Wang, N., Yu, X., et al. (2018) · Brain Imaging and Behavior · doi:10.1007/s11682-018-9842-z · Cited by 44
Ex vivo fetal brain MRI: Recent advances, challenges, and future directions
Vasung, L., Charvet, C. J., Shiohama, T., Gagoski, B. A., Levman, J. E. D., & Takahashi, E. (2019) · NeuroImage · doi:10.1016/j.neuroimage.2019.03.034 · Cited by 43
Manifold-valued image processing with SPD matrices
Pennec, X. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-814725-2.00010-8 · Cited by 44
Fast and Accurate Reconstruction of HARDI Data Using Compressed Sensing
Michailovich, O., & Yogesh Rathi, A. (2010) · Lecture notes in computer science · doi:10.1007/978-3-642-15705-9_74 · Cited by 44
“Unfortunately, the performance of DTI is known to deteriorate considerably at the spatial locations where neural tracts cross, touch upon each other, or diverge [6],[7],[8],[9].”
BackgroundMethodA primer on diffusion tensor imaging of anatomical substructures
DaSilva, A. F. M., Tuch, D. S., Wiegell, M. R., & Hadjikhani, N. K. (2003) · Neurosurgical FOCUS · doi:10.3171/foc.2003.15.1.4 · Cited by 43
“13,30 Another restriction of DT imaging is sensitivity to motion, including pulsatile cardiac and respiratory motion.”
BackgroundSelf-citationTractography for arteriovenous malformations near the sensorimotor cortices.
Yamada, K., Kizu, O., Ito, H., Kubota, T., Akada, W., Goto, M., Takada, A., Konishi, J., Sasajima, H., Mineura, K., et al. (2005) · PubMed Central · Cited by 44
Three-Dimensional Interactive and Stereotactic Human Brain Atlas of White Matter Tracts
Nowinski, W. L., Chua, B. C., Yang, G. L., & Guo, Q. (2011) · Neuroinformatics · doi:10.1007/s12021-011-9118-x · Cited by 46
“2005; 2008), High Angular Resolution Diffusion Image (HARDI) (Tuch et al. 2002), and Q-ball (Tuch 2004).”
BackgroundMethodInfluentialComplex geometric models of diffusion and relaxation in healthy and damaged white matter
Landman, B. A., Farrell, J. A. D., Smith, S. A., Reich, D. S., Calabresi, P. A., & van Zijl, P. C. M. (2009) · NMR in Biomedicine · doi:10.1002/nbm.1437 · Cited by 43
Single- and Multiple-Shell Uniform Sampling Schemes for Diffusion MRI Using Spherical Codes
Cheng, J., Shen, D. G., Yap, P., & Basser, P. J. (2017) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2017.2756072 · Cited by 43
“Some pioneer works of HARDI uses finer tessellation gradient table (i.e., larger number of samples with smaller separation angles) to investigate the non-Gaussianity of DWI signals [2], [31].”
BackgroundMethodInfluentialImproved Framework for Tractography Reconstruction of the Optic Radiation
Martínez‐Heras, E., Varriano, F., Prčkovska, V., Laredo, C., Andorrà, M., Martínez‐Lapiscina, E. H., Calvo, A., Lampert, E. J., Villoslada, P., Saiz, A., et al. (2015) · PLoS ONE · doi:10.1371/journal.pone.0137064 · Cited by 43
Liao, C., Chen, Y., Cao, X., Chen, S., He, H., Mani, M., Jacob, M., Magnotta, V. A., & Zhong, J. (2016) · Magnetic Resonance in Medicine · doi:10.1002/mrm.26199 · Cited by 43
A probabilistic atlas of fiber crossings for variability reduction of anisotropy measures
Volz, L. J., Cieslak, M., & Grafton, S. T. (2017) · Brain Structure and Function · doi:10.1007/s00429-017-1508-x · Cited by 45
A comparison of three fiber tract delineation methods and their impact on white matter analysis
Sydnor, V. J., Rivas-Grajales, A. M., Lyall, A. E., Zhang, F., Bouix, S., Karmacharya, S., Shenton, M. E., Westin, C.-F., Makris, N., Wassermann, D., et al. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.05.044 · Cited by 43
“Correspondingly, the use of high angular resolution diffusionweighted imaging (Tuch et al., 2002) based tractography, which has been shown to perform similarly to the algorithm we employed (Baumgartner et al.”
Self-citationJin, Z., Bao, Y., Wang, Y., Li, Z., Zheng, X., Long, S., & Wang, Y. (2019) · Surgical and Radiologic Anatomy · doi:10.1007/s00276-019-02264-1 · Cited by 43
Liu, C., Bammer, R., & Moseley, M. E. (2003) · Israel Journal of Chemistry · doi:10.1560/hb5h-6xbr-1aw1-lnx9 · Cited by 43
Cheng, J., Rachid Deriche, B., Jiang, T., Shen, D. G., & Yap, P. (2014) · NeuroImage · doi:10.1016/j.neuroimage.2014.07.062 · Cited by 42
“In view of this, many High Angular Resolution Diffusion Imaging (HARDI) (Tuch et al., 2002)methods have been developed in recent years to characterize non-Gaussian diffusion and compute quantities such as the Ensemble Average Propagator (EAP) (Wedeen et al.”
Figley, T. D., Bhullar, N., Courtney, S. M., & Figley, C. R. (2015) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2015.00585 · Cited by 47
“However, one recent study comparing tractography outcomes resulting from different techniques (i.e., DTI, HARDI, and DSI from the same subjects) suggested: (1) that there is likely only a 15–20% difference between connectomes generated using the different acquisition and image reconstruction schemes, and (2) that whil…”
MethodInfluentialVariations in the neurobiology of reading in children and adolescents born full term and preterm
Travis, K. E., Ben‐Shachar, M., Myall, N. J., & Feldman, H. M. (2016) · NeuroImage Clinical · doi:10.1016/j.nicl.2016.04.003 · Cited by 43
“Techniques for quantifying the amount of crossing fibers (Tuch et al., 2002; Wedeen et al., 2008) will likely prove important for determining which associations may be driven by the amount of crossing fibers (De Santis et al.”
Joint RElaxation-Diffusion Imaging Moments to Probe Neurite Microstructure
Ning, L., Gagoski, B. A., Szczepankiewicz, F., Westin, C., & Yogesh Rathi, A. (2019) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2019.2933982 · Cited by 42
“It also includes the standard multi-exponential (and multi-compartmental) models [16]–[18] as special cases.”
Double diffusion encoding and applications for biomedical imaging
Henriques, R. N., Palombo, M., Jespersen, S. N., Shemesh, N., Lundell, H., & Ianuș, A. (2020) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2020.108989 · Cited by 46
“…tissue micro-structure beyond the bulk measures provided by diffusion tensor imaging (DTI), usually employ SDE sequences with multiple gradient strengths (Cohen and Assaf 2002, Alexander et al. 2017, Ghosh et al., 2018, Novikov et al., 2019) and/or a good angular resolution (Tuch et al. 2002).”
Evaluation of the accuracy and angular resolution of q-ball imaging
Cho, K.-H., Yeh, C., Tournier, J., Chao, Y., Chen, J., & Lin, C. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.03.053 · Cited by 45
“Q-ball imaging (QBI), one of the HARDI methods, directly derives the diffusion orientation distribution function (ODF) from diffusion images using the Funk–Radon transform (FRT).”
MethodInfluentialSingularities in diffusion tensor fields and their relevance in white matter fiber tractography
Barrick, T. R., & Clark, C. A. (2004) · NeuroImage · doi:10.1016/j.neuroimage.2004.02.001 · Cited by 44
“This can be achieved in practice through the acquisition of high angular resolution diffusion data by sensitizing images to many diffusion directions (Alexander et al., 2002; Frank, 2001; Tuch et al., 2002).”
BackgroundPeters, J. M., Taquet, M., Prohl, A. K., Scherrer, B., van Eeghen, A. M., Prabhu, S. P., Şahin, M., & Warfield, S. K. (2013) · Future Neurology · doi:10.2217/fnl.13.37 · Cited by 43
“One natural generalization of DTI is the development of multitensor models (also called multi-fiber and -fascicle models) [106].”
BackgroundFRATS: Functional Regression Analysis of DTI Tract Statistics
Hongtu Zhu, B., Styner, M. A., Tang, N., Liu, Z., Lin, W., & Gilmore, J. H. (2010) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2010.2040625 · Cited by 41
“apply FRATS to water diffusion related parameters obtained from HARDI [42]–[44].”
MethodDiffusion tensor imaging of anterior commissural fibers in patients with schizophrenia
Choi, H., Kubicki, M. R., Whitford, T. J., Alvarado, J. L., Terry, D. P., Niznikiewicz, M. A., McCarley, R. W., Kwon, J. S., & Shenton, M. E. (2011) · Schizophrenia Research · doi:10.1016/j.schres.2011.04.016 · Cited by 41
“We note, however, that a diffusion tensor model is not always adequate, especially in voxels containing complex crossing tracts from differently oriented fibers (Alexander et al., 2002; Tuch et al., 2002).”
BackgroundFunctional Neuroimaging: Fundamental Principles and Clinical Applications
Khanna, N., Altmeyer, W. B., Zhuo, J., & Steven, A. J. (2015) · The Neuroradiology Journal · doi:10.1177/1971400915576311 · Cited by 43
In, M., Posnansky, O. P., & Speck, O. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.01.008 · Cited by 41
“However, this limits the opportunity for acquisition of images with a high number of diffusion directions, which is often preferred as a way to characterize the underlying fiber connections in the presence of multiple intravoxel fiber orientations (Tuch et al., 2002).”
BackgroundFigley, T. D., Moghadam, B. M., Bhullar, N., Kornelsen, J., Courtney, S. M., & Figley, C. R. (2017) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2017.00306 · Cited by 40
“Although the aforementioned limitations apply to all current diffusion MRI approaches—including high angular resolution diffusion imaging (HARDI; Tuch et al., 2002), Q-ball imaging (Tuch, 2004), and diffusion spectrum imaging (DSI; Wedeen et al., 2005)—we also note some additional limitations of…”
BackgroundJacquesson, T., Cotton, F., Attyé, A., Zaouche, S., Tringali, S., Bosc, J., Robinson, P., Jouanneau, E., & Frindel, C. (2018) · Neurosurgery · doi:10.1093/neuros/nyy538 · Cited by 41
Sarcopenia and Neuroscience: Learning to Communicate
Clark, B. C., & Carson, R. G. (2021) · The Journals of Gerontology Series A · doi:10.1093/gerona/glab098 · Cited by 42
Scherrer, B., & Warfield, S. K. (2010) · IEEE International Symposium on Biomedical Imaging (ISBI) · doi:10.1109/isbi.2010.5490257 · Cited by 41
“In the literature, a number of approaches fit a multi-tensor model with only one b-value [3, 6, 4].”
BackgroundMethodInfluentialKamali, A., Kramer, L. A., & Hasan, K. M. (2010) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2010.06.026 · Cited by 42
Corticospinal Tracts by Diffusion Tensor Tractography in Patients With Arteriovenous Malformations
Itoh, D., Aoki, S., Maruyama, K., Masutani, Y., Mori, H., Masumoto, T., Abe, O., Hayashi, N., Okubo, T., & Ohtomo, K. (2006) · Journal of Computer Assisted Tomography · doi:10.1097/00004728-200607000-00011 · Cited by 41
“Crossing fiber is a problem which is discussed elsewhere.(19) We are not sure if DTT-CSTs can be tracked in cases with diffuse AVM.”
BackgroundLiu, T.-T., Gao, F.-S., Zheng, W., You, Y., Zhao, Z.-Y., Lv, Y., Chen, W., Zhang, H.-X., Ji, C., & Wu, D. (2021) · NeuroImage · doi:10.1016/j.neuroimage.2021.118465 · Cited by 37
RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI
Sotiropoulos, S. N., Jbabdi, S., Andersson, J., Woolrich, M. W., Uǧurbil, K., & Behrens, T. E. J. (2013) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2012.2231873 · Cited by 40
“Parametric [11]–[14] or nonparametric approaches [6], [15]–[19] exist that either estimate directly the dominant fiber orientations within each voxel or reconstruct orientation distribution functions (ODFs) on the sphere.”
BackgroundDeconvolution in diffusion spectrum imaging
Canales-Rodríguez, E. J., Iturria‐Medina, Y., Alemán‐Gómez, Y., & Melie‐García, L. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.11.066 · Cited by 40
“…developed (Alexander, 2005; Anderson, 2005; Behrens et al., 2007; Canales-Rodríguez et al., 2009; Descoteaux et al., 2007; Liu et al., 2004; Melie-García et al., 2008; Özarslan et al., 2006; Ramírez-Manzanares et al., 2007; Tournier et al., 2004; Tuch et al., 2002; Tuch, 2004; Wedeen et al., 2005).”
MethodInfluentialStructural connectivity of visuotopic intraparietal sulcus
Bray, S., Arnold, A. E. G. F., Iaria, G., & MacQUEEN, G. M. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.05.080 · Cited by 42
“A higher resolution diffusion protocol (Tuch et al., 2002) could enable a more detailed investigation into the homogeneity of connections within IPS regions.”
Yamada, M., Momoshima, S., Masutani, Y., Fujiyoshi, K., Abe, O., Nakamura, M., Aoki, S., Tamaoki, N., & Okano, H. (2008) · Radiology · doi:10.1148/radiol.2493072141 · Cited by 40
A New Method to Derive White Matter Conductivity From Diffusion Tensor MRI
Wang, K., Zhu, S., Mueller, B. A., Lim, K. O., Liu, Z., & He, B. (2008) · IEEE Transactions on Biomedical Engineering · doi:10.1109/tbme.2008.923159 · Cited by 40
“the fact that the intravoxel orientational heterogeneity is considerable under the typical voxel size of DT-MRI [15]–[17], [23].”
BackgroundDiffusion MRI Signal Augmentation: From Single Shell to Multi Shell with Deep Learning
Koppers, S., Haarburger, C., & Merhof, D. (2017) · Mathematics and visualization · doi:10.1007/978-3-319-54130-3_5 · Cited by 41
Acer, N., Bastepe-Gray, S. E., Sağıroğlu, A., Gümüş, K., Değirmencioğlu, L., Zararsız, G., & Özıç, M. Ü. (2017) · Journal of Chemical Neuroanatomy · doi:10.1016/j.jchemneu.2017.11.003 · Cited by 41
Messaritaki, E., Dimitriadis, S. I., & Jones, D. K. (2019) · NeuroImage · doi:10.1016/j.neuroimage.2019.05.052 · Cited by 39
“On the other hand, b -values of under 1500 s/mm 2 can be problematic when it comes to resolving crossing fi bers with CSD tractography algorithms (Tuch et al., 2002; Tournier et al., 2004, 2008; Cho et al., 2008), which is important given the prevalence of such fi bers in the human brain (Jeurissen…”
The role of diffusion tractography in refining glial tumor resection
Vanderweyen, D., Theaud, G., Sidhu, J., Rheault, F., Sarubbo, S., Descoteaux, M., & Fortin, D. (2020) · Brain Structure and Function · doi:10.1007/s00429-020-02056-z · Cited by 41
Neural Tractography Using an Unscented Kalman Filter
Malcolm, J. G., Shenton, M. E., & Yogesh Rathi, A. (2009) · Lecture notes in computer science · doi:10.1007/978-3-642-02498-6_11 · Cited by 40
“Several other studies have also found two tensors to be sufficient [6, 7, 38, 8].”
BackgroundMethodInfluentialBick, A. S., Mayer, A., & Levin, N. (2011) · Journal of the Neurological Sciences · doi:10.1016/j.jns.2011.07.040 · Cited by 39
“High angular resolution diffusion imaging (HARDI) has been proposed for this purpose [62].”
BackgroundA regularized two‐tensor model fit to low angular resolution diffusion images using basis directions
Sotiropoulos, S. N., Bai, L., Morgan, P. S., Auer, D. P., Constantinescu, C. S., & Tench, C. R. (2008) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.21380 · Cited by 39
Alhamud, A., Taylor, P. A., van der Kouwe, A. J. W., & Meintjes, E. M. (2015) · NeuroImage · doi:10.1016/j.neuroimage.2015.11.022 · Cited by 40
“, 2003) or a longer diffusion table, such as in q-space imaging (Assaf and Cohen, 1999), HARDI (Tuch et al., 2002), and diffusion spectrum imaging (Wedeen et al.”
InfluentialSu, E. R., & Bell, M. J. (2015) · Frontiers in neuroscience · doi:10.1201/b18959-4 · Cited by 40
Cross‐sectional and longitudinal multimodal structural imaging in prodromal Huntington's disease
Harrington, D. L., Long, J. D., Durgerian, S., Mourany, L., Koenig, K. A., Bonner‐Jackson, A., Paulsen, J. S., for the PREDICT‐HD Investigators of the Huntington Study Group, & Rao, S. M. (2016) · Movement Disorders · doi:10.1002/mds.26803 · Cited by 39
“04/2530 ms/10 8; matrix 5 256 3 240; receiver bandwidth 5 220 kHz) and high angular resolution diffusion images (twicerefocused spin echo diffusion weighting, single-shot two-dimesional echo planar imaging readout, 2 mm isotropic resolution, 256 mm 3 256 mm field of view, 128 3 128 matrix, 50 2-mm thick slices, echo t…”
BackgroundWhite matter basis for the hub-and-spoke semantic representation: evidence from semantic dementia
Chen, Y., Huang, L., Chen, K., Ding, J., Zhang, Y., Yang, Q., Lv, Y., Han, Z., & Guo, Q. (2020) · Brain · doi:10.1093/brain/awaa057 · Cited by 40
“More gradient directions ( 4 60), in addition to more complex acquisition profiles (e.g. HARDI; Tuch et al. , 2002), are required in future studies.”
BackgroundJaermann, T., Zanche, N. D., Stämpfli, P., Pruessmann, K. P., Valavanis, A., Boesiger, P., & Kollias, S. (2007) · American Journal of Neuroradiology · doi:10.3174/ajnr.a0742 · Cited by 38
“Resolving intravoxel heterogeneity can be achieved either by increasing the spatial resolution, or by developing alternative strategies (eg, modeling of the diffusion process in the neural tissue) that are able to resolve multiple intravoxel fiber directions.(7,8) A few studies so far have described distinct anisotrop…”
MethodA filtered approach to neural tractography using the Watson directional function
Malcolm, J. G., Michailovich, O., Sylvain Bouix, A., Westin, C., Shenton, M. E., & Yogesh Rathi, A. (2009) · Medical Image Analysis · doi:10.1016/j.media.2009.10.003 · Cited by 38
“# For voxels containing a mixed diffusion pattern, a general weighted formulation may be written as, where s 0 is a baseline signal intensity, b is an acquisition-specific constant, w j are convex weights, and D j is a tensor describing a diffusion pattern (Tuch et al., 2002, 2005).”
BackgroundMethodInfluentialAxon Diameter Mapping in Crossing Fibers with Diffusion MRI
Zhang, H. G., Dyrby, T. B., & Alexander, D. C. (2011) · Lecture notes in computer science · doi:10.1007/978-3-642-23629-7_11 · Cited by 38
“Since the earliest breakthroughs in crossing fiber resolution [10,11], major progress has produced very effective modern techniques (See [12] for a review).”
BackgroundCortical fibers orientation mapping using in-vivo whole brain 7 T diffusion MRI
Gülban, Ö. F., Martino, F. D., Vu, A. T., Yacoub, E. S., Uǧurbil, K., & Lenglet, C. (2018) · NeuroImage · doi:10.1016/j.neuroimage.2018.05.010 · Cited by 39
“, 1994), high angular resolution diffusion imaging (Tuch et al., 2002), diffusion spectrum imaging (Wedeen et al.”
Subtle white matter alterations in schizophrenia identified with a new measure of fiber density
Stämpfli, P., Sommer, S., Manoliu, A., Burrer, A., Schmidt, A., Herdener, M., Seifritz, E., Kaiser, S., & Kirschner, M. (2019) · Scientific Reports · doi:10.1038/s41598-019-40070-2 · Cited by 40
Wu, W., McAnulty, G. B., Hamoda, H. M., Sarill, K., Karmacharya, S., Gagoski, B. A., Ning, L., Grant, P. E., Shenton, M. E., Waber, D. P., et al. (2019) · Brain Imaging and Behavior · doi:10.1007/s11682-019-00108-5 · Cited by 40
Self-citationAdaptive Kernels for Multi-fiber Reconstruction
Barmpoutis, A., Jian, B., & Vemuri, B. C. (2009) · Lecture notes in computer science · doi:10.1007/978-3-642-02498-6_28 · Cited by 38
“The approach in [6] assumes the signal in each voxel can be split into a weighted sum of contributions from different diffusion tensors individually.”
BackgroundLearning a Reliable Estimate of the Number of Fiber Directions in Diffusion MRI
Schultz, T. (2012) · Lecture notes in computer science · doi:10.1007/978-3-642-33454-2_61 · Cited by 38
“When analyzing a diffusion MRI signal that arises as an average over n fiber compartments with principal directions vi and relative weights wi, two or more of the vi may be so close to collinearity that, given noisy measurements with limited angular and spectral resolution, it becomes impossible to separate them with…”
BackgroundMethodDTI Parameter Optimisation for Acquisition at 1.5T: SNR Analysis and Clinical Application
Laganà, M. M., Rovaris, M., Ceccarelli, A., Venturelli, C., Marini, S., & Baselli, G. (2010) · Computational Intelligence and Neuroscience · doi:10.1155/2010/254032 · Cited by 38
“Several studies have been performed to reduce the errors on fiber tracking [30–33], but these methodologies are still being developed, none are used routinely, and most of them are time consuming and require strong computational power.”
BackgroundInformed constrained spherical deconvolution (iCSD)
Roine, T., Jeurissen, B., Perrone, D., Aelterman, J., Philips, W. R., Leemans, A., & Sijbers, J. (2015) · Medical Image Analysis · doi:10.1016/j.media.2015.01.001 · Cited by 37
“To overcome this, high angular resolution diffusion imaging (HARDI) (Tuch et al., 2002; Jansons and Alexander, 2003; Tournier et al., 2004; Tuch, 2004; Anderson, 2005; Alexander, 2005; Hosey et al., 2005; Tournier et al., 2007; Dell’Acqua et al., 2007; Descoteaux et al., 2007; Behrens et al., 2007;…”
InfluentialTrojsi, F., Corbo, D., Caiazzo, G., Piccirillo, G., Monsurrò, M. R., Cirillo, S., Esposito, F., & Tedeschi, G. (2013) · Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration · doi:10.3109/21678421.2013.785569 · Cited by 37
Diffusion Tensor MRI of the Heart – In Vivo Imaging of Myocardial Fiber Architecture
Froeling, M., Strijkers, G. J., Nederveen, A. J., Chamuleau, S. A. J., & Luijten, P. R. (2014) · Current Cardiovascular Imaging Reports · doi:10.1007/s12410-014-9276-y · Cited by 37
Rodrigues, N. B., Mithani, K., Meng, Y., Lipsman, N., & Hamani, C. (2018) · Brain Sciences · doi:10.3390/brainsci8020023 · Cited by 40
“resolution diffusion imaging (HARDI) [11], Q-Ball imaging (QBI) [12], hybrid diffusion imaging (HYDI) [13], diffusion spectrum imaging (DSI) [14], spherical deconvolutional models [15], composite”
BackgroundMethodWhole mouse brain connectomics
Johnson, G. A., Wang, N., Anderson, R. J., Chen, M., Cofer, G. P., Gee, J. C., Pratson, F., Tustison, N. J., & WHITE, L. E. (2018) · The Journal of Comparative Neurology · doi:10.1002/cne.24560 · Cited by 36
“…have probed the question of what is “sufficient” which is in turn dependent on the algorithm, signal to noise of the data and spatial resolution (Jones, 2004; Jones & Cercignani, 2010; Jones, Knösche, & Turner, 2013; Tournier, Calamante, & Connelly, 2013; Tuch et al., 2002; Vos et al., 2016).”
BackgroundMaffei, C., Sarubbo, S., & Jovicich, J. (2019) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2019.00027 · Cited by 41
“Resolving the fiber crossing is a wellknown challenge in dMRI (Tuch et al., 2002; Dell’Acqua and Catani, 2012; Jeurissen et al., 2013).”
BackgroundHodgetts, C. J., Shine, J. P., Williams, H., Postans, M., Sims, R., Williams, J. H., Lawrence, A. D., & Graham, K. S. (2018) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2018.08.026 · Cited by 40
Frontrunner in Translation: Progressive Supranuclear Palsy
Shoeibi, A., Olfati, N., & Litvan, I. (2019) · Frontiers in Neurology · doi:10.3389/fneur.2019.01125 · Cited by 39
Metadata
- Authors
- Tuch, D. S., Reese, T. G., Wiegell, M. R., Makris, N., Belliveau, J. W., & Wedeen, V. J.
- Affiliations
- Massachusetts General Hospital (US)
- Corresponding author
- Wedeen, Van J.
- Venue
- Magnetic Resonance in Medicine
- Publisher
- Wiley
- Published
- 2002-09-26
- Volume
- 48
- Issue
- 4
- Pages
- 577-582
- ISSN
- 0740-3194 (ISSN-L)
- 1522-2594
- OpenAlex
- W2080198834
- Cited by
- 1,548
- References
- 27
- Citations by year
- 2026: 20 · 2025: 43 · 2024: 39 · 2023: 52 · 2022: 59 · 2021: 65 · 2020: 65 · 2019: 82 · 2018: 76 · 2017: 84 · 2016: 84 · 2015: 115 · 2014: 93 · 2013: 95 · 2012: 79
- FWCI
- 23.23
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Magnetic Resonance in Medicine (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Sol Goldman Charitable Trust
- Topics
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced MRI Techniques and Applications
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Keywords
- high angular resolution diffusion imaging
- MeSH terms
- Brain, Computer Simulation, Humans, Image Processing, Computer-Assisted, Male, Nerve Fibers, Anisotropy, Diffusion Magnetic Resonance Imaging
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