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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions
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Cites
PROCHECK: a program to check the stereochemical quality of protein structures
Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M. (1993) · Journal of Applied Crystallography · doi:10.1107/s0021889892009944 · Cited by 24,581
A new approach to protein fold recognition
Jones, D. T., Taylort, W. R., & Thornton, J. M. (1992) · Nature · doi:10.1038/358086a0 · Cited by 1,221
LINUS: a hierarchic procedure to predict the fold of a protein
Srinivasan, R., & Rose, G. D. (1995) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.340220202 · Cited by 266 · cited 3×
“Previous ab initio folding studies have focused on either small proteins (Bowie & Eisenberg, 1994; Wilson & Doniach, 1989; Yue & Dill, 1996; Kolinski & Skolnick, 1994; Monge et al., 1994) or protein fragments (Srinivasan & Rose, 1995; Avbelj & Moult, 1995).”
BackgroundMethodComparison of systematic search and database methods for constructing segments of protein structure
Fidelis, K., Stern, P. S., Bacon, D., & Moult, J. (1994) · "Protein Engineering, Design and Selection" · doi:10.1093/protein/7.8.953 · Cited by 126 · cited 2×
“Fidelis et al. (1994) suggested that building structures from fragments was likely to be unsuccessful because of the structural divergence of local fragments and the weakness of local sequence-structural correlation.”
Background
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Leaver-Fay (2011) · doi:10.1016/b978-0-12-381270-4.00019-6 · Cited by 1,904
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
Alford, R. F., Leaver-Fay, A., Jeliazkov, J. R., O’Meara, M. J., DiMaio, F. P., Park, H., Shapovalov, M. V., Renfrew, P. D., Mulligan, V. K., Kappel, K., et al. (2017) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.7b00125 · Cited by 1,532
Self-citationThe coming of age of de novo protein design
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Metadata
- Authors
- Simons, K. T., Kooperberg, C., Huang, E., & Baker, D.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1997-04
- Volume
- 268
- Issue
- 1
- Pages
- 209-225
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2154106236
- Cited by
- 1,396
- References
- 4
- FWCI
- 4.50
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
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