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Hydrogen bonds with π-acceptors in proteins: frequencies and role in stabilizing local 3D structures11Edited by R. Huber

Steiner, Thomas, Koellner, Gertraud·2001·Journal of Molecular Biology

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Research works printed but not linked: 68

  1. Acharya, 1995, Crystal structure of bovine angiogenin at 1.5 Å resolution, Proc. Natl Acad. Sci USA, 92, 2949, 10.1073/pnas.92.7.2949 · DOI
  2. Andersson, 1996, Large structures at high resolution, J. Mol. Biol, 259, 160, 10.1006/jmbi.1996.0310 · DOI · Paper page
  3. Armstrong, 1993, The (i, i+4) Phe-His interaction studied in an alanine-based α-helix, J. Mol. Biol, 230, 284, 10.1006/jmbi.1993.1142 · DOI
  4. Auffinger, 1996, H-bond stability in the tRNAAsp anticodon hairpin. 3ns of multiple molecular dynamics simulation, Biophys. J, 71, 940, 10.1016/S0006-3495(96)79298-6 · DOI
  5. Baker, 1984, Hydrogen bonding in globular proteins, Prog. Biophys. Mol. Biol, 44, 97, 10.1016/0079-6107(84)90007-5 · DOI · Paper page
  6. Benini, 2000, The complex of Bacillus pasteurii urease with acetohydroxamate anion from X-ray data at 1.55 Å resolution, J. Biol. Inorg. Chem, 5, 110, 10.1007/s007750050014 · doi:10.1007/s007750050014
  7. Berman, 2000, The Protein Data Bank, Nucl. Acid Res, 28, 235, 10.1093/nar/28.1.235 · DOI · Paper page
  8. Blundell, 1981, X-ray analysis (1.4 Å resolution) of avian pancreatic polypeptide. Small globular protein hormone, Proc. Natl Acad. Sci. USA, 78, 4175, 10.1073/pnas.78.7.4175 · DOI · Paper page
  9. Burley, 1986, Amino-aromatic interactions in proteins, FEBS Letters, 203, 139, 10.1016/0014-5793(86)80730-X · DOI · Paper page
  10. Burley, 1988, Weakly polar interactions in proteins, Advan. Protein Chem, 39, 125, 10.1016/S0065-3233(08)60376-9 · DOI · Paper page
  11. Chen, 1998, Structure of bovine pancreatic cholesterol esterase at 1.6 Å, Biochemistry, 37, 5107, 10.1021/bi972989g · DOI
  12. Clausen, 1998, Crystal structure of Eschericia coli cystathionine γ-synthetase at 1.5 Å resolution, EMBO J, 17, 6827, 10.1093/emboj/17.23.6827 · DOI
  13. 1994, The CCP4 suite, Acta Crystallog. sect. D, 50, 760, 10.1107/S0907444994003112 · DOI · Paper page
  14. Deacon, 1997, The structure of concanavalin A and its bound solvent determined with small-molecule accuracy at 0.94 Å resolution, J. Chem. Soc. Faraday Trans, 93, 4305, 10.1039/a704140c · DOI
  15. Derewenda, 1995, The occurrence of C—H⋯O hydrogen bonds in proteins, J. Mol. Biol, 252, 248, 10.1006/jmbi.1995.0492 · DOI · Paper page
  16. Engh, 1996, Enzyme flexibility, solvent and “weak” interactions characterize thrombin-ligand interactions, Structure, 4, 1353, 10.1016/S0969-2126(96)00142-6 · DOI
  17. Fabiola, 1997, C—H⋯O hydrogen bonds in β-sheets, Acta Crystallog. sect. D, 53, 316, 10.1107/S0907444997000383 · DOI
  18. Flocco, 1994, Planar stacking interactions of arginine and aromatic side-chains in proteins, J. Mol. Biol, 235, 709, 10.1006/jmbi.1994.1022 · DOI · Paper page
  19. Gajiwala, 2000, Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding, Nature, 403, 916, 10.1038/35002634 · DOI · Paper page
  20. Ghosh, 1999, Three-centre C—H⋯O hydrogen bonds in the DNA minor groove, Acta Crystallog. sect. D, 55, 2005, 10.1107/S0907444999012858 · doi:10.1107/s0907444999012858
  21. Gliubich, 1998, Structure of sulfur-substituted rhodanese at 1.36 Å resolution, Acta Crystallog. sect. D, 54, 481, 10.1107/S090744499701216X · DOI
  22. Hasson, 1998, The crystal structure of benzoylformate decarboxylase at 1.6 Å resolution, Biochemistry, 37, 9918, 10.1021/bi973047e · DOI
  23. Hendriksen, 1999, The structures of the horseradish peroxidase C-ferulic acid complex and the ternary complex with cynide suggest how peroxidases oxidize small phenolic substrates, J. Biol. Chem, 274, 35005, 10.1074/jbc.274.49.35005 · DOI · Paper page
  24. Hirshberg, 1997, The crystal structure of human rac1, a member of the rho-family complexed with a GTP analogue, Nature Struct. Biol, 4, 147, 10.1038/nsb0297-147 · DOI
  25. Holland, 1992, Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis, Biochemistry, 31, 11310, 10.1021/bi00161a008 · DOI
  26. Hutchinson, 1996, Promotif, Protein Sci, 5
  27. Koellner, 2000, Active-site and buried water molecules in crystal structures of acetylcholinesterase from Torpedo californica, J. Mol. Biol, 296, 713, 10.1006/jmbi.1999.3468 · DOI
  28. Kraulis, 1991, MOLSCRIPT, J. Appl. Crystallog, 24, 946, 10.1107/S0021889891004399 · DOI · Paper page
  29. Kryger, 1999, Structure of acetylcholinesterase complexed with E2020 (Aricept®), Structure, 7, 297, 10.1016/S0969-2126(99)80040-9 · DOI · Paper page
  30. Levitt, 1988, Aromatic rings act as hydrogen bond acceptors, J. Mol. Biol, 201, 751, 10.1016/0022-2836(88)90471-8 · DOI · Paper page
  31. Liu, 1993, Second sphere electrostatic effects in the active site of glutathione S-transferase. Observation of an on-face hydrogen bond between the side-chains of threonine 13 and the π-cloud of tyrosine 6 and its influence on catalysis, J. Am. Chem. Soc, 115, 7910, 10.1021/ja00070a060 · doi:10.1021/ja00070a060
  32. Lubkowski, 1999, Atomic resolution structures of the core domain of avian sarcoma virus integrase and its D64N mutant, Biochemistry, 38, 13512, 10.1021/bi991362q · DOI
  33. Ma, 1997, The cation-π interaction, Chem. Rev, 97, 1303, 10.1021/cr9603744 · DOI · Paper page
  34. Malone, 1997, X—H⋯π(phenyl) interactions. Theoretical and crystallographic observations, J. Chem. Soc. Faraday Trans, 93, 3429, 10.1039/a700669a · doi:10.1039/a700669a
  35. McPhail, 1965, Hydroxyl-benzene hydrogen bonding. An X-ray study, Chem. Commun, 00, 124
  36. Minor, 1996, Crystal structure of soyabean lipoxygenase L-1 at 1.4 Å resolution, Biochemistry, 35, 1067, 10.1021/bi960576u · DOI · Paper page
  37. Mitchell, 1994, Amino/ aromatic interactions in proteins. Is the evidence stacked against hydrogen bonding?, J. Mol. Biol, 239, 10.1006/jmbi.1994.1370 · DOI · Paper page
  38. Nishio, 1995, The CH/π interaction. Significance in molecular recognition, Tetrahedron, 51, 8665, 10.1016/0040-4020(94)01066-9 · DOI · Paper page
  39. Njamudin, 1993, Structure of the bovine eye lens protein γB(γII)-crystallin at 1.47 Å, Acta Crystallog. sect. D, 49, 223, 10.1107/S0907444992007601 · DOI
  40. Parkinson, 1996, Aromatic hydrogen bond in sequence-specific protein DNA recognition, Nature Struct. Biol, 3, 837, 10.1038/nsb1096-837 · doi:10.1038/nsb1096-837
  41. Perutz, 1993, The role of aromatic rings as hydrogen-bond acceptors in molecular recognition, Phil. Trans. Roy. Soc. ser. A, 345, 105, 10.1098/rsta.1993.0122 · doi:10.1098/rsta.1993.0122
  42. Perutz, 1986, Hemoglobin as a receptor of drugs and peptides. X-ray studies of the stereochemistry of binding, J. Am. Chem. Soc, 108, 1064, 10.1021/ja00265a036 · DOI · Paper page
  43. Richardson, 1981, The anatomy and taxonomy of protein structure, Advan. Protein Chem, 34, 167, 10.1016/S0065-3233(08)60520-3 · DOI · Paper page
  44. Rodham, 1993, Hydrogen bonding in the benzene-ammonia dimer, Nature, 362, 735, 10.1038/362735a0 · doi:10.1038/362735a0
  45. Rozenberg, 1999, Structural and IR-spectroscopic evidence of S—H⋯Ph hydrogen bonding in the solid state, New J. Chem, 23, 585, 10.1039/a901508f · doi:10.1039/a901508f
  46. Santelli, 2000, Crystal structure of Mef2a Core bound to DNA at 1.5 Å resolution, J. Mol. Biol, 297, 437, 10.1006/jmbi.2000.3568 · DOI
  47. Schmidt, 1999, Manipulating the coordination number of the ferric iron within the cambialistic superoxide dismutase of Propionibacterium shermanii by changing the pH value. a crystallographic analysis, Eur. J. Biochem, 262, 117, 10.1046/j.1432-1327.1999.00359.x · DOI
  48. Singh, 1990, SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups, J. Mol. Biol, 211, 595, 10.1016/0022-2836(90)90268-Q · DOI · Paper page
  49. Song, 1994, Structural changes of the active site cleft and different saccharide binding modes in human lysozyme co-crystallized with hexa-N-acetyl-chitohexaose at pH 4.0, J. Mol. Biol, 244, 522, 10.1006/jmbi.1994.1750 · doi:10.1006/jmbi.1994.1750
  50. Soisson, 1997, The 1.6 Å structure of the AraC sugar-binding and dimerization domain complexed with d-fucose, J. Mol. Biol, 273, 226, 10.1006/jmbi.1997.1314 · doi:10.1006/jmbi.1997.1314
  51. Steiner, 1998, Structural evidence for the aromatic-(i+1)-amine hydrogen bond in peptides, Acta Crystallog. sect. D, 54, 584, 10.1107/S090744499701500X · doi:10.1107/s090744499701500x
  52. Steiner, 2000, Short N+—H⋯Ph hydrogen bonds in ammonium tetraphenylborate characterized by neutron diffraction, Acta Crystallog. sect. B, 56, 254, 10.1107/S0108768199012318 · doi:10.1107/s0108768199012318
  53. Steiner, 1993, Role of C—H⋯O hydrogen bonds in the coordination of water molecules. Analysis of neutron diffraction data, J. Am. Chem. Soc, 115, 4540, 10.1021/ja00064a016 · doi:10.1021/ja00064a016
  54. Steiner, 1995, Weak hydrogen bonding. Part 2. The hydrogen bond nature of short C—H⋯π contacts, J. Chem. Soc. Perkin Trans. 2, 1321, 10.1039/P29950001321 · doi:10.1039/p29950001321
  55. Steiner, 1997, Neutron diffraction study of aromatic hydrogen bonds. 5-Ethynyl-5H-dibenzo(a,d)-cyclohepten-5-ol at 20 K, Acta Crystallog. sect. B, 53, 843, 10.1107/S0108768197006174 · doi:10.1107/s0108768197006174
  56. Steiner, 1998, Water molecules hydrogen bonding to aromatic acceptors of amino acids. The structure of Tyr-Tyr-Phe dihydrate and a crystallographic database study on peptides, Acta Crystallog. sect. D, 54, 25, 10.1107/S0907444997007981 · doi:10.1107/s0907444997007981
  57. Suzuki, 1992, Benzene forms hydrogen bonds with water, Science, 257, 942, 10.1126/science.257.5072.942 · DOI · Paper page
  58. Tüchsen, 1987, Assignment of asparagine-44 side-chain primary amide 1H HMR resonances and the peptide amide N1H resonance of glycine-37 in basic pancreatic trypsin inhibitor, Biochemistry, 26, 1918, 10.1021/bi00381a020 · doi:10.1021/bi00381a020
  59. van Raaij, 1999, Structure of the human adenovirus serotype 2 fiber head domain at 1.5 Å resolution, Virology, 262, 333, 10.1006/viro.1999.9849 · DOI
  60. Varrot, 1999, Lateral protonation of a glycoside inhibitor. Structure of the Bacillus agaradhaerens Cel5a in complex with a cellobiose-derived imidazole at 0.97 Å resolution, J. Am. Chem. Soc, 121, 2621, 10.1021/ja984238n · doi:10.1021/ja984238n
  61. Vásquez, 1998, Human carboxyhemoglobin at 2.2 Å resolution, Acta Crystallog. sect. D, 54, 355, 10.1107/S0907444997012250 · DOI
  62. Wahl, 1997, C—H⋯O hydrogen bonding in biology, Trends Biochem. Sci, 22, 97, 10.1016/S0968-0004(97)01004-9 · DOI · Paper page
  63. Whittingham, 1998, The interactions of phenol and m-cresol in the insulin hexamer, and their effect on the association properties of B28 Pro→Asp insulin analogues, Biochemistry, 37, 11516, 10.1021/bi980807s · DOI
  64. Wilson, 1992, An unlikely sugar binding site in the 1.65 Å structure of the human aldose reductase holoenzyme implicated in diabetic complications, Science, 257, 81, 10.1126/science.1621098 · DOI · Paper page
  65. Wlodawer, 1984, Structure of bovine pancreatic trypsin inhibitor. Results of joint neutron and X-ray refinement of crystal form II, J. Mol. Biol, 180, 301, 10.1016/S0022-2836(84)80006-6 · DOI · Paper page
  66. Worth, 1995, The aromatic (i+2) amine interaction in peptides, J. Phys. Chem, 99, 17473, 10.1021/j100048a025 · doi:10.1021/j100048a025
  67. Worth, 1998, Use of multiple molecular dynamics trajectories to study biomolecules in solution, J. Phys. Chem B, 102, 6260, 10.1021/jp9808532 · doi:10.1021/jp9808532
  68. Wulf, 1936, The effect of ortho substitution on the absorption of the OH group of phenol in the infrared, J. Am. Chem. Soc, 58, 2287, 10.1021/ja01302a059 · doi:10.1021/ja01302a059

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Metadata

Authors
Steiner, T., & Koellner, G.
Venue
Journal of Molecular Biology
Publisher
Elsevier BV
Published
2001-01
Volume
305
Issue
3
Pages
535-557
ISSN
0022-2836 (ISSN-L)
OpenAlex
W2071268775
Cited by
512
References
1
Type
book review
Language
en
Open access
closed
Licence
www.elsevier.com/tdm/userlicense/1.0/ (tdm)

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CoChat. (2026). Citation check: Hydrogen bonds with π-acceptors in proteins: frequencies and role in stabilizing local 3D structures11Edited by R. Huber. https://app.cochat.ai/papers/10.1006/jmbi.2000.4301
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Steiner, T., & Koellner, G. (2001). Hydrogen bonds with π-acceptors in proteins: frequencies and role in stabilizing local 3D structures11Edited by R. Huber. Journal of Molecular Biology. https://doi.org/10.1006/jmbi.2000.4301

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