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APOE and TREM2 regulate amyloid-responsive microglia in Alzheimer’s disease
Open accessAbstract
Beta-amyloid deposition is a defining feature of Alzheimer's disease (AD). How genetic risk factors, like APOE and TREM2, intersect with cellular responses to beta-amyloid in human tissues is not fully understood. Using single-nucleus RNA sequencing of postmortem human brain with varied APOE and TREM2 genotypes and neuropathology, we identified distinct microglia subpopulations, including a subpopulation of CD163-positive amyloid-responsive microglia (ARM) that are depleted in cases with APOE and TREM2 risk variants. We validated our single-nucleus RNA sequencing findings in an expanded cohort of AD cases, demonstrating that APOE and TREM2 risk variants are associated with a significant reduction in CD163-positive amyloid-responsive microglia. Our results showcase the diverse microglial response in AD and underscore how genetic risk factors influence cellular responses to underlying pathologies.
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“The trajectory of MG-M4, containing CD163 as a hub gene, was consistent with that of DAM-like module MG-M1, and was enriched for processes including phagocytosis, myeloid cell differentiation, and neutrophil activation (Figure 6D); therefore, it is possible that MG-M4 represents an alternative microglial activation module.55”
From hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data (2023) · cites this paper as [55]
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“The trajectory of MG-M4, containing CD163 as a hub gene, was consistent with that of DAM-like module MG-M1, and was enriched for processes including phagocytosis, myeloid cell differentiation, and neutrophil activation (Figure 6D); therefore, it is possible that MG-M4 represents an alternative microglial activation module.55”
From hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data (2023) · cites this paper as [55]
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“The trajectory of MG-M4, containing CD163 as a hub gene, was consistent with that of DAM-like module MG-M1, and was enriched for processes including phagocytosis, myeloid cell differentiation, and neutrophil activation (Figure 6D); therefore, it is possible that MG-M4 represents an alternative microglial activation module.55”
From hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data (2023) · cites this paper as [55]
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Metadata
- Authors
- Nguyen, A. T., Wang, K., Hu, G., Wang, X., Miao, Z., Azevedo, J. A., Suh, E., Van Deerlin, V. M., Choi, D., Roeder, K., Li, M., & Lee, E. B.
- Affiliations
- University of Pennsylvania (US)
- Nankai University (CN)
- Carnegie Mellon University (US)
- Corresponding author
- Li, Mingyao
- Lee, Edward B.
- ORCID
- Venue
- Acta Neuropathologica
- Published
- 2020-08-25
- Volume
- 140
- Issue
- 4
- Pages
- 477-493
- ISSN
- 0001-6322 (ISSN-L)
- 1432-0533
- PMC
- PMC7520051
- OpenAlex
- W3080402156
- Cited by
- 241
- References
- 79
- Citations by year
- 2026: 33 · 2025: 39 · 2024: 67 · 2023: 43 · 2022: 32 · 2021: 23 · 2020: 2
- FWCI
- 9.51
- Type
- journal article
- Language
- en
- Update notices
- correction (2023-08-17)
- Open access
- green
- europepmc.org
- Licence
- Locations
- Acta Neuropathologica (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion, cc-by)
- PubMed Central (acceptedVersion, cc-by)
- Funders
- National Institutes of Health (R01NS095793, R56AG063344, P30AG010124, T32AG000255, R01GM108600, R01GM125301, R37MH05788)
- University of Pennsylvania Institute on Aging Pilot Grant (Pilot Grant)
- Topics
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Alzheimer's disease research and treatments
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Keywords
- Alzheimer's disease, apolipoprotein E, TREM2, amyloid-beta, microglial subpopulations, CD163, genetic risk variants, single-nucleus RNA sequencing, postmortem brain
- MeSH terms
- Alzheimer Disease, Apolipoproteins E, Humans, Membrane Glycoproteins, Receptors, Immunologic, Amyloid beta-Peptides, Microglia
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