Fast unfolding of communities in large networks
Open accessAbstract
We propose a simple method to extract the community structure of large networks. Our method is a heuristic method that is based on modularity optimization. It is shown to outperform all other known community detection methods in terms of computation time. Moreover, the quality of the communities detected is very good, as measured by the so-called modularity. This is shown first by identifying language communities in a Belgian mobile phone network of 2 million customers and by analysing a web graph of 118 million nodes and more than one billion links. The accuracy of our algorithm is also verified on ad hoc modular networks.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Both the Louvain and Leiden algorithms identify Kumārajīva and his students as a community distinct from Dao'an and Huiyuan.
“Both the Louvain (Blondel et al. 2008) and the Leiden algorithm (Traag, Waltman, and van Eck 2018) can identify Kumārajīva and his students as a community distinct from that of Dao'an and Huiyuan (fig.2-1).”
From On the Use of Historical Social Network Analysis in the Study of Chinese Buddhism: The Case of Dao’an, Huiyuan, and Kumārajīva (2020) · cites this paper as Blondel et al. 2008
Kalehbasti et al. proposed replacing the greedy heuristic within the Louvain algorithm by a QUBO solver to consider a larger search space in each iteration.
“Kalehbasti et al.[74] proposed the generalizable idea of replacing the greedy heuristic within the Louvain algorithm [165], a classical heuristic for the k-community detection problem, by a QUBO solver to consider a larger search space in each iteration [74].”
From Quantum Combinatorial Optimization in the NISQ Era: A Systematic Mapping Study (2024) · cites this paper as [165]
Unsupervised clustering by Louvain algorithm and UMAP produced 38 distinct cell clusters.
“Unsupervised clustering by the Louvain algorithm60 and visualization by uniform manifold approximation and projection (UMAP) produced 38 distinct cell clusters”
From The APOE-R136S mutation protects against APOE4-driven tau pathology, neurodegeneration, and neuroinflammation (2023) · cites this paper as [60]
There has been an influx of algorithms that seek to improve upon the traditionally used community detection ones.
“Along with this growth there has been an influx of algorithms that seek to improve upon the traditionally used ones (e.g., [53]).”
From Organizing Heterogeneous Samples Using Community Detection of GIMME-Derived Resting State Functional Networks (2014) · cites this paper as [53]
After PhenoGraph, the standard approach to clustering single-cell datasets has become multi-resolution modularity optimization as implemented in the Louvain algorithm on single-cell KNN graphs.
“After the pioneering PhenoGraph method (Levine et al, 2015), the standard approach to clustering single‐cell datasets has become multi‐resolution modularity optimization (Newman & Girvan, 2004; Reichardt & Bornholdt, 2006) as implemented in the Louvain algorithm (Blondel et al, 2008) on single‐cell KNN graphs.”
From Current best practices in single-cell RNA-seq analysis: a tutorial (2019) · cites this paper as Blondel et al, 2008
Community detection algorithms such as Louvain or Newman-Girvan determine the approximate number of communities by optimizing modularity, or the density of links within communities versus links between communities.
“Community detection algorithms such as Louvain (Blondel et al., 2008) or Newman Girvan (Girvan and Newman, 2002) determine the approximate number of communities by optimizing modularity, or the density of links within communities versus links between communities.”
From Mapping the multiscale structure of biological systems (2021) · cites this paper as Blondel et al., 2008
Community detection in igraph includes Leiden, multilevel (or Louvain), and fluid communities.
“Community detection includes, among others, Leiden [ 26 ], multilevel (or Louvain) [ 30 ] and fluid communities [ 31 ].”
From igraph 1.0 enables fast and robust network analysis across programming languages (2026) · cites this paper as [30]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Finding and evaluating community structure in networks
Newman, M. E. J., & Girvan, M. (2004) · Physical Review E · doi:10.1103/physreve.69.026113 · Cited by 13,931 · see citing works
Modularity and community structure in networks
Newman, M. E. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0601602103 · Cited by 12,256 · see citing works
Resolution limit in community detection
Fortunato, S., & Barthélemy, M. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605965104 · Cited by 3,024 · see citing works
Flagged first, then by citations
Research works printed but not linked: 29
- Albert R and Barabási A-L, 2002 Rev. Mod. Phys. 74 4797 · DOI · Paper page
- Newman M E J, Barabási A-L and Watts D J, 2006 The Structure and Dynamics of Networks (Princeton, NJ: Princeton University Press)
- Fortunato S and Castellano C, 2007 arXiv:0712.2716 · arXiv
- Girvan M and Newman M E J, 2002 Proc. Nat. Acad. Sci. 99 7821 · DOI · Paper page
- Radicchi F, Castellano C, Cecconi F, Loreto V and Parisi D, 2004 Proc. Nat. Acad. Sci. 101 2658 · DOI · Paper page
- Clauset A, Newman M E J and Moore C, 2004 Phys. Rev. E 70 066111 · DOI · Paper page
- Wu F and Huberman B A, 2004 Eur. Phys. J. B 38 331 · DOI
- Newman M E J, 2006 Phys. Rev. E 74 036104 · DOI
- Newman M E J, 2004 Phys. Rev. E 70 056131 · DOI
- Newman M E J, 2004 Phys. Rev. E 69 066133 · DOI
- Brandes U, Delling D, Gaertler M, Goerke R, Hoefer M, Nikoloski Z and Wagner D, 2006 arXiv:physics/0608255 · arXiv
- Guimera R, Sales M and Amaral L A N, 2004 Phys. Rev. E 70 025101 · DOI · Paper page
- Wakita K and Tsurumi T, 2007 Proc. IADIS Int. Conf. on WWW/Internet 2007 p 153
- Palla G, Derényi I, Farkas I and Vicsek T, 2005 Nature 435 814 · DOI · Paper page
- Raghavan U N, Albert R and Kumara S, 2007 Phys. Rev. E 76 036106 · DOI
- Sales-Pardo M, Guimera R, Moreira A A and Amaral L A N, 2007 Proc. Nat. Acad. Sci. 104 15224 · DOI
- Arenas A, Duch J, Fernández A and Gómez S, 2007 New J. Phys. 9 176 · DOI
- Song C, Havlin S and Makse H A, 2005 Nature 433 392 · DOI · Paper page
- Hoerdt M and Magoni D, 2003 Proc. 11th Int. Conf. on Software, Telecommunications and Computer Networks p 257
- Albert R, Jeong H and Barabási A-L, 1999 Nature 401 130 · DOI
- Danon L, Díaz-Guilera A, Duch J and Arenas A, 2005 J. Stat. Mech. P09008 · DOI
- Reichardt J and Bornholdt S, 2004 Phys. Rev. Lett. 93 218701 · DOI
- Duch J and Arenas A, 2005 Phys. Rev. E 72 027104 · DOI
- Lancichinetti A, Fortunato S and Kertesz J, 2008 arXiv:0802.1218 · arXiv
- Lambiotte R, Blondel V D, de Kerchove C, Huens E, Prieur C, Smoreda Z and Van Dooren P, 2008 Physica A 387 5317 · DOI
- Palla G, Barabási A-L and Vicsek T, 2007 Nature 446 664 · DOI
- Onnela J-P, Saramäki J, Hyvönen J, Szabó G, Lazer D, Kaski K, Kertész J and Barabási A-L, 2007 Proc. Nat. Acad. Sci. 104 7332 · DOI
- Lambiotte R, Ausloos M and Ho lyst J A, 2007 Phys. Rev. E 75 030101(R) · DOI
- Arenas A, Fernández A and Gómez S, 2008 New J. Phys. 10 053039 · DOI
Cited by
Sorted by citations
Fast, sensitive and accurate integration of single-cell data with Harmony
Korsunsky, I., Millard, N., Fan, J., Slowikowski, K., Zhang, F., Wei, K., Baglaenko, Y., Brenner, M., Loh, P.-R., & Raychaudhuri, S. (2019) · Nature Methods · doi:10.1038/s41592-019-0619-0 · Cited by 10,488 · see citing works
Fortunato, S. (2010) · Physics Reports · doi:10.1016/j.physrep.2009.11.002 · Cited by 11,293 · see citing works
Inference and analysis of cell-cell communication using CellChat
Jin, S., Guerrero-Juarez, C. F., Zhang, L., Chang, I., Ramos, R., Kuan, C.-H., Myung, P., Plikus, M. V., & Nie, Q. (2021) · Nature Communications · doi:10.1038/s41467-021-21246-9 · Cited by 8,409 · see citing works
SCANPY: large-scale single-cell gene expression data analysis
Wolf, F. A., Angerer, P., & Theis, F. J. (2018) · Genome Biology · doi:10.1186/s13059-017-1382-0 · Cited by 8,881 · see citing works
The spread of true and false news online
Vosoughi, S., Roy, D., & Aral, S. (2018) · Science · doi:10.1126/science.aap9559 · Cited by 8,847 · see citing works
From Louvain to Leiden: guaranteeing well-connected communities
Traag, V. A., Waltman, L., & van Eck, N. J. (2019) · Scientific Reports · doi:10.1038/s41598-019-41695-z · Cited by 5,635 · see citing works
Simultaneous epitope and transcriptome measurement in single cells
Stoeckius, M., Hafemeister, C., Stephenson, W., Houck-Loomis, B., Chattopadhyay, P. K., Swerdlow, H., Satija, R., & Smibert, P. (2017) · Nature Methods · doi:10.1038/nmeth.4380 · Cited by 3,098 · see citing works
Generalizing RNA velocity to transient cell states through dynamical modeling
Bergen, V., Lange, M., Peidli, S., Wolf, F. A., & Theis, F. J. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0591-3 · Cited by 2,951 · see citing works
Scrublet: computational identification of cell doublets in single-cell transcriptomic data
Wolock, S. L., Lopez, R., & Klein, A. M. (2019) · Cell Systems · doi:10.1016/j.cels.2018.11.005 · Cited by 2,758 · see citing works
Single-cell transcriptomic analysis of Alzheimer’s disease
Mathys, H., Davila-Velderrain, J., Peng, Z., Gao, F., Mohammadi, S., Young, J. Z., Menon, M., He, L., Abdurrob, F., Jiang, X., et al. (2019) · Nature · doi:10.1038/s41586-019-1195-2 · Cited by 2,568 · see citing works
Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis
Levine, J. H., Simonds, E. F., Bendall, S. C., Davis, K. L., Amir, E.-A. D., Tadmor, M. D., Litvin, O., Fienberg, H. G., Jager, A., Zunder, E. R., et al. (2015) · Cell · doi:10.1016/j.cell.2015.05.047 · Cited by 2,303 · see citing works
Meta-analysis of the heritability of human traits based on fifty years of twin studies
Polderman, T. J. C., Benyamin, B., de Leeuw, C. A., Sullivan, P. F., van Bochoven, A., Visscher, P. M., & Posthuma, D. (2015) · Nature Genetics · doi:10.1038/ng.3285 · Cited by 2,467 · see citing works
Regev, A., Teichmann, S. A., Lander, E. S., Amit, I., Benoist, C., Birney, E., Bodenmiller, B., Campbell, P., Carninci, P., Clatworthy, M., et al. (2017) · eLife · doi:10.7554/elife.27041 · Cited by 2,232 · see citing works
Current best practices in single-cell RNA-seq analysis: a tutorial
Luecken, M. D., & Theis, F. J. (2019) · Molecular Systems Biology · doi:10.15252/msb.20188746 · Cited by 2,231 · see citing works
Green supply chain management: A review and bibliometric analysis
Fahimnia, B., Sarkis, J., & Davarzani, H. (2015) · International Journal of Production Economics · doi:10.1016/j.ijpe.2015.01.003 · Cited by 2,131 · see citing works
The echo chamber effect on social media
Cinelli, M., De Francisci Morales, G., Galeazzi, A., Quattrociocchi, W., & Starnini, M. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2023301118 · Cited by 2,092 · see citing works
“We detected communities by applying the Louvain algorithm (41), removing singleton communities with only one user.”
MethodFake news on Twitter during the 2016 U.S. presidential election
Grinberg, N., Joseph, K., Friedland, L., Swire-Thompson, B., & Lazer, D. (2019) · Science · doi:10.1126/science.aau2706 · Cited by 1,803 · see citing works
Dynamic reconfiguration of human brain networks during learning
Bassett, D. S., Wymbs, N. F., Porter, M. A., Mucha, P. J., Carlson, J. M., & Grafton, S. T. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1018985108 · Cited by 1,705 · see citing works
Intrinsic and task-evoked network architectures of the human brain
Cole, M. W., Bassett, D. S., Power, J. D., Braver, T. S., & Petersen, S. E. (2014) · Neuron · doi:10.1016/j.neuron.2014.05.014 · Cited by 1,564 · see citing works
Wolf, F. A., Hamey, F. K., Plass, M., Solana, J., Dahlin, J. S., Göttgens, B., Rajewsky, N., Simon, L., & Theis, F. J. (2019) · Genome Biology · doi:10.1186/s13059-019-1663-x · Cited by 1,698 · see citing works
Amir, E.-A. D., Davis, K. L., Tadmor, M. D., Simonds, E. F., Levine, J. H., Bendall, S. C., Shenfeld, D. K., Krishnaswamy, S., Nolan, G. P., & Pe'er, D. (2013) · Nature Biotechnology · doi:10.1038/nbt.2594 · Cited by 1,550 · see citing works
Uncovering disease-disease relationships through the incomplete interactome
Menche, J., Sharma, A., Kitsak, M., Ghiassian, S. D., Vidal, M., Loscalzo, J., & Barabási, A.-L. (2015) · Science · doi:10.1126/science.1257601 · Cited by 1,546 · see citing works
Conserved pan-cancer microenvironment subtypes predict response to immunotherapy
Bagaev, A., Kotlov, N., Nomie, K., Svekolkin, V., Gafurov, A., Isaeva, O., Osokin, N., Kozlov, I., Frenkel, F., Gancharova, O., et al. (2021) · Cancer Cell · doi:10.1016/j.ccell.2021.04.014 · Cited by 1,302 · see citing works
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
The Tabula Muris Consortium, Almanzar, N., Antony, J., Baghel, A. S., Bakerman, I., Bansal, I., Barres, B. A., Beachy, P. A., Berdnik, D., Bilen, B., et al. (2020) · Nature · doi:10.1038/s41586-020-2496-1 · Cited by 1,247 · see citing works
Sporns, O., & Betzel, R. F. (2016) · Annual Review of Psychology · doi:10.1146/annurev-psych-122414-033634 · Cited by 1,334 · see citing works
Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Zappia, L., & Oshlack, A. (2018) · GigaScience · doi:10.1093/gigascience/giy083 · Cited by 1,064 · see citing works
Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
Shekhar, K., Lapan, S. W., Whitney, I. E., Tran, N. M., Macosko, E. Z., Kowalczyk, M., Adiconis, X., Levin, J. Z., Nemesh, J., Goldman, M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.07.054 · Cited by 1,176 · see citing works
Hu, J., Li, X., Coleman, K., Schroeder, A., Ma, N., Irwin, D. J., Lee, E. B., Shinohara, R. T., & Li, M. (2021) · Nature Methods · doi:10.1038/s41592-021-01255-8 · Cited by 1,113 · see citing works
Ciric, R., Wolf, D. H., Power, J. D., Roalf, D. R., Baum, G. L., Ruparel, K., Shinohara, R. T., Elliott, M. A., Eickhoff, S. B., Davatzikos, C., et al. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.03.020 · Cited by 1,042 · see citing works
Single-cell immune landscape of human atherosclerotic plaques
Fernandez, D. M., Rahman, A. H., Fernandez, N. F., Chudnovskiy, A., Amir, E.-A. D., Amadori, L., Khan, N. S., Wong, C. K., Shamailova, R., Hill, C. A., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0590-4 · Cited by 970 · see citing works
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods
Ding, J., Adiconis, X., Simmons, S. K., Kowalczyk, M. S., Hession, C. C., Marjanovic, N. D., Hughes, T. K., Wadsworth, M. H., Burks, T., Nguyen, L. T., et al. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0465-8 · Cited by 871 · see citing works
A Review of Theory and Practice in Scientometrics
Mingers, J., & Leydesdorff, L. (2015) · European Journal of Operational Research · doi:10.1016/j.ejor.2015.04.002 · Cited by 1,002 · see citing works
Performance of modularity maximization in practical contexts
Good, B. H., de Montjoye, Y.-A., & Clauset, A. (2010) · Physical Review E · doi:10.1103/physreve.81.046106 · Cited by 937 · see citing works
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
Pliner, H. A., Packer, J. S., McFaline-Figueroa, J. L., Cusanovich, D. A., Daza, R. M., Aghamirzaie, D., Srivatsan, S., Qiu, X., Jackson, D., Minkina, A., et al. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.06.044 · Cited by 789 · see citing works
Differential abundance testing on single-cell data using k-nearest neighbor graphs
Dann, E., Henderson, N. C., Teichmann, S. A., Morgan, M. D., & Marioni, J. C. (2022) · Nature Biotechnology · doi:10.1038/s41587-021-01033-z · Cited by 938 · see citing works
Controllability of structural brain networks
Gu, S., Pasqualetti, F., Cieslak, M., Telesford, Q. K., Yu, A. B., Kahn, A. E., Medaglia, J. D., Vettel, J. M., Miller, M. B., Grafton, S. T., et al. (2015) · Nature Communications · doi:10.1038/ncomms9414 · Cited by 912 · see citing works
Self-Renewing Resident Cardiac Macrophages Limit Adverse Remodeling Following Myocardial Infarction
Dick, S. A., Macklin, J. A., Nejat, S., Momen, A., Clemente-Casares, X., Althagafi, M. G., Chen, J., Kantores, C., Hosseinzadeh, S., Aronoff, L., et al. (2019) · Nature Immunology · doi:10.1038/s41590-018-0272-2 · Cited by 883 · see citing works
Hierarchical organization of cortical and thalamic connectivity
Harris, J. A., Mihalas, S., Hirokawa, K. E., Whitesell, J. D., Choi, H., Bernard, A., Bohn, P., Caldejon, S., Casal, L., Cho, A., et al. (2019) · Nature · doi:10.1038/s41586-019-1716-z · Cited by 785 · see citing works
Xia, C., Fan, J., Emanuel, G., Hao, J., & Zhuang, X. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1912459116 · Cited by 755 · see citing works
Single-cell multi-omics analysis of the immune response in COVID-19
Cambridge Institute of Therapeutic Immunology and Infectious Disease-National Institute of Health Research (CITIID-NIHR) COVID-19 BioResource Collaboration, Stephenson, E., Reynolds, G., Botting, R. A., Calero-Nieto, F. J., Morgan, M. D., Tuong, Z. K., Bach, K., Sungnak, W., Worlock, K. B., et al. (2021) · Nature Medicine · doi:10.1038/s41591-021-01329-2 · Cited by 742 · see citing works
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
Jaitin, D. A., Weiner, A., Yofe, I., Lara-Astiaso, D., Keren-Shaul, H., David, E., Salame, T. M., Tanay, A., van Oudenaarden, A., & Amit, I. (2016) · Cell · doi:10.1016/j.cell.2016.11.039 · Cited by 777 · see citing works
Processing Social Media Messages in Mass Emergency: A Survey
Imran, M., Castillo, C., Diaz, F., & Vieweg, S. (2015) · ACM Computing Surveys · doi:10.1145/2771588 · Cited by 804 · see citing works
hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
Morabito, S., Reese, F., Rahimzadeh, N., Miyoshi, E., & Swarup, V. (2023) · Cell Reports Methods · doi:10.1016/j.crmeth.2023.100498 · Cited by 773 · see citing works
Decoding myofibroblast origins in human kidney fibrosis
Kuppe, C., Ibrahim, M. M., Kranz, J., Zhang, X., Ziegler, S., Perales-Patón, J., Jansen, J., Reimer, K. C., Smith, J. R., Dobie, R., et al. (2021) · Nature · doi:10.1038/s41586-020-2941-1 · Cited by 769 · see citing works
TREM2 regulates microglial cholesterol metabolism upon chronic phagocytic challenge
Nugent, A. A., Lin, K., van Lengerich, B., Lianoglou, S., Przybyla, L., Davis, S. S., Llapashtica, C., Wang, J., Kim, D. J., Xia, D., et al. (2020) · Neuron · doi:10.1016/j.neuron.2019.12.007 · Cited by 745 · see citing works
Abdul, A., Vermeulen, J., Wang, D., Lim, B. Y., & Kankanhalli, M. (2018) · Proceedings of the 2018 CHI Conference on Human Factors in Computing Systems · doi:10.1145/3173574.3174156 · Cited by 743 · see citing works
Revealing the vectors of cellular identity with single-cell genomics
Wagner, A., Regev, A., & Yosef, N. (2016) · Nature Biotechnology · doi:10.1038/nbt.3711 · Cited by 632 · see citing works
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
Yazar, S., Alquicira-Hernandez, J., Wing, K., Senabouth, A., Gordon, M. G., Andersen, S., Lu, Q., Rowson, A., Taylor, T. R. P., Clarke, L., et al. (2022) · Science · doi:10.1126/science.abf3041 · Cited by 682 · see citing works
Long, Y., Ang, K. S., Li, M., Chong, K. L. K., Sethi, R., Zhong, C., Xu, H., Ong, Z., Sachaphibulkij, K., Chen, A., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36796-3 · Cited by 700 · see citing works
A visual motion detection circuit suggested by Drosophila connectomics
Takemura, S.-Y., Bharioke, A., Lu, Z., Nern, A., Vitaladevuni, S., Rivlin, P. K., Katz, W. T., Olbris, D. J., Plaza, S. M., Winston, P., et al. (2013) · Nature · doi:10.1038/nature12450 · Cited by 686 · see citing works
Tran, N. M., Shekhar, K., Whitney, I. E., Jacobi, A., Benhar, I., Hong, G., Yan, W., Adiconis, X., Arnold, M. E., Lee, J. M., et al. (2019) · Neuron · doi:10.1016/j.neuron.2019.11.006 · Cited by 627 · see citing works
Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1-CD8+ Tumor-Infiltrating T Cells
Kurtulus, S., Madi, A., Escobar, G., Klapholz, M., Nyman, J., Christian, E., Pawlak, M., Dionne, D., Xia, J., Rozenblatt-Rosen, O., et al. (2019) · Immunity · doi:10.1016/j.immuni.2018.11.014 · Cited by 636 · see citing works
Homological scaffolds of brain functional networks
Petri, G., Expert, P., Turkheimer, F., Carhart-Harris, R., Nutt, D., Hellyer, P. J., & Vaccarino, F. (2014) · Journal of The Royal Society Interface · doi:10.1098/rsif.2014.0873 · Cited by 675 · see citing works
Proteogenomic and metabolomic characterization of human glioblastoma
Wang, L.-B., Karpova, A., Gritsenko, M. A., Kyle, J. E., Cao, S., Li, Y., Rykunov, D., Colaprico, A., Rothstein, J. H., Hong, R., et al. (2021) · Cancer Cell · doi:10.1016/j.ccell.2021.01.006 · Cited by 661 · see citing works
Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution
Pollen, A. A., Bhaduri, A., Andrews, M. G., Nowakowski, T. J., Meyerson, O. S., Mostajo-Radji, M. A., Di Lullo, E., Alvarado, B., Bedolli, M., Dougherty, M. L., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.017 · Cited by 600 · see citing works
Smajić, S., Prada-Medina, C. A., Landoulsi, Z., Ghelfi, J., Delcambre, S., Dietrich, C., Jarazo, J., Henck, J., Balachandran, S., Pachchek, S., et al. (2022) · Brain · doi:10.1093/brain/awab446 · Cited by 590 · see citing works
The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow
Blinder, P., Tsai, P. S., Kaufhold, J. P., Knutsen, P. M., Suhl, H., & Kleinfeld, D. (2013) · Nature Neuroscience · doi:10.1038/nn.3426 · Cited by 573 · see citing works
Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH
Zhang, M., Eichhorn, S. W., Zingg, B., Yao, Z., Cotter, K., Zeng, H., Dong, H., & Zhuang, X. (2021) · Nature · doi:10.1038/s41586-021-03705-x · Cited by 498 · see citing works
Developmental diversification of cortical inhibitory interneurons
Mayer, C., Hafemeister, C., Bandler, R. C., Machold, R., Batista Brito, R., Jaglin, X., Allaway, K., Butler, A., Fishell, G., & Satija, R. (2018) · Nature · doi:10.1038/nature25999 · Cited by 492 · see citing works
Crowell, H. L., Soneson, C., Germain, P.-L., Calini, D., Collin, L., Raposo, C., Malhotra, D., & Robinson, M. D. (2020) · Nature Communications · doi:10.1038/s41467-020-19894-4 · Cited by 515 · see citing works
Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients
Bost, P., Giladi, A., Liu, Y., Bendjelal, Y., Xu, G., David, E., Blecher-Gonen, R., Cohen, M., Medaglia, C., Li, H., et al. (2020) · Cell · doi:10.1016/j.cell.2020.05.006 · Cited by 471 · see citing works
Distinct Global Brain Dynamics and Spatiotemporal Organization of the Salience Network
Chen, T., Cai, W., Ryali, S., Supekar, K., & Menon, V. (2016) · PLOS Biology · doi:10.1371/journal.pbio.1002469 · Cited by 480 · see citing works
Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy
Luoma, A. M., Suo, S., Williams, H. L., Sharova, T., Sullivan, K., Manos, M., Bowling, P., Hodi, F. S., Rahma, O., Sullivan, R. J., et al. (2020) · Cell · doi:10.1016/j.cell.2020.06.001 · Cited by 484 · see citing works
Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
Plass, M., Solana, J., Wolf, F. A., Ayoub, S., Misios, A., Glažar, P., Obermayer, B., Theis, F. J., Kocks, C., & Rajewsky, N. (2018) · Science · doi:10.1126/science.aaq1723 · Cited by 474 · see citing works
Chae, B. (. (2015) · International Journal of Production Economics · doi:10.1016/j.ijpe.2014.12.037 · Cited by 481 · see citing works
Molecular logic of cellular diversification in the mouse cerebral cortex
Di Bella, D. J., Habibi, E., Stickels, R. R., Scalia, G., Brown, J., Yadollahpour, P., Yang, S. M., Abbate, C., Biancalani, T., Macosko, E. Z., et al. (2021) · Nature · doi:10.1038/s41586-021-03670-5 · Cited by 464 · see citing works
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Fang, R., Preissl, S., Li, Y., Hou, X., Lucero, J., Wang, X., Motamedi, A., Shiau, A. K., Zhou, X., Xie, F., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-21583-9 · Cited by 455 · see citing works
Baum, G. L., Ciric, R., Roalf, D. R., Betzel, R. F., Moore, T. M., Shinohara, R. T., Kahn, A. E., Vandekar, S. N., Rupert, P. E., Quarmley, M., et al. (2017) · Current Biology · doi:10.1016/j.cub.2017.04.051 · Cited by 401 · see citing works
Detecting Activated Cell Populations Using Single-Cell RNA-Seq
Wu, Y. E., Pan, L., Zuo, Y., Li, X., & Hong, W. (2017) · Neuron · doi:10.1016/j.neuron.2017.09.026 · Cited by 438 · see citing works
Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations
Affo, S., Nair, A., Brundu, F., Ravichandra, A., Bhattacharjee, S., Matsuda, M., Chin, L., Filliol, A., Wen, W., Song, X., et al. (2021) · Cancer Cell · doi:10.1016/j.ccell.2021.03.012 · Cited by 416 · see citing works
The microbiota regulate neuronal function and fear extinction learning
Chu, C., Murdock, M. H., Jing, D., Won, T. H., Chung, H., Kressel, A. M., Tsaava, T., Addorisio, M. E., Putzel, G. G., Zhou, L., et al. (2019) · Nature · doi:10.1038/s41586-019-1644-y · Cited by 421 · see citing works
Assessment of computational methods for the analysis of single-cell ATAC-seq data
Chen, H., Lareau, C., Andreani, T., Vinyard, M. E., Garcia, S. P., Clement, K., Andrade-Navarro, M. A., Buenrostro, J. D., & Pinello, L. (2019) · Genome Biology · doi:10.1186/s13059-019-1854-5 · Cited by 332 · see citing works
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Yao, Z., Liu, H., Xie, F., Fischer, S., Adkins, R. S., Aldridge, A. I., Ament, S. A., Bartlett, A., Behrens, M. M., Van den Berge, K., et al. (2021) · Nature · doi:10.1038/s41586-021-03500-8 · Cited by 398 · see citing works
Cooperative and competitive spreading dynamics on the human connectome
Mišić, B., Betzel, R. F., Nematzadeh, A., Goñi, J., Griffa, A., Hagmann, P., Flammini, A., Ahn, Y.-Y., & Sporns, O. (2015) · Neuron · doi:10.1016/j.neuron.2015.05.035 · Cited by 342 · see citing works
Polarization of the vaccination debate on Facebook
Schmidt, A. L., Zollo, F., Scala, A., Betsch, C., & Quattrociocchi, W. (2018) · Vaccine · doi:10.1016/j.vaccine.2018.05.040 · Cited by 403 · see citing works
Task-Based Core-Periphery Organization of Human Brain Dynamics
Bassett, D. S., Wymbs, N. F., Rombach, M. P., Porter, M. A., Mucha, P. J., & Grafton, S. T. (2013) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003171 · Cited by 356 · see citing works
Big Data and supply chain management: A review and bibliometric analysis
Mishra, D., Gunasekaran, A., Papadopoulos, T., & Childe, S. J. (2018) · Annals of Operations Research · doi:10.1007/s10479-016-2236-y · Cited by 382 · see citing works
Learning the language of viral evolution and escape
Hie, B., Zhong, E. D., Berger, B., & Bryson, B. (2021) · Science · doi:10.1126/science.abd7331 · Cited by 361 · see citing works
Default Mode Dynamics for Global Functional Integration
Vatansever, D., Menon, D. K., Manktelow, A. E., Sahakian, B. J., & Stamatakis, E. A. (2015) · The Journal of Neuroscience · doi:10.1523/jneurosci.2135-15.2015 · Cited by 333 · see citing works
The triumphs and limitations of computational methods for scRNA-seq
Kharchenko, P. V. (2021) · Nature Methods · doi:10.1038/s41592-021-01171-x · Cited by 321 · see citing works
Metagenomics of Parkinson’s disease implicates the gut microbiome in multiple disease mechanisms
Wallen, Z. D., Demirkan, A., Twa, G., Cohen, G., Dean, M. N., Standaert, D. G., Sampson, T. R., & Payami, H. (2022) · Nature Communications · doi:10.1038/s41467-022-34667-x · Cited by 346 · see citing works
Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis
Ranzoni, A. M., Tangherloni, A., Berest, I., Riva, S. G., Myers, B., Strzelecka, P. M., Xu, J., Panada, E., Mohorianu, I., Zaugg, J. B., et al. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2020.11.015 · Cited by 331 · see citing works
Chennu, S., Annen, J., Wannez, S., Thibaut, A., Chatelle, C., Cassol, H., Martens, G., Schnakers, C., Gosseries, O., Menon, D., et al. (2017) · Brain · doi:10.1093/brain/awx163 · Cited by 339 · see citing works
Social Network Analysis for Program Implementation
Valente, T. W., Palinkas, L. A., Czaja, S., Chu, K.-H., & Brown, C. H. (2015) · PLOS ONE · doi:10.1371/journal.pone.0131712 · Cited by 332 · see citing works
In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes
Jin, X., Simmons, S. K., Guo, A., Shetty, A. S., Ko, M., Nguyen, L., Jokhi, V., Robinson, E., Oyler, P., Curry, N., et al. (2020) · Science · doi:10.1126/science.aaz6063 · Cited by 317 · see citing works
Inferring and perturbing cell fate regulomes in human brain organoids
Fleck, J. S., Jansen, S. M. J., Wollny, D., Zenk, F., Seimiya, M., Jain, A., Okamoto, R., Santel, M., He, Z., Camp, J. G., et al. (2023) · Nature · doi:10.1038/s41586-022-05279-8 · Cited by 315 · see citing works
The contribution of network organization and integration to the development of cognitive control
Marek, S., Hwang, K., Foran, W., Hallquist, M. N., & Luna, B. (2015) · PLOS Biology · doi:10.1371/journal.pbio.1002328 · Cited by 337 · see citing works
The mouse cortico–basal ganglia–thalamic network
Foster, N. N., Barry, J., Korobkova, L., Garcia, L., Gao, L., Becerra, M., Sherafat, Y., Peng, B., Li, X., Choi, J.-H., et al. (2021) · Nature · doi:10.1038/s41586-021-03993-3 · Cited by 307 · see citing works
Anatomy of news consumption on Facebook
Schmidt, A. L., Zollo, F., Del Vicario, M., Bessi, A., Scala, A., Caldarelli, G., Stanley, H. E., & Quattrociocchi, W. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1617052114 · Cited by 305 · see citing works
Wieringa, M. (2020) · Proceedings of the 2020 Conference on Fairness, Accountability, and Transparency · doi:10.1145/3351095.3372833 · Cited by 321 · see citing works
Vaghi, M. M., Vértes, P. E., Kitzbichler, M. G., Apergis-Schoute, A. M., van der Flier, F. E., Fineberg, N. A., Sule, A., Zaman, R., Voon, V., Kundu, P., et al. (2017) · Biological Psychiatry · doi:10.1016/j.biopsych.2016.08.009 · Cited by 290 · see citing works
Single-neuron projectome of mouse prefrontal cortex
Gao, L., Liu, S., Gou, L., Hu, Y., Liu, Y., Deng, L., Ma, D., Wang, H., Yang, Q., Chen, Z., et al. (2022) · Nature Neuroscience · doi:10.1038/s41593-022-01041-5 · Cited by 264 · see citing works
Uncovering social network Sybils in the wild
Yang, Z., Wilson, C., Wang, X., Gao, T., Zhao, B. Y., & Dai, Y. (2014) · ACM Transactions on Knowledge Discovery from Data · doi:10.1145/2556609 · Cited by 290 · see citing works
Wan, Y.-W., Al-Ouran, R., Mangleburg, C. G., Perumal, T. M., Lee, T. V., Allison, K., Swarup, V., Funk, C. C., Gaiteri, C., Allen, M., et al. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.107908 · Cited by 295 · see citing works
“, 2010), Louvain (Blondel et al., 2008), Spinglass (Traag and Bruggeman, 2009), and Walktrap (Pons and Latapy, 2005), methods.”
MethodFontugne, R., Borgnat, P., Abry, P., & Fukuda, K. (2010) · Proceedings of the 6th International COnference · doi:10.1145/1921168.1921179 · Cited by 295 · see citing works
Liver homeostasis is maintained by midlobular zone 2 hepatocytes
Wei, Y., Wang, Y. G., Jia, Y., Li, L., Yoon, J., Zhang, S., Wang, Z., Zhang, Y., Zhu, M., Sharma, T., et al. (2021) · Science · doi:10.1126/science.abb1625 · Cited by 292 · see citing works
Ravindra, N. G., Alfajaro, M. M., Gasque, V., Huston, N. C., Wan, H., Szigeti-Buck, K., Yasumoto, Y., Greaney, A. M., Habet, V., Chow, R. D., et al. (2021) · PLOS Biology · doi:10.1371/journal.pbio.3001143 · Cited by 258 · see citing works
Connectome sensitivity or specificity: which is more important?
Zalesky, A., Fornito, A., Cocchi, L., Gollo, L. L., van den Heuvel, M. P., & Breakspear, M. (2016) · NeuroImage · doi:10.1016/j.neuroimage.2016.06.035 · Cited by 275 · see citing works
Single-cell brain organoid screening identifies developmental defects in autism
Li, C., Fleck, J. S., Martins-Costa, C., Burkard, T. R., Themann, J., Stuempflen, M., Peer, A. M., Vertesy, Á., Littleboy, J. B., Esk, C., et al. (2023) · Nature · doi:10.1038/s41586-023-06473-y · Cited by 283 · see citing works
“Cells were partitioned into clusters using the Louvain algorithm (58) with a resolution of 2.”
MethodConsciousness-specific dynamic interactions of brain integration and functional diversity
Luppi, A. I., Craig, M. M., Pappas, I., Finoia, P., Williams, G. B., Allanson, J., Pickard, J. D., Owen, A. M., Naci, L., Menon, D. K., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-12658-9 · Cited by 251 · see citing works
- Authors
- Blondel, V. D., Guillaume, J.-L., Lambiotte, R., & Lefebvre, E.
- Affiliations
- UCLouvain (BE)
- LIP6 (FR)
- Imperial College London (GB)
- Venue
- Journal of Statistical Mechanics: Theory and Experiment
- Publisher
- IOP Publishing
- Published
- 2008-10-01
- Volume
- 2008
- Issue
- 10
- Pages
- P10008
- ISSN
- 1742-5468 (ISSN-L)
- OpenAlex
- W2131681506
- Cited by
- 21,424
- References
- 3
- Citations by year
- 2026: 1670 · 2025: 1998 · 2024: 2038 · 2023: 1890 · 2022: 1955 · 2021: 2137 · 2020: 1821 · 2019: 1612 · 2018: 1411 · 2017: 1122 · 2016: 1014 · 2015: 837 · 2014: 716 · 2013: 526 · 2012: 314
- FWCI
- 90.28
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Journal of Statistical Mechanics Theory and Experiment (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- Repository of the University of Namur (submittedVersion, other-oa)
- HAL (submittedVersion)
- Digital Access to Libraries (Université catholique de Louvain (UCL), l'Université de Namur (UNamur) and the Université Saint-Louis (USL-B)) (submittedVersion)
- arXiv (Cornell University)
- Funders
- Agence Nationale de la Recherche
- Fédération Wallonie-Bruxelles
- Topics
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Complex Network Analysis Techniques
- Physical Sciences › Computer Science › Artificial Intelligence › Advanced Clustering Algorithms Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Keywords
- community detection, modularity optimization, large-scale networks, mobile phone networks, language communities, web graph, modular networks, computational efficiency
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review