Reassortment among Picobirnaviruses Found in Wolves
Abstract
We conducted a viral metagenomics study in diarrheic free-ranging wolves in Portugal, revealing for the first time the presence of reassortant picobirnaviruses. These viruses shared identical capsid segments together with diverse RNA-dependent RNA polymerase segments. Even though causality between these picobirnaviruses and diarrhea could not be established, the study nonetheless confirms for the first time that wolves are a potential reservoir for picobirnaviruses, which might play a role as enteric pathogens.
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Picobirnaviruses are found in humans and other mammals and are thought to be linked with gastroenteritis, but their role in disease remains unclear.
“Picobirnaviruses are found in humans and other mammals and are thought to be linked with gastroenteritis, however their role in disease remains unclear (Malik et al. 2014; Conceição-Neto et al. 2016).”
From Red fox viromes in urban and rural landscapes (2020) · cites this paper as Conceição-Neto et al. 2016
The picobirnavirus-related transcript found here showed the greatest sequence similarity to a picobirnavirus found in wolves with diarrhoeic symptoms.
“The picobirnavirus-related transcript found here showed the greatest sequence similarly to a picobirnavirus found in wolves with diarrhoeic symptoms (Conceição-Neto et al. 2016).”
From Red fox viromes in urban and rural landscapes (2020) · cites this paper as Conceição-Neto et al. 2016
Cites
Malik, Y. S., Kumar, N., Sharma, K., Dhama, K., Shabbir, M. Z., Ganesh, B., Kobayashi, N., & Banyai, K. (2014) · BioMed Research International · doi:10.1155/2014/780752 · Cited by 76 · see citing works
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It’s in the mix: Reassortment of segmented viral genomes
Lowen, A. C. (2018) · PLoS Pathogens · doi:10.1371/journal.ppat.1007200 · Cited by 79
Yinda, C. K., Vanhulle, E., Conceição-Neto, N., Beller, L., Deboutte, W., Shi, C., Ghogomu, S. M., Maes, P., Van Ranst, M., & Matthijnssens, J. (2019) · mSphere · doi:10.1128/msphere.00585-18 · Cited by 75 · see citing works
“The disease association is unclear, but PBV infection has been associated with gastroenteritis in both animals and humans (52, 53) . Up to 28 out of the 63 pools contained reads annotated as Picobirnaviridae with most of the positive pools from individuals in age groups above 20.”
BackgroundSelf-citationRed fox viromes in urban and rural landscapes
Campbell, S. J., Ashley, W., Gil-Fernandez, M., Newsome, T. M., Di Giallonardo, F., Ortiz-Baez, A. S., Mahar, J. E., Towerton, A. L., Gillings, M., Holmes, E. C., et al. (2020) · Virus Evolution · doi:10.1093/ve/veaa065 · Cited by 47 · see citing works
The True Host/s of Picobirnaviruses
Ghosh, S., & Malik, Y. (2021) · Frontiers in Veterinary Science · doi:10.3389/fvets.2020.615293 · Cited by 46
“metagenomics study in diarrheic free-ranging wolves has provided evidence for genetic reassortment events among PBVs (31).”
BackgroundConceição-Neto, N., Theuns, S., Cui, T.-T., Zeller, M., Yinda, C., Christiaens, I., Heylen, E., Ranst, M. V., Carpentier, S., Nauwynck, H., et al. (2017) · Virus Evolution · doi:10.1093/ve/vex024 · Cited by 45 · see citing works
“Enterovirus G encloses 16 viral types and has been detected in North America, Europe, and Asia (Boros et al. 2012; Anbalagan et al. 2014; Van Dung et al. 2014, 2016).”
Self-citationConceição-Neto, N., Godinho, R., Álvares, F., Yinda, C., Deboutte, W., Zeller, M., Laenen, L., Heylen, E., Roque, S., Petrucci-Fonseca, F., et al. (2017) · Ecology and Evolution · doi:10.1002/ece3.2991 · Cited by 35 · see citing works
Self-citationKleymann, A., Becker, A. A. M. J., Malik, Y., Kobayashi, N., & Ghosh, S. (2020) · Viruses · doi:10.3390/v12010099 · Cited by 31
“Phylogenetic distances were measured using the LG + G model of substitution, as described previously [20].”
BackgroundMethodPicobirnaviruses: prevalence, genetic diversity, detection methods
Kashnikov, A., Epifanova, N. V., & Novikova, N. (2020) · Vavilovskii zhurnal genetiki i selektsii · doi:10.18699/vj20.660 · Cited by 20
“…of picobirnaviruses (PBVs) that were found in the feces of terrestrial and marine mammals, reptiles, birds (Ganesh et al., 2014; Malik et al., 2014; Conceicao-Neto et al., 2016; Navarro et al., 2018), in the respiratory tract of pigs (Smits…”
The Challenges of Analysing Highly Diverse Picobirnavirus Sequence Data
Knox, M., Gedye, K., & Hayman, D. (2018) · Viruses · doi:10.3390/v10120685 · Cited by 19
Navarro, R., Chan, Y.-B., Nair, R., Peda, A., Aung, M. S., Ketzis, J., Malik, Y., Kobayashi, N., & Ghosh, S. (2017) · Infection, Genetics and Evolution · doi:10.1016/j.meegid.2017.07.006 · Cited by 18
Malik, Y., Singh, R., & Dhama, K. (2020) · doi:10.1007/978-981-15-2651-0 · Cited by 18
“…the world which has increased concern with the public health aspects of the transmission and circulation of these viruses (Delmas et al. 2018; Fregolente and Gatti 2009; Bányai et al. 2014; Luo et al. 2018; Kuhar et al. 2017; Gallagher et al. 2017; Conceição-Neto et al. 2016; Ganesh et al. 2014).”
BackgroundFecal, oral, blood and skin virome of laboratory rabbits
Xiao, Y., Wang, H., Feng, L., Pan, J., Chen, Z.-Y., Wang, H., Yang, S.-X., Shen, Q., Wang, X.-C., Shan, T., et al. (2020) · Archives of Virology · doi:10.1007/s00705-020-04808-y · Cited by 15
Ghosh, S., Shiokawa, K., Aung, M. S., Malik, Y., & Kobayashi, N. (2018) · Infection, Genetics and Evolution · doi:10.1016/j.meegid.2018.07.024 · Cited by 14
Gallagher, C., Navarro, R., Cruz, K., Aung, M. S., Ng, A., Bajak, E., Beierschmitt, A., Lawrence, M., Dore, K. M., Ketzis, J., et al. (2017) · Virus Research · doi:10.1016/j.virusres.2016.12.021 · Cited by 14
High detection rate and genetic diversity of picobirnavirus in a sheep flock in Brazil.
Kunz, A., Possatti, F., de Freitas, J. D., Alfieri, A. A., & Takiuchi, E. (2018) · Virus Research · doi:10.1016/j.virusres.2018.06.016 · Cited by 12
Molecular characterization of a novel picobirnavirus in a chicken
Pankovics, P., Boros, Á., Nemes, C., Kapusinszky, B., Delwart, E., & Reuter, G. (2018) · Archives of Virology · doi:10.1007/s00705-018-4012-6 · Cited by 11 · see citing works
Kumar, N. G., Mascarenhas, J., Ghosh, S., Masachessi, G., Bandeira, R. D. S., Nates, S. V., Dhama, K., Singh, R., & Malik, Y. (2020) · Livestock Diseases and Management · doi:10.1007/978-981-15-2651-0_13 · Cited by 9
High detection rate and high genetic diversity of genogroup I Picobirnaviruses from roe deer.
Kuhar, U., & Jamnikar-Ciglenečki, U. (2019) · Infection, Genetics and Evolution · doi:10.1016/j.meegid.2019.05.001 · Cited by 6 · see citing works
Epidemiologic Status of Picobirnavirus in India, A Less Explored Viral Disease
Malik, Y., Sircar, S., Saurabh, S., Kattoor, J. J., Singh, R., Ganesh, B., Ghosh, S., Dhama, K., & Singh, R. (2018) · Open Virology Journal · doi:10.2174/1874357901812010099 · Cited by 5
“A recent report has also confirmed and speculated that animal and human PBV strains can re-assort independently [67].”
BackgroundResultOn the nature of picobirnaviruses
Kashnikov, A., Epifanova, N. V., & Novikova, N. (2023) · Vavilovskii zhurnal genetiki i selektsii · doi:10.18699/vjgb-23-32 · Cited by 4
High Prevalence of Genogroup I and Genogroup II Picobirnaviruses in Dromedary Camels
Teng, J. L., Wernery, U., Wong, P.-C., Chan, E., Lee, H. H., Joseph, S., Bai, R., Tang, Y., Wong, E. Y. M., Lau, S., et al. (2021) · Viruses · doi:10.3390/v13030430 · Cited by 4
ENTERIC VIRAL ZOONOSES: COUNTERACTING THROUGH ONE HEALTH APPROACH
Verma, A., Bhat, S., Sircar, S., Dhama, K., & Malik, Y. (2018) · Journal of Experimental Biology and Agricultural Sciences · doi:10.18006/2018.6(1).42.52 · Cited by 3 · see citing works
Picobirnavirus Detection in Animals From Amazon Biome
Chagas, E. N., da Silva, J. R., de Barros, B. D. C. V., Duarte, J. W. B., da Silva, D. S. F., Sousa, E. C., Bezerra, D. A., Pinheiro, H., de Castro, C. M. O., Malik, Y., et al. (2021) · doi:10.21203/rs.3.rs-229416/v1 · Cited by 1
“Since then, PBVs have been described as pathogens that infect a variety of animal species, such as mammals, reptiles, birds, humans, and also in sewage, showing a genetic diversity among circulating strains [11 [11] [12] [13] [14] [15].”
BackgroundRed fox viromes across an urban-rural gradientPreprint
Campbell, S. J., Ashley, W., Gil-Fernández, M., Newsome, T., Giallonardo, F. D., Ortiz-Baez, A., Mahar, J., Towerton, A. L., Gillings, M., Holmes, E., et al. (2020) · bioRxiv · doi:10.1101/2020.06.15.153858 · Cited by 1 · see citing works
“The picobirnavirus related transcript 310 found here showed the greatest sequence similarly to a picobirnavirus found in wolves with diarrheic 311 symptoms (59).”
Background
- Authors
- Conceição-Neto, N., Mesquita, J. R., Zeller, M., Yinda, C. K., Álvares, F., Roque, S., Petrucci-Fonseca, F., Godinho, R., Heylen, E., Van Ranst, M., & Matthijnssens, J.
- Affiliations
- Universidade do Porto (PT)
- Rega Institute for Medical Research (BE)
- University of Lisbon (PT)
- Corresponding author
- Matthijnssens, Jelle
- ORCID
- Venue
- Archives of Virology
- Published
- 2016-07-20
- Volume
- 161
- Issue
- 10
- Pages
- 2859-2862
- ISSN
- 0003-9012 (ISSN-L)
- 0304-8608
- 1432-8798
- OpenAlex
- W2478850813
- Cited by
- 24
- References
- 0
- Citations by year
- 2023: 1 · 2022: 1 · 2021: 3 · 2020: 6 · 2019: 2 · 2018: 7 · 2017: 4
- FWCI
- 4.00
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Archives of Virology (publishedVersion)
- PubMed (publishedVersion)
- Lirias (submittedVersion)
- Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) (submittedVersion)
- Funders
- Agentschap voor Innovatie door Wetenschap en Technologie
- KU Leuven
- Fundação para a Ciência e a Tecnologia (IF/00564/2012, SFRH/BD/12291/2003)
- Topics
- Health Sciences › Medicine › Infectious Diseases › Viral gastroenteritis research and epidemiology
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
- Health Sciences › Medicine › Epidemiology › Virology and Viral Diseases
- Keywords
- viral reassortment, wolf, viral metagenomics, diarrhea, RNA-dependent RNA polymerase, viral reservoir, enteric pathogens, wildlife viruses
- MeSH terms
- Animals, Portugal, RNA Virus Infections, Genetic Variation, Reassortant Viruses, Picobirnavirus, Wolves, Metagenomics
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