Primordial Ocean Chemistry and its Compatibility with the RNA World
Abstract
We examine the stability of three key components needed to establish an RNA World under a range of potential conditions present on the early earth. The stability of ribose, cytosine, and the phosphodiester bond are estimated at different pH values and temperatures by extrapolating available experimental data. The conditions we have chosen range from highly acidic or alkaline hydrothermal vents, to the milder conditions in a primordial ocean at a range of atmospheric CO(2) partial pressures.
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Above 0°C, nucleotides hydrolyze quickly, making their accumulation hard in a hot-start scenario.
“The rapid rates of hydrolysis of nucleotides at temperatures above 0 degrees C would make accumulation of these nucleotides difficult in a hot-start scenario (Kua and Bada 2011;Levy and Miller 1998;Kawamura et al. 2005).”
From Environmental Adaptation from the Origin of Life to the Last Universal Common Ancestor (2018) · cites this paper as Kua and Bada 2011
Cites
Plummer, L. N., & Busenberg, E. (1982) · Geochimica et Cosmochimica Acta · doi:10.1016/0016-7037(82)90056-4 · Cited by 1,886 · see citing works
Nitrous oxide solubility in water and seawater
Weiss, R. F., & Price, B. A. (1980) · Marine Chemistry · doi:10.1016/0304-4203(80)90024-9 · Cited by 1,730 · see citing works
Kasting, J. F. (1993) · Science · doi:10.1126/science.11536547 · Cited by 1,374 · see citing works
Mucci, A. O. (1983) · American Journal of Science · doi:10.2475/ajs.283.7.780 · Cited by 1,181 · see citing works
On the origin of biochemistry at an alkaline hydrothermal vent
Martin, W., & Russell, M. J. (2007) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2006.1881 · Cited by 771 · see citing works
Li, Y., & Breaker, R. R. (1999) · Journal of the American Chemical Society · doi:10.1021/ja990592p · Cited by 587 · see citing works
Cai, W., & Wang, Y. (1998) · Limnology and Oceanography · doi:10.4319/lo.1998.43.4.0657 · Cited by 587 · see citing works
New constraints on Precambrian ocean composition
Grotzinger, J. P., & Kasting, J. F. (1993) · The Journal of Geology · doi:10.1086/648218 · Cited by 424 · see citing works
Rates of decomposition of ribose and other sugars - implications for chemical evolution
Larralde, R., Robertson, M. P., & Miller, S. L. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.18.8158 · Cited by 344 · see citing works
Gesteland, & Cech, T. R. (1999) · Cited by 339 · see citing works
The stability of the RNA bases: implications for the origin of life
Levy, M., & Miller, S. L. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.14.7933 · Cited by 297 · see citing works
Chapter 5 Chemical environments of submarine hydrothermal systems
Shock, E. L. (1992) · Origins of Life and Evolution of Biospheres · doi:10.1007/bf01808019 · Cited by 196 · see citing works
Salinity history of the Earth's early ocean
Knauth, L. P. (1998) · Nature · doi:10.1038/26879 · Cited by 191 · see citing works
Chemical Environments of Submarine Hydrothermal Systems
Shock, E. L. (1992) · Springer eBooks · doi:10.1007/978-94-011-2741-7_5 · Cited by 185 · see citing works
Solvolyses of Cytosine and Cytidine
Garrett, E. R., & Tsau, J. (1972) · Journal of Pharmaceutical Sciences · doi:10.1002/jps.2600610703 · Cited by 62 · see citing works
Zhang, X. C., & Krishnamurthy, R. (2009) · Angewandte Chemie International Edition · doi:10.1002/anie.200904188 · Cited by 19 · see citing works
Intra‐ and Intermolecular Interactions Influence the Reactivity of RNA Oligonucleotides
Linjalahti, H., & Mikkola, S. (2007) · Chemistry & Biodiversity · doi:10.1002/cbdv.200790243 · Cited by 7 · see citing works
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Wächtershäuser, G. (2016) · Journal of Molecular Evolution · doi:10.1007/s00239-015-9727-3 · Cited by 21 · see citing works
From chemical metabolism to life: the origin of the genetic coding process
Danchin, A. (2017) · Beilstein Journal of Organic Chemistry · doi:10.3762/bjoc.13.111 · Cited by 21 · see citing works
Model of protocell compartments – dodecyl hydrogen sulfate vesicles
Liu, B., Gao, M., Li, H., Liu, J., Yuan, S., Du, N., & Hou, W. (2017) · Physical Chemistry Chemical Physics · doi:10.1039/c7cp06379b · Cited by 17 · see citing works
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Mojarro, A., Jin, L., Szostak, J. W., Head, J. W., III, & Zuber, M. T. (2021) · Geobiology · doi:10.1111/gbi.12433 · Cited by 16 · see citing works
Bernhardt, H. S., & Sandwick, R. K. (2014) · Journal of Molecular Evolution · doi:10.1007/s00239-014-9640-1 · Cited by 14 · see citing works
Lin, H., Jiménez, E. I., Arriola, J. T., Müller, U. F., & Krishnamurthy, R. (2021) · Angewandte Chemie International Edition · doi:10.1002/anie.202113625 · Cited by 13 · see citing works
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Arteaga, S. J., Dolenz, B. J., & Znosko, B. M. (2023) · ACS Omega · doi:10.1021/acsomega.3c07563 · Cited by 6 · see citing works
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- Authors
- Kua, J., & Bada, J. L.
- Affiliations
- University of San Diego (US)
- Scripps Institution of Oceanography (US)
- Corresponding author
- Kua, Jeremy
- Venue
- Origins of Life and Evolution of Biospheres
- Published
- 2011-12
- Volume
- 41
- Issue
- 6
- Pages
- 553-558
- ISSN
- 0169-6149 (ISSN-L)
- 1573-0875
- OpenAlex
- W2162607380
- Cited by
- 38
- References
- 17
- Citations by year
- 2025: 1 · 2024: 2 · 2023: 2 · 2022: 1 · 2021: 3 · 2020: 2 · 2019: 3 · 2018: 3 · 2017: 6 · 2016: 3 · 2015: 4 · 2014: 2 · 2013: 3 · 2012: 3
- FWCI
- 1.36
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Origins of Life and Evolution of Biospheres (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation
- National Aeronautics and Space Administration
- Georgia Institute of Technology
- Division of Chemistry
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Stratigraphy of Fossils
- Keywords
- RNA world, early Earth conditions, pH effect, temperature effects, hydrothermal vents, prebiotic chemistry
- MeSH terms
- Origin of Life, Cytosine, Half-Life, Hydrogen-Ion Concentration, Models, Chemical, Oceans and Seas, Ribose, RNA, Temperature, Evolution, Planetary
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