Privacy-preserving neural networks with Homomorphic encryption: Challenges and opportunities
Open accessAbstract
Classical machine learning modeling demands considerable computing power for internal calculations and training with big data in a reasonable amount of time. In recent years, clouds provide services to facilitate this process, but it introduces new security threats of data breaches. Modern encryption techniques ensure security and are considered as the best option to protect stored data and data in transit from an unauthorized third-party. However, a decryption process is necessary when the data must be processed or analyzed, falling into the initial problem of data vulnerability. Fully Homomorphic Encryption (FHE) is considered the holy grail of cryptography. It allows a non-trustworthy third-party resource to process encrypted information without disclosing confidential data. In this paper, we analyze the fundamental concepts of FHE, practical implementations, state-of-the-art approaches, limitations, advantages, disadvantages, potential applications, and development tools focusing on neural networks. In recent years, FHE development demonstrates remarkable progress. However, current literature in the homomorphic neural networks is almost exclusively addressed by practitioners looking for suitable implementations. It still lacks comprehensive and more thorough reviews. We focus on the privacy-preserving homomorphic encryption cryptosystems targeted at neural networks identifying current solutions, open issues, challenges, opportunities, and potential research directions.
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Hybrid PPML frameworks could leverage lightweight HE variants with hierarchical FL architectures, distributing computation across edge devices, RSUs, and cloud servers to minimize latency.
“To address these challenges, hybrid PPML frameworks could leverage lightweight HE variants (like CKKS for approximate arithmetic) with hierarchical FL architectures [17, 109, 149], distributing computation across edge devices, RSUs, and cloud servers to minimize latency.”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
The “Parallelization” section proposes distributed computing to reduce the overhead of homomorphic-encryption neural networks, and §6.1 describes CKKS as supporting approximate arithmetic (page numbers unavailable). The paper does not describe hierarchical federated learning or distributing work among edge devices, RSUs, and cloud servers to minimize latency; nor does it characterize CKKS as lightweight. (LLM, conf=0.86)
Experimental — accuracy not yet measuredHE introduces prohibitive latency in large-scale traffic simulations due to polynomial-degree ciphertext operations, conflicting with sub-second response requirements for dynamic traffic management.
“HE, though theoretically robust, introduces prohibitive latency in large-scale traffic simulations due to polynomial-degree ciphertext operations, conflicting with sub-second response requirements for dynamic traffic management [2, 109, 132].”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
Section 5.5 (page unavailable) reports latency and memory limitations in homomorphically encrypted neural networks and says processing high-degree polynomials takes time. It does not address large-scale traffic simulations or establish that HE latency conflicts with sub-second response requirements for dynamic traffic management. (LLM, conf=0.88)
Experimental — accuracy not yet measuredHE's reliance on lattice-based cryptography introduces latency from ciphertext expansion, especially in inference.
“Moreover, HE's reliance on lattice -based cryptography introduces latency from ciphertext expansion, especially in inference [109].”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
Section 2.3 describes several lattice-based FHE families, and section 4.2 identifies large encrypted messages as a source of low efficiency. Section 5.5 links message count to latency and memory bottlenecks in private prediction. The paper does not specifically attribute inference latency to ciphertext expansion caused by lattice-based cryptography. (LLM, conf=0.83)
Experimental — accuracy not yet measuredGPU-accelerated HE libraries tailored for CKKS/BFV schemes could expedite encrypted inference.
“GPU-accelerated HE libraries tailored for CKKS/BFV schemes could expedite encrypted inference, while Chebyshev polynomial approximations may enable HE-compatible ReLU activations [109].”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
Section 6.1 describes a GPU-accelerated HE library and, separately, libraries supporting CKKS and BFV; the Parallelization section says GPUs could improve NN-HE efficiency. Sections 5.4 and 4.2 discuss Chebyshev polynomial approximations for activation functions and polynomial approximations of ReLU. Our copy does not establish that the GPU-accelerated library is tailored to CKKS/BFV or specifically that Chebyshev approximations enable HE-compatible ReLU. (LLM, conf=0.82)
Experimental — accuracy not yet measuredHE allows arithmetic operations on ciphertexts but struggles with non-linear functions (like ReLU) due to polynomial approximations.
“HE allows arithmetic operations on ciphertexts but struggles with non-linear functions (like ReLU) due to polynomial approximations [109].”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
Chebyshev polynomial approximations may enable HE-compatible ReLU activations.
“GPU-accelerated HE libraries tailored for CKKS/BFV schemes could expedite encrypted inference, while Chebyshev polynomial approximations may enable HE-compatible ReLU activations [109].”
From Privacy-preserving Machine Learning in Internet of Vehicle Applications: Fundamentals, Recent Advances, and Future Direction (2025) · cites this paper as [109]
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Application of Blockchain and Fully Homomorphic Encryption in Online Questionnaires
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Ma, J., Zhang, Y., Liu, H., Tan, P., Ding, J., & Pan, Q. (2023) · IEEE International Conference on Parallel and Distributed Systems (ICPADS) · doi:10.1109/icpads60453.2023.00092
Tran, A.-T., Huynh, V., & Dang, V.-H. (2024) · Lecture notes in computer science · doi:10.1007/978-3-031-67977-3_11
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Thasna, C. A., Chawla, M., & Tiwari, N. (2024) · Lecture notes in networks and systems · doi:10.1007/978-3-031-60935-0_15
Pulido-Gaytan, L. B., Tchemykh, A., Babenko, M. G., Cortés-Mendoza, J. M., González–Vélez, H., & Avetisyan, A. I. (2024) · IEEE International Symposium on Cluster, Cloud and Internet Computing Workshops (CCGridW) · doi:10.1109/ccgridw63211.2024.00011
Self-citationAn Approximate Algorithm for Determining the Sign Function of a Number Using Neural Network Methods
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- Authors
- Pulido-Gaytan, B., Tchernykh, A., Cortés-Mendoza, J. M., Babenko, M., Radchenko, G., Avetisyan, A., & Drozdov, A. Y.
- Affiliations
- South Ural State University (RU)
- North-Caucasus Federal University (RU)
- Institute for System Programming (RU)
- Moscow Institute of Physics and Technology (RU)
- Corresponding author
- Tchernykh, Andrei
- ORCID
- Venue
- Peer-to-Peer Networking and Applications
- Published
- 2021-03-08
- Volume
- 14
- Issue
- 3
- Pages
- 1666-1691
- ISSN
- 1936-6442 (ISSN-L)
- 1936-6450
- OpenAlex
- W3134210339
- Cited by
- 126
- References
- 118
- Citations by year
- 2026: 18 · 2025: 33 · 2024: 27 · 2023: 29 · 2022: 13 · 2021: 6
- FWCI
- 6.63
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Peer-to-Peer Networking and Applications (publishedVersion, cc-by)
- Funders
- Ministry of Education and Science of the Russian Federation (075-15-2020-788)
- Topics
- Physical Sciences › Computer Science › Artificial Intelligence › Cryptography and Data Security
- Physical Sciences › Computer Science › Information Systems › Cloud Data Security Solutions
- Physical Sciences › Computer Science › Artificial Intelligence › Privacy-Preserving Technologies in Data
- Keywords
- fully homomorphic encryption, privacy-preserving machine learning, encrypted data processing, cloud security, data breaches, ciphers
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