Cited by 1HIV Research and TreatmentChromosomal and Genetic VariationsRNA and protein synthesis mechanisms

Noncoding RNAs in Retrovirus Replication

Open access
Duchon, Alice A., Musier-Forsyth, Karin·2018·Retrovirus-Cell Interactions

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/b978-0-12-811185-7.00012-1

Cites

16 of 16 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 423

  1. Abe M. Suzuki H. Nishitsuji H. Shida H. Takaku H. Interaction of human T-cell lymphotropic virus type I Rex protein with Dicer suppresses RNAi silencing FEBS Lett. 584 2010 4313 4318 20869963
  2. Adams J.M. Cory S. Oncogene co-operation in leukaemogenesis Cancer Surv. 15 1992 119 141 1451108
  3. Agy M.B. Wambach M. Foy K. Katze M.G. Expression of cellular genes in CD4 positive lymphoid cells infected by the human immunodeficiency virus, HIV-1: evidence for a host protein synthesis shut-off induced by cellular mRNA degradation Virology 177 1990 251 258 2353454
  4. Ahluwalia J.K. Khan S.Z. Soni K. Rawat P. Gupta A. Hariharan M. Scaria V. Lalwani M. Pillai B. Mitra D. Brahmachari S.K. Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication Retrovirology 5 2008 117 19102781 PMC2635386
  5. Akiyoshi D.E. Denaro M. Zhu H. Greenstein J.L. Banerjee P. Fishman J.A. Identification of a full-length cDNA for an endogenous retrovirus of miniature swine J. Virol. 72 1998 4503 4507 9557749 PMC109691
  6. Ali L.M. Rizvi T.A. Mustafa F. Cross- and co-packaging of retroviral RNAs and their consequences Viruses 8 2016 PMC5086612 27727192
  7. Almeida M.I. Reis R.M. Calin G.A. MicroRNA history: discovery, recent applications, and next frontiers Mutat. Res. 717 2011 1 8 21458467
  8. Amado R.G. Mitsuyasu R.T. Rosenblatt J.D. Ngok F.K. Bakker A. Cole S. Chorn N. Lin L.S. Bristol G. Boyd M.P. MacPherson J.L. Fanning G.C. Todd A.V. Ely J.A. Zack J.A. Symonds G.P. Anti-human immunodeficiency virus hematopoietic progenitor cell-delivered ribozyme in a phase I study: myeloid and lymphoid reconstitution in human immunodeficiency virus type-1-infected patients Hum. Gene Ther. 15 2004 251 262 15018734
  9. Anderson P. Ivanov P. tRNA fragments in human health and disease FEBS Lett. 588 2014 4297 4304 25220675 PMC4339185
  10. Applegate T.L. Birkett D.J. McIntyre G.J. Jaramillo A.B. Symonds G. Murray J.M. In silico modeling indicates the development of HIV-1 resistance to multiple shRNA gene therapy differs to standard antiretroviral therapy Retrovirology 7 2010 83 20932334 PMC2959037
  11. Askew D.S. Bartholomew C. Buchberg A.M. Valentine M.B. Jenkins N.A. Copeland N.G. Ihle J.N. His-1 and His-2: identification and chromosomal mapping of two commonly rearranged sites of viral integration in a myeloid leukemia Oncogene 6 1991 2041 2047 1682866
  12. Askew D.S. Li J. Ihle J.N. Retroviral insertions in the murine His-1 locus activate the expression of a novel RNA that lacks an extensive open reading frame Mol. Cell. Biol. 14 1994 1743 1751 8114708 PMC358532
  13. Bai X.T. Nicot C. miR-28-3p is a cellular restriction factor that inhibits human T cell leukemia virus, type 1 (HTLV-1) replication and virus infection J. Biol. Chem. 290 2015 5381 5390 25568327 PMC4342455
  14. Ballaun C. Farrington G.K. Dobrovnik M. Rusche J. Hauber J. Bohnlein E. Functional analysis of human T-cell leukemia virus type I rex-response element: direct RNA binding of Rex protein correlates with in vivo activity J. Virol. 65 1991 4408 4413 2072457 PMC248880
  15. Balvay L. Lopez Lastra M. Sargueil B. Darlix J.L. Ohlmann T. Translational control of retroviruses Nat. Rev. Microbiol. 5 2007 128 140 17224922 PMC7096986
  16. Barbeau B. Mesnard J.M. Making sense out of antisense transcription in human T-cell lymphotropic viruses (HTLVs) Viruses 3 2011 456 468 21994742 PMC3185765
  17. Barichievy S. Naidoo J. Mhlanga M.M. Non-coding RNAs and HIV: viral manipulation of host dark matter to shape the cellular environment Front. Genet. 6 2015 108 25859257 PMC4374539
  18. Barnes D. Kunitomi M. Vignuzzi M. Saksela K. Andino R. Harnessing endogenous miRNAs to control virus tissue tropism as a strategy for developing attenuated virus vaccines Cell Host Microbe 4 2008 239 248 18779050 PMC2605097
  19. Bartosch B. Weiss R.A. Takeuchi Y. PCR-based cloning and immunocytological titration of infectious porcine endogenous retrovirus subgroup A and B J. Gen. Virol. 83 2002 2231 2240 12185278
  20. Bennasser Y. Jeang K.T. HIV-1 tat interaction with dicer: requirement for RNA Retrovirology 3 2006 95 17181864 PMC1764028
  21. Bennasser Y. Le S.Y. Yeung M.L. Jeang K.T. HIV-1 encoded candidate micro-RNAs and their cellular targets Retrovirology 1 2004 43 15601472 PMC544590
  22. Bennasser Y. Le S.Y. Benkirane M. Jeang K.T. Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing Immunity 22 2005 607 619 15894278
  23. Bennasser Y. Yeung M.L. Jeang K.T. HIV-1 TAR RNA subverts RNA interference in transfected cells through sequestration of TAR RNA-binding protein, TRBP J. Biol. Chem. 281 2006 27674 27678 16887810
  24. Berkhout B. Jeang K.T. RISCy business: microRNAs, pathogenesis, and viruses J. Biol. Chem. 282 2007 26641 26645 17627941
  25. Berkhout B. The primer binding site on the RNA genome of human and simian immunodeficiency viruses is flanked by an upstream hairpin structure Nucleic Acids Res. 25 1997 4013 4017 9321651 PMC147018
  26. Berkowitz R. Fisher J. Goff S.P. RNA packaging Curr. Top. Microbiol. Immunol. 214 1996 177 218 8791728
  27. Bernstein E. Caudy A.A. Hammond S.M. Hannon G.J. Role for a bidentate ribonuclease in the initiation step of RNA interference Nature 409 2001 363 366 11201747
  28. Bet A. Maze E.A. Bansal A. Sterrett S. Gross A. Graff-Dubois S. Samri A. Guihot A. Katlama C. Theodorou I. Mesnard J.M. Moris A. Goepfert P.A. Cardinaud S. The HIV-1 antisense protein (ASP) induces CD8 T cell responses during chronic infection Retrovirology 12 2015 15 25809376 PMC4335690
  29. Birney E. Stamatoyannopoulos J.A. Dutta A. Guigo R. Gingeras T.R. Margulies E.H. Weng Z. Snyder M. Dermitzakis E.T. Thurman R.E. Kuehn M.S. Taylor C.M. Neph S. Koch C.M. Asthana S. Malhotra A. Adzhubei I. Greenbaum J.A. Andrews R.M. Flicek P. Boyle P.J. Cao H. Carter N.P. Clelland G.K. Davis S. Day N. Dhami P. Dillon S.C. Dorschner M.O. Fiegler H. Giresi P.G. Goldy J. Hawrylycz M. Haydock A. Humbert R. James K.D. Johnson B.E. Johnson E.M. Frum T.T. Rosenzweig E.R. Karnani N. Lee K. Lefebvre G.C. Navas P.A. Neri F. Parker S.C. Sabo P.J. Sandstrom R. Shafer A. Vetrie D. Weaver M. Wilcox S. Yu M. Collins F.S. Dekker J. Lieb J.D. Tullius T.D. Crawford G.E. Sunyaev S. Noble W.S. Dunham I. Denoeud F. Reymond A. Kapranov P. Rozowsky J. Zheng D. Castelo R. Frankish A. Harrow J. Ghosh S. Sandelin A. Hofacker I.L. Baertsch R. Keefe D. Dike S. Cheng J. Hirsch H.A. Sekinger E.A. Lagarde J. Abril J.F. Shahab A. Flamm C. Fried C. Hackermuller J. Hertel J. Lindemeyer M. Missal K. Tanzer A. Washietl S. Korbel J. Emanuelsson O. Pedersen J.S. Holroyd N. Taylor R. Swarbreck D. Matthews N. Dickson M.C. Thomas D.J. Weirauch M.T. Gilbert J. Drenkow J. Bell I. Zhao X. Srinivasan K.G. Sung W.K. Ooi H.S. Chiu K.P. Foissac S. Alioto T. Brent M. Pachter L. Tress M.L. Valencia A. Choo S.W. Choo C.Y. Ucla C. Manzano C. Wyss C. Cheung E. Clark T.G. Brown J.B. Ganesh M. Patel S. Tammana H. Chrast J. Henrichsen C.N. Kai C. Kawai J. Nagalakshmi U. Wu J. Lian Z. Lian J. Newburger P. Zhang X. Bickel P. Mattick J.S. Carninci P. Hayashizaki Y. Weissman S. Hubbard T. Myers R.M. Rogers J. Stadler P.F. Lowe T.M. Wei C.L. Ruan Y. Struhl K. Gerstein M. Antonarakis S.E. Fu Y. Green E.D. Karaoz U. Siepel A. Taylor J. Liefer L.A. Wetterstrand K.A. Good P.J. Feingold E.A. Guyer M.S. Cooper G.M. Asimenos G. Dewey C.N. Hou M. Nikolaev S. Montoya-Burgos J.I. Loytynoja A. Whelan S. Pardi F. Massingham T. Huang H. Zhang N.R. Holmes I. Mullikin J.C. Ureta-Vidal A. Paten B. Seringhaus M. Church D. Rosenbloom K. Kent W.J. Stone E.A. Batzoglou S. Goldman N. Hardison R.C. Haussler D. Miller W. Sidow A. Trinklein N.D. Zhang Z.D. Barrera L. Stuart R. King D.C. Ameur A. Enroth S. Bieda M.C. Kim J. Bhinge A.A. Jiang N. Liu J. Yao F. Vega V.B. Lee C.W. Ng P. Yang A. Moqtaderi Z. Zhu Z. Xu X. Squazzo S. Oberley M.J. Inman D. Singer M.A. Richmond T.A. Munn K.J. Rada-Iglesias A. Wallerman O. Komorowski J. Fowler J.C. Couttet P. Bruce A.W. Dovey O.M. Ellis P.D. Langford C.F. Nix D.A. Euskirchen G. Hartman S. Urban A.E. Kraus P. Van Calcar S. Heintzman N. Kim T.H. Wang K. Qu C. Hon G. Luna R. Glass C.K. Rosenfeld M.G. Aldred S.F. Cooper S.J. Halees A. Lin J.M. Shulha H.P. Xu M. Haidar J.N. Yu Y. Iyer V.R. Green R.D. Wadelius C. Farnham P.J. Ren B. Harte R.A. Hinrichs A.S. Trumbower H. Clawson H. Hillman-Jackson J. Zweig A.S. Smith K. Thakkapallayil A. Barber G. Kuhn R.M. Karolchik D. Armengol L. Bird C.P. de Bakker P.I. Kern A.D. Lopez-Bigas N. Martin J.D. Stranger B.E. Woodroffe A. Davydov E. Dimas A. Eyras E. Hallgrimsdottir I.B. Huppert J. Zody M.C. Abecasis G.R. Estivill X. Bouffard G.G. Guan X. Hansen N.F. Idol J.R. Maduro V.V. Maskeri B. McDowell J.C. Park M. Thomas P.J. Young A.C. Blakesley R.W. Muzny D.M. Sodergren E. Wheeler D.A. Worley K.C. Jiang H. Weinstock G.M. Gibbs R.A. Graves T. Fulton R. Mardis E.R. Wilson R.K. Clamp M. Cuff J. Gnerre S. Jaffe D.B. Chang J.L. Lindblad-Toh K. Lander E.S. Koriabine M. Nefedov M. Osoegawa K. Yoshinaga Y. Zhu B. de Jong P.J. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Nature 447 2007 799 816 17571346 PMC2212820
  30. Bishop J.M. Levinson W.E. Sullivan D. Fanshier L. Quintrell N. Jackson J. The low molecular weight RNAs of Rous sarcoma virus. II. The 7 S RNA Virology 42 1970 927 937 4321311
  31. Blond J.L. Beseme F. Duret L. Bouton O. Bedin F. Perron H. Mandrand B. Mallet F. Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family J. Virol. 73 1999 1175 1185 9882319 PMC103938
  32. Boden D. Pusch O. Lee F. Tucker L. Ramratnam B. Human immunodeficiency virus type 1 escape from RNA interference J. Virol. 77 2003 11531 11535 14557638 PMC229317
  33. Boeke J.D. Stoye J.P. Retrotransposons, Endogenous Retroviruses, and the Evolution of Retroelements 1997 21433351
  34. Bogerd H.P. Wiegand H.L. Doehle B.P. Lueders K.K. Cullen B.R. APOBEC3A and APOBEC3B are potent inhibitors of LTR-retrotransposon function in human cells Nucleic Acids Res. 34 2006 89 95 16407327 PMC1326241
  35. Bolinger C. Yilmaz A. Hartman T.R. Kovacic M.B. Fernandez S. Ye J. Forget M. Green P.L. Boris-Lawrie K. RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1 Nucleic Acids Res. 35 2007 2629 2642 17426138 PMC1885656
  36. Bolinger C. Sharma A. Singh D. Yu L. Boris-Lawrie K. RNA helicase A modulates translation of HIV-1 and infectivity of progeny virions Nucleic Acids Res. 38 2010 1686 1696 20007598 PMC2836548
  37. Bonar R.A. Beard J.W. Virus of avian myeloblastosis. XII. Chemical constitution J. Natl. Cancer Inst. 23 1959 183 197 13802431
  38. Bonar R.A. Sverak L. Bolognesi D.P. Langlois A.J. Beard D. Beard J.W. Ribonucleic acid components of BAI strain A (myeloblastosis) avian tumor virus Cancer Res. 27 1967 1138 1157 4290860
  39. Borchert G.M. Lanier W. Davidson B.L. RNA polymerase III transcribes human microRNAs Nat. Struct. Mol. Biol. 13 2006 1097 1101 17099701
  40. Brameier M. Ibing W. Hofer K. Montag J. Stahl-Hennig C. Motzkus D. Mapping the small RNA content of simian immunodeficiency virions (SIV) PLoS One 8 2013 e75063 24086438 PMC3781035
  41. Brasey A. Lopez-Lastra M. Ohlmann T. Beerens N. Berkhout B. Darlix J.L. Sonenberg N. The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle J. Virol. 77 2003 3939 3949 12634354 PMC150645
  42. Brian D.A. Thomason A.R. Rottman F.M. Velicer L.F. Properties of feline leukemia virus. III. Analysis of the RNA J. Virol. 16 1975 535 545 169389 PMC354700
  43. Brierley I. Dos Ramos F.J. Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV Virus Res. 119 2006 29 42 16310880 PMC7114087
  44. Broecker F. Horton R. Heinrich J. Franz A. Schweiger M.R. Lehrach H. Moelling K. The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation Mob. DNA 7 2016 25 27980690 PMC5142424
  45. Buck C.B. Shen X. Egan M.A. Pierson T.C. Walker C.M. Siliciano R.F. The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site J. Virol. 75 2001 181 191 11119587 PMC113911
  46. Buehring G.C. Shen H.M. Jensen H.M. Jin D.L. Hudes M. Block G. Exposure to bovine leukemia virus is associated with breast cancer: a case-control study PLoS One 10 2015 e0134304 26332838 PMC4557937
  47. Cai X. Hagedorn C.H. Cullen B.R. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs RNA 10 2004 1957 1966 15525708 PMC1370684
  48. Calabrese J.M. Seila A.C. Yeo G.W. Sharp P.A. RNA sequence analysis defines Dicer’s role in mouse embryonic stem cells Proc. Natl. Acad. Sci. U.S.A. 104 2007 18097 18102 17989215 PMC2084302
  49. Cann A.J. Principles of Molecular Virology (Standard Edition) 2001 Elsevier Science
  50. Cen S. Khorchid A. Javanbakht H. Gabor J. Stello T. Shiba K. Musier-Forsyth K. Kleiman L. Incorporation of lysyl-tRNA synthetase into human immunodeficiency virus type 1 J. Virol. 75 2001 5043 5048 11333884 PMC114908
  51. Cen S. Javanbakht H. Kim S. Shiba K. Craven R. Rein A. Ewalt K. Schimmel P. Musier-Forsyth K. Kleiman L. Retrovirus-specific packaging of aminoacyl-tRNA synthetases with cognate primer tRNAs J. Virol. 76 2002 13111 13115 12438642 PMC136713
  52. Cen S. Javanbakht H. Niu M. Kleiman L. Ability of wild-type and mutant lysyl-tRNA synthetase to facilitate tRNA(Lys) incorporation into human immunodeficiency virus type 1 J. Virol. 78 2004 1595 1601 14722314 PMC321381
  53. Chable-Bessia C. Meziane O. Latreille D. Triboulet R. Zamborlini A. Wagschal A. Jacquet J.M. Reynes J. Levy Y. Saib A. Bennasser Y. Benkirane M. Suppression of HIV-1 replication by microRNA effectors Retrovirology 6 2009 26 19272132 PMC2657893
  54. Chang C.J. Chao C.H. Xia W. Yang J.Y. Xiong Y. Li C.W. Yu W.H. Rehman S.K. Hsu J.L. Lee H.H. Liu M. Chen C.T. Yu D. Hung M.C. p53 regulates epithelial-mesenchymal transition and stem cell properties through modulating miRNAs Nat. Cell Biol. 13 2011 317 323 21336307 PMC3075845
  55. Chang C.F. D’Souza W.N. Ch’en I.L. Pages G. Pouyssegur J. Hedrick S.M. Polar opposites: Erk direction of CD4 T cell subsets J. Immunol. 189 2012 721 731 22675204 PMC3392534
  56. Cheevers W.P. Archer B.G. Crawford T.B. Characterization of RNA from equine infectious anemia virus J. Virol. 24 1977 489 497 199735 PMC515958
  57. Chen L.L. Carmichael G.G. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA Mol. Cell 35 2009 467 478 19716791 PMC2749223
  58. Chen X. Wolin S.L. The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity J. Mol. Med. (Berl.) 82 2004 232 239 15168680
  59. Chen X. Smith J.D. Shi H. Yang D.D. Flavell R.A. Wolin S.L. The Ro autoantigen binds misfolded U2 small nuclear RNAs and assists mammalian cell survival after UV irradiation Curr. Biol. 13 2003 2206 2211 14680639
  60. Chen H. Lilley C.E. Yu Q. Lee D.V. Chou J. Narvaiza I. Landau N.R. Weitzman M.D. APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons Curr. Biol. 16 2006 480 485 16527742
  61. Chen A.K. Sengupta P. Waki K. Van Engelenburg S.B. Ochiya T. Ablan S.D. Freed E.O. Lippincott-Schwartz J. MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production Proc. Natl. Acad. Sci. U.S.A. 111 2014 E2676 E2683 24938790 PMC4084429
  62. Chendrimada T.P. Gregory R.I. Kumaraswamy E. Norman J. Cooch N. Nishikura K. Shiekhattar R. TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing Nature 436 2005 740 744 15973356 PMC2944926
  63. Chesters P.M. Smith L.P. Nair V. E (XSR) element contributes to the oncogenicity of Avian leukosis virus (subgroup J) J. Gen. Virol. 87 2006 2685 2692 16894209
  64. Chiang K. Liu H. Rice A.P. miR-132 enhances HIV-1 replication Virology 438 2013 1 4 23357732 PMC3594373
  65. Chiu I.M. Skuntz S.F. Nucleotide sequence analysis of squirrel monkey retrovirus reveals a novel primer-binding site for tRNALys1,2 J. Virol. 58 1986 983 987 3634831 PMC253012
  66. Chukkapalli V. Hogue I.B. Boyko V. Hu W.S. Ono A. Interaction between the human immunodeficiency virus type 1 Gag matrix domain and phosphatidylinositol-(4,5)-bisphosphate is essential for efficient Gag membrane binding J. Virol. 82 2008 2405 2417 18094158 PMC2258911
  67. Chukkapalli V. Inlora J. Todd G.C. Ono A. Evidence in support of RNA-mediated inhibition of phosphatidylserine-dependent HIV-1 Gag membrane binding in cells J. Virol. 87 2013 7155 7159 23552424 PMC3676091
  68. Clavel F. Hance A.J. HIV drug resistance N. Engl. J. Med. 350 2004 1023 1035 14999114
  69. Clurman B.E. Hayward W.S. Multiple proto-oncogene activations in avian leukosis virus-induced lymphomas: evidence for stage-specific events Mol. Cell. Biol. 9 1989 2657 2664 2548084 PMC362338
  70. Coley W. Van Duyne R. Carpio L. Guendel I. Kehn-Hall K. Chevalier S. Narayanan A. Luu T. Lee N. Klase Z. Kashanchi F. Absence of DICER in monocytes and its regulation by HIV-1 J. Biol. Chem. 285 2010 31930 31943 20584909 PMC2952194
  71. Colicelli J. Goff S.P. Isolation of a recombinant murine leukemia virus utilizing a new primer tRNA J. Virol. 57 1986 37 45 2416955 PMC252696
  72. Comandur R. Olson E.D. Musier-Forsyth K. Conservation of tRNA mimicry in the 5′-untranslated region of distinct HIV-1 subtypes RNA 23 2017 1850 1859 28860303 PMC5689005
  73. Couez D. Deschamps J. Kettmann R. Stephens R.M. Gilden R.V. Burny A. Nucleotide sequence analysis of the long terminal repeat of integrated bovine leukemia provirus DNA and of adjacent viral and host sequences J. Virol. 49 1984 615 620 6319764 PMC255509
  74. Couturier J.P. Root-Bernstein R.S. HIV may produce inhibitory microRNAs (miRNAs) that block production of CD28, CD4 and some interleukins J. Theor. Biol. 235 2005 169 184 15862587
  75. Cross B.C. Sinning I. Luirink J. High S. Delivering proteins for export from the cytosol Nat. Rev. Mol. Cell Biol. 10 2009 255 264 19305415
  76. Cui J. Tachedjian M. Wang L. Tachedjian G. Wang L.F. Zhang S. Discovery of retroviral homologs in bats: implications for the origin of mammalian gammaretroviruses J. Virol. 86 2012 4288 4293 22318134 PMC3318619
  77. Cullen B.R. Viral RNAs: lessons from the enemy Cell 136 2009 592 597 19239880 PMC7127818
  78. Cullen B.R. MicroRNA expression by an oncogenic retrovirus Proc. Natl. Acad. Sci. U.S.A. 109 2012 2695 2696 22308505 PMC3286959
  79. Dai Z. Ji J. Yan Y. Lin W. Li H. Chen F. Liu Y. Chen W. Bi Y. Xie Q. Role of gga-miR-221 and gga-miR-222 during tumour formation in chickens infected by subgroup J avian leukosis virus Viruses 7 2015 6538 6551 26690468 PMC4690879
  80. Dangel A.W. Mendoza A.R. Baker B.J. Daniel C.M. Carroll M.C. Wu L.C. Yu C.Y. The dichotomous size variation of human complement C4 genes is mediated by a novel family of endogenous retroviruses, which also establishes species-specific genomic patterns among Old World primates Immunogenetics 40 1994 425 436 7545960
  81. d’Arminio Monforte A. Lepri A.C. Rezza G. Pezzotti P. Antinori A. Phillips A.N. Angarano G. Colangeli V. De Luca A. Ippolito G. Caggese L. Soscia F. Filice G. Gritti F. Narciso P. Tirelli U. Moroni M. Insights into the reasons for discontinuation of the first highly active antiretroviral therapy (HAART) regimen in a cohort of antiretroviral naive patients. I.CO.N.A. Study Group. Italian Cohort of Antiretroviral-Naive Patients AIDS 14 2000 499 507 10780712
  82. Das A.T. Brummelkamp T.R. Westerhout E.M. Vink M. Madiredjo M. Bernards R. Berkhout B. Human immunodeficiency virus type 1 escapes from RNA interference-mediated inhibition J. Virol. 78 2004 2601 2605 14963165 PMC369246
  83. de Haro C. Mendez R. Santoyo J. The eIF-2alpha kinases and the control of protein synthesis FASEB J. 10 1996 1378 1387 8903508
  84. Deforges J. de Breyne S. Ameur M. Ulryck N. Chamond N. Saadi A. Ponty Y. Ohlmann T. Sargueil B. Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame Nucleic Acids Res. 45 12 2017 7382 7400 28449096 PMC5499600
  85. Delassus S. Sonigo P. Wain-Hobson S. Genetic organization of gibbon ape leukemia virus Virology 173 1989 205 213 2683360
  86. Desimmie B.A. Schrijvers R. Demeulemeester J. Borrenberghs D. Weydert C. Thys W. Vets S. Van Remoortel B. Hofkens J. De Rijck J. Hendrix J. Bannert N. Gijsbers R. Christ F. Debyser Z. LEDGINs inhibit late stage HIV-1 replication by modulating integrase multimerization in the virions Retrovirology 10 2013 57 23721378 PMC3671127
  87. Dewan V. Wei M. Kleiman L. Musier-Forsyth K. Dual role for motif 1 residues of human lysyl-tRNA synthetase in dimerization and packaging into HIV-1 J. Biol. Chem. 287 2012 41955 41962 23095741 PMC3516742
  88. Dick R.A. Kamynina E. Vogt V.M. Effect of multimerization on membrane association of Rous sarcoma virus and HIV-1 matrix domain proteins J. Virol. 87 2013 13598 13608 24109216 PMC3838224
  89. Diederichs S. Haber D.A. Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression Cell 131 2007 1097 1108 18083100
  90. Dismuke D.J. Aiken C. Evidence for a functional link between uncoating of the human immunodeficiency virus type 1 core and nuclear import of the viral preintegration complex J. Virol. 80 2006 3712 3720 16571788 PMC1440469
  91. Doria M. Neri F. Gallo A. Farace M.G. Michienzi A. Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection Nucleic Acids Res. 37 2009 5848 5858 19651874 PMC2761272
  92. Duesberg P.H. Robinson W.S. Nucleic acid and proteins isolated from the Rauscher mouse leukemia virus (MLV) Proc. Natl. Acad. Sci. U.S.A. 55 1966 219 227 5220869 PMC285779
  93. Dunning J. Sahr F. Rojek A. Gannon F. Carson G. Idriss B. Massaquoi T. Gandi R. Joseph S. Osman H.K. Brooks T.J. Simpson A.J. Goodfellow I. Thorne L. Arias A. Merson L. Castle L. Howell-Jones R. Pardinaz-Solis R. Hope-Gill B. Ferri M. Grove J. Kowalski M. Stepniewska K. Lang T. Whitehead J. Olliaro P. Samai M. Horby P.W. Experimental treatment of Ebola virus disease with TKM-130803: a single-arm phase 2 clinical trial PLoS Med. 13 2016 e1001997 27093560 PMC4836798
  94. Eckwahl M.J. Sim S. Smith D. Telesnitsky A. Wolin S.L. A retrovirus packages nascent host noncoding RNAs from a novel surveillance pathway Genes Dev. 29 2015 646 657 25792599 PMC4378196
  95. Eckwahl M.J. Telesnitsky A. Wolin S.L. Host RNA packaging by retroviruses: a newly synthesized story mBio 7 2016 e02025–02015 PMC4752605 26861021
  96. Edery I. Petryshyn R. Sonenberg N. Activation of double-stranded RNA-dependent kinase (dsl) by the TAR region of HIV-1 mRNA: a novel translational control mechanism Cell 56 1989 303 312 2536299
  97. Elgar G. Vavouri T. Tuning in to the signals: noncoding sequence conservation in vertebrate genomes Trends Genet. 24 2008 344 352 18514361
  98. Emara M.M. Ivanov P. Hickman T. Dawra N. Tisdale S. Kedersha N. Hu G.F. Anderson P. Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly J. Biol. Chem. 285 2010 10959 10968 20129916 PMC2856301
  99. Erikson E. Erikson R.L. Henry B. Pace N.R. Comparison of oligonucleotides produced by RNase T1 digestion of 7 S RNA from avian and murine oncornaviruses and from uninfected cells Virology 53 1973 40 46 4350418
  100. Esnault C. Heidmann O. Delebecque F. Dewannieux M. Ribet D. Hance A.J. Heidmann T. Schwartz O. APOBEC3G cytidine deaminase inhibits retrotransposition of endogenous retroviruses Nature 433 2005 430 433 15674295
  101. Falcone V. Schweizer M. Neumann-Haefelin D. Replication of primate foamy viruses in natural and experimental hosts Rethwilm A. Foamy Viruses 2003 Springer Berlin Heidelberg Berlin, Heidelberg 161 180 12908772
  102. Farkasova H. Hron T. Paces J. Hulva P. Benda P. Gifford R.J. Elleder D. Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae) Proc. Natl. Acad. Sci. U.S.A. 114 2017 3145 3150 28280099 PMC5373376
  103. Feinberg M.B. Baltimore D. Frankel A.D. The role of Tat in the human immunodeficiency virus life cycle indicates a primary effect on transcriptional elongation Proc. Natl. Acad. Sci. U.S.A. 88 1991 4045 4049 2023953 PMC51590
  104. Feng S. Holland E.C. HIV-1 tat trans-activation requires the loop sequence within tar Nature 334 1988 165 167 3386755
  105. Fisher A.G. Feinberg M.B. Josephs S.F. Harper M.E. Marselle L.M. Reyes G. Gonda M.A. Aldovini A. Debouk C. Gallo R.C. The trans-activator gene of HTLV-III is essential for virus replication Nature 320 1986 367 371 3007995
  106. Forstemann K. Tomari Y. Du T. Vagin V.V. Denli A.M. Bratu D.P. Klattenhoff C. Theurkauf W.E. Zamore P.D. Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein PLoS Biol. 3 2005 e236 15918770 PMC1141267
  107. Frank O. Verbeke C. Schwarz N. Mayer J. Fabarius A. Hehlmann R. Leib-Mosch C. Seifarth W. Variable transcriptional activity of endogenous retroviruses in human breast cancer J. Virol. 82 2008 1808 1818 18077721 PMC2258715
  108. Frankel A.D. Young J.A. HIV-1: fifteen proteins and an RNA Annu. Rev. Biochem. 67 1998 1 25 9759480
  109. Friant S. Heyman T. Poch O. Wilhelm M. Wilhelm F.X. Sequence comparison of the Ty1 and Ty2 elements of the yeast genome supports the structural model of the tRNAiMet-Ty1 RNA reverse transcription initiation complex Yeast 13 1997 639 645 9200813
  110. Frias-Lasserre D. Non coding RNAs and viruses in the framework of the phylogeny of the genes, epigenesis and heredity Int. J. Mol. Sci. 13 2012 477 490 22312265 PMC3269699
  111. Gallo A. Locatelli F. ADARs: allies or enemies? The importance of A-to-I RNA editing in human disease: from cancer to HIV-1 Biol. Rev. Camb. Philos. Soc. 87 2012 95 110 21682836
  112. Gao Y.L. Qin L.T. Pan W. Wang Y.Q. Le Qi X. Gao H.L. Wang X.M. Avian leukosis virus subgroup J in layer chickens, China Emerg. Infect. Dis. 16 2010 1637 1638 20875300 PMC3294407
  113. Garcia E.L. Onafuwa-Nuga A. Sim S. King S.R. Wolin S.L. Telesnitsky A. Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis J. Virol. 83 2009 12526 12534 19776129 PMC2786734
  114. Gatignol A. Buckler-White A. Berkhout B. Jeang K.T. Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR Science 251 1991 1597 1600 2011739
  115. Gaudray G. Gachon F. Basbous J. Biard-Piechaczyk M. Devaux C. Mesnard J.M. The complementary strand of the human T-cell leukemia virus type 1 RNA genome encodes a bZIP transcription factor that down-regulates viral transcription J. Virol. 76 2002 12813 12822 12438606 PMC136662
  116. Geisler S. Coller J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts Nat. Rev. Mol. Cell Biol. 14 2013 699 712 24105322 PMC4852478
  117. Gifford R. Tristem M. The evolution, distribution and diversity of endogenous retroviruses Virus Genes 26 2003 291 315 12876457
  118. Giles K.E. Caputi M. Beemon K.L. Packaging and reverse transcription of snRNAs by retroviruses may generate pseudogenes RNA 10 2004 299 307 14730028 PMC1370541
  119. Gillet N. Florins A. Boxus M. Burteau C. Nigro A. Vandermeers F. Balon H. Bouzar A.B. Defoiche J. Burny A. Reichert M. Kettmann R. Willems L. Mechanisms of leukemogenesis induced by bovine leukemia virus: prospects for novel anti-retroviral therapies in human Retrovirology 4 2007 18 17362524 PMC1839114
  120. Gillet N.A. Hamaidia M. de Brogniez A. Gutierrez G. Renotte N. Reichert M. Trono K. Willems L. Bovine leukemia virus small noncoding RNAs are functional elements that regulate replication and contribute to oncogenesis in vivo PLoS Pathog. 12 2016 e1005588 27123579 PMC4849745
  121. Glazov E.A. Horwood P.F. Assavalapsakul W. Kongsuwan K. Mitchell R.W. Mitter N. Mahony T.J. Characterization of microRNAs encoded by the bovine herpesvirus 1 genome J. Gen. Virol. 91 2010 32 41 19793906
  122. Gogvadze E. Stukacheva E. Buzdin A. Sverdlov E. Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions J. Virol. 83 2009 6098 6105 19339349 PMC2687385
  123. Gosenca D. Gabriel U. Steidler A. Mayer J. Diem O. Erben P. Fabarius A. Leib-Mosch C. Hofmann W.K. Seifarth W. HERV-E-mediated modulation of PLA2G4A transcription in urothelial carcinoma PLoS One 7 2012 e49341 23145155 PMC3492278
  124. Gottwein E. Mukherjee N. Sachse C. Frenzel C. Majoros W.H. Chi J.T. Braich R. Manoharan M. Soutschek J. Ohler U. Cullen B.R. A viral microRNA functions as an orthologue of cellular miR-155 Nature 450 2007 1096 1099 18075594 PMC2614920
  125. Grassmann R. Jeang K.T. The roles of microRNAs in mammalian virus infection Biochim. Biophys. Acta 1779 2008 706 711 18549828 PMC2641032
  126. Gregory R.I. Chendrimada T.P. Cooch N. Shiekhattar R. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing Cell 123 2005 631 640 16271387
  127. Griffiths-Jones S. Grocock R.J. van Dongen S. Bateman A. Enright A.J. miRBase: microRNA sequences, targets and gene nomenclature Nucleic Acids Res. 34 2006 D140 D144 16381832 PMC1347474
  128. Griffiths-Jones S. Saini H.K. van Dongen S. Enright A.J. miRBase: tools for microRNA genomics Nucleic Acids Res. 36 2008 D154 D158 17991681 PMC2238936
  129. Groen J.N. Morris K.V. Chromatin, non-coding RNAs, and the expression of HIV Viruses 5 2013 1633 1645 23812489 PMC3738951
  130. Grossman W.J. Verbsky J.W. Tollefsen B.L. Kemper C. Atkinson J.P. Ley T.J. Differential expression of granzymes A and B in human cytotoxic lymphocyte subsets and T regulatory cells Blood 104 2004 2840 2848 15238416
  131. Guilley H. Richards K.E. Jonard G. Observations concerning the discontinuous DNAs of cauliflower mosaic virus EMBO J. 2 1983 277 282 11894938 PMC555125
  132. Gulick R.M. Mellors J.W. Havlir D. Eron J.J. Gonzalez C. McMahon D. Richman D.D. Valentine F.T. Jonas L. Meibohm A. Emini E.A. Chodakewitz J.A. Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy N. Engl. J. Med. 337 1997 734 739 9287228
  133. Guo F. Cen S. Niu M. Javanbakht H. Kleiman L. Specific inhibition of the synthesis of human lysyl-tRNA synthetase results in decreases in tRNA(Lys) incorporation, tRNA(3)(Lys) annealing to viral RNA, and viral infectivity in human immunodeficiency virus type 1 J. Virol. 77 2003 9817 9822 12941890 PMC224598
  134. Gutierrez G. Rodriguez S.M. de Brogniez A. Gillet N. Golime R. Burny A. Jaworski J.P. Alvarez I. Vagnoni L. Trono K. Willems L. Vaccination against delta-retroviruses: the bovine leukemia virus paradigm Viruses 6 2014 2416 2427 24956179 PMC4074934
  135. Haase A.D. Jaskiewicz L. Zhang H. Laine S. Sack R. Gatignol A. Filipowicz W. TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing EMBO Rep. 6 2005 961 967 16142218 PMC1369185
  136. Hagn M. Jahrsdorfer B. Why do human B cells secrete granzyme B? Insights into a novel B-cell differentiation pathway OncoImmunology 1 2012 1368 1375 23243600 PMC3518509
  137. Hakim S.T. Alsayari M. McLean D.C. Saleem S. Addanki K.C. Aggarwal M. Mahalingam K. Bagasra O. A large number of the human microRNAs target lentiviruses, retroviruses, and endogenous retroviruses Biochem. Biophys. Res. Commun. 369 2008 357 362 18282469
  138. Halwani R. Cen S. Javanbakht H. Saadatmand J. Kim S. Shiba K. Kleiman L. Cellular distribution of Lysyl-tRNA synthetase and its interaction with Gag during human immunodeficiency virus type 1 assembly J. Virol. 78 2004 7553 7564 15220430 PMC434110
  139. Han J. Lee Y. Yeom K.H. Kim Y.K. Jin H. Kim V.N. The Drosha-DGCR8 complex in primary microRNA processing Genes Dev. 18 2004 3016 3027 15574589 PMC535913
  140. Han Y.C. Park C.Y. Bhagat G. Zhang J. Wang Y. Fan J.B. Liu M. Zou Y. Weissman I.L. Gu H. microRNA-29a induces aberrant self-renewal capacity in hematopoietic progenitors, biased myeloid development, and acute myeloid leukemia J. Exp. Med. 207 2010 475 489 20212066 PMC2839143
  141. Hanger J.J. Bromham L.D. McKee J.J. O’Brien T.M. Robinson W.F. The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus J. Virol. 74 2000 4264 4272 10756041 PMC111943
  142. Harel J. Huppert J. Lacour F. Harel L. Demonstration of a ribonucleic acid of very high molecular weight in the avian myeloblastosis virus C. R. Acad. Sci. Hebd. Seances Acad. Sci. D 261 1965 2266 2268 4284934
  143. Hariharan M. Scaria V. Pillai B. Brahmachari S.K. Targets for human encoded microRNAs in HIV genes Biochem. Biophys. Res. Commun. 337 2005 1214 1218 16236258
  144. Harris R.S. Bishop K.N. Sheehy A.M. Craig H.M. Petersen-Mahrt S.K. Watt I.N. Neuberger M.S. Malim M.H. DNA deamination mediates innate immunity to retroviral infection Cell 113 2003 803 809 12809610
  145. Hartman T.R. Qian S. Bolinger C. Fernandez S. Schoenberg D.R. Boris-Lawrie K. RNA helicase A is necessary for translation of selected messenger RNAs Nat. Struct. Mol. Biol. 13 2006 509 516 16680162
  146. Hay J.M. Jones M.C. Blakebrough M.L. Dasgupta I. Davies J.W. Hull R. An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus Nucleic Acids Res. 19 1991 2615 2621 2041739 PMC328178
  147. Hendrick J.P. Wolin S.L. Rinke J. Lerner M.R. Steitz J.A. Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells Mol. Cell. Biol. 1 1981 1138 1149 6180298 PMC369740
  148. Herniou E. Martin J. Miller K. Cook J. Wilkinson M. Tristem M. Retroviral diversity and distribution in vertebrates J. Virol. 72 1998 5955 5966 9621058 PMC110400
  149. Herrera-Carrillo E. Berkhout B. Attacking HIV-1 RNA versus DNA by sequence-specific approaches: RNAi versus CRISPR-Cas Biochem. Soc. Trans. 44 2016 1355 1365 27911718
  150. Herrera-Carrillo E. Berkhout B. Novel AgoshRNA molecules for silencing of the CCR5 co-receptor for HIV-1 infection PLoS One 12 2017 e0177935 28542329 PMC5443530
  151. Herrera-Carrillo E. Harwig A. Berkhout B. Silencing of HIV-1 by AgoshRNA molecules Gene Ther. 24 2017 453 461 28553929
  152. Holzschu D.L. Martineau D. Fodor S.K. Vogt V.M. Bowser P.R. Casey J.W. Nucleotide sequence and protein analysis of a complex piscine retrovirus, walleye dermal sarcoma virus J. Virol. 69 1995 5320 5331 7636975 PMC189371
  153. Hopper A.K. Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae Genetics 194 2013 43 67 23633143 PMC3632480
  154. Hou P. Chen S. Wang S. Yu X. Chen Y. Jiang M. Zhuang K. Ho W. Hou W. Huang J. Guo D. Genome editing of CXCR4 by CRISPR/cas9 confers cells resistant to HIV-1 infection Sci. Rep. 5 2015 15577 26481100 PMC4612538
  155. Houzet L. Jeang K.T. MicroRNAs and human retroviruses Biochim. Biophys. Acta 1809 2011 686 693 21640212 PMC3177989
  156. Houzet L. Yeung M.L. de Lame V. Desai D. Smith S.M. Jeang K.T. MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals Retrovirology 5 2008 118 19114009 PMC2644721
  157. Houzet L. Klase Z. Yeung M.L. Wu A. Le S.Y. Quinones M. Jeang K.T. The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1 Nucleic Acids Res. 40 2012 11684 11696 23042677 PMC3526334
  158. Hsu P.D. Lander E.S. Zhang F. Development and applications of CRISPR-Cas9 for genome engineering Cell 157 2014 1262 1278 24906146 PMC4343198
  159. Hu W.S. Hughes S.H. HIV-1 reverse transcription Cold Spring Harb. Perspect. Med. 2 2012 PMC3475395 23028129
  160. Huang Y. Mak J. Cao Q. Li Z. Wainberg M.A. Kleiman L. Incorporation of excess wild-type and mutant tRNA(3Lys) into human immunodeficiency virus type 1 J. Virol. 68 1994 7676 7683 7966556 PMC237227
  161. Huang J. Wang F. Argyris E. Chen K. Liang Z. Tian H. Huang W. Squires K. Verlinghieri G. Zhang H. Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes Nat. Med. 13 2007 1241 1247 17906637
  162. Huarte M. Guttman M. Feldser D. Garber M. Koziol M.J. Kenzelmann-Broz D. Khalil A.M. Zuk O. Amit I. Rabani M. Attardi L.D. Regev A. Lander E.S. Jacks T. Rinn J.L. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response Cell 142 2010 409 419 20673990 PMC2956184
  163. Hull S. Boris-Lawrie K. RU5 of Mason-Pfizer monkey virus 5′ long terminal repeat enhances cytoplasmic expression of human immunodeficiency virus type 1 gag-pol and nonviral reporter RNA J. Virol. 76 2002 10211 10218 12239296 PMC136562
  164. Hussain A.I. Johnson J.A. Da Silva Freire M. Heneine W. Identification and characterization of avian retroviruses in chicken embryo-derived yellow fever vaccines: investigation of transmission to vaccine recipients J. Virol. 77 2003 1105 1111 12502826 PMC140796
  165. Hutvagner G. Simard M.J. Mello C.C. Zamore P.D. Sequence-specific inhibition of small RNA function PLoS Biol. 2 2004 E98 15024405 PMC350664
  166. Imam H. Bano A.S. Patel P. Holla P. Jameel S. The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins Sci. Rep. 5 2015 8639 25728138 PMC4345339
  167. Imamura K. Imamachi N. Akizuki G. Kumakura M. Kawaguchi A. Nagata K. Kato A. Kawaguchi Y. Sato H. Yoneda M. Kai C. Yada T. Suzuki Y. Yamada T. Ozawa T. Kaneki K. Inoue T. Kobayashi M. Kodama T. Wada Y. Sekimizu K. Akimitsu N. Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli Mol. Cell 53 2014 393 406 24507715
  168. Inlora J. Chukkapalli V. Derse D. Ono A. Gag localization and virus-like particle release mediated by the matrix domain of human T-lymphotropic virus type 1 Gag are less dependent on phosphatidylinositol-(4,5)-bisphosphate than those mediated by the matrix domain of HIV-1 Gag J. Virol. 85 2011 3802 3810 21289126 PMC3126146
  169. Inlora J. Collins D.R. Trubin M.E. Chung J.Y. Ono A. Membrane binding and subcellular localization of retroviral Gag proteins are differentially regulated by MA interactions with phosphatidylinositol-(4,5)-bisphosphate and RNA mBio 5 2014 e02202 25491356 PMC4324246
  170. Itano M.S. Arnion H. Wolin S.L. Simon S.M. Recruitment of 7SL RNA to assembling HIV-1 virus-like particles Traffic 19 2018 36 43 29044909 PMC6781622
  171. Jackson R.J. Hellen C.U. Pestova T.V. The mechanism of eukaryotic translation initiation and principles of its regulation Nat. Rev. Mol. Cell Biol. 11 2010 113 127 20094052 PMC4461372
  172. Jang S.K. Krausslich H.G. Nicklin M.J. Duke G.M. Palmenberg A.C. Wimmer E. A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation J. Virol. 62 1988 2636 2643 2839690 PMC253694
  173. Janssen H.L.A. Reesink H.W. Lawitz E.J. Zeuzem S. Rodriguez-Torres M. Patel K. van der Meer A.J. Patick A.K. Chen A. Zhou Y. Persson R. King B.D. Kauppinen S. Levin A.A. Hodges M.R. Treatment of HCV infection by targeting MicroRNA N. Engl. J. Med. 368 2013 1685 1694 23534542
  174. Jarmuz A. Chester A. Bayliss J. Gisbourne J. Dunham I. Scott J. Navaratnam N. An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22 Genomics 79 2002 285 296 11863358
  175. Javanbakht H. Halwani R. Cen S. Saadatmand J. Musier-Forsyth K. Gottlinger H. Kleiman L. The interaction between HIV-1 Gag and human lysyl-tRNA synthetase during viral assembly J. Biol. Chem. 278 2003 27644 27651 12756246
  176. Jones C.P. Saadatmand J. Kleiman L. Musier-Forsyth K. Molecular mimicry of human tRNALys anti-codon domain by HIV-1 RNA genome facilitates tRNA primer annealing RNA 19 2013 219 229 23264568 PMC3543088
  177. Jopling C.L. Yi M. Lancaster A.M. Lemon S.M. Sarnow P. Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA Science 309 2005 1577 1581 16141076
  178. Jopling C.L. Schutz S. Sarnow P. Position-dependent function for a tandem microRNA miR-122-binding site located in the hepatitis C virus RNA genome Cell Host Microbe 4 2008 77 85 18621012 PMC3519368
  179. Judware R. Li J. Petryshyn R. Inhibition of the dsRNA-dependent protein kinase by a peptide derived from the human immunodeficiency virus type 1 Tat protein J. Interferon Res. 13 1993 153 160 8099600
  180. Jurado K.A. Wang H. Slaughter A. Feng L. Kessl J.J. Koh Y. Wang W. Ballandras-Colas A. Patel P.A. Fuchs J.R. Kvaratskhelia M. Engelman A. Allosteric integrase inhibitor potency is determined through the inhibition of HIV-1 particle maturation Proc. Natl. Acad. Sci. U.S.A. 110 2013 8690 8695 23610442 PMC3666754
  181. Kao S.Y. Calman A.F. Luciw P.A. Peterlin B.M. Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product Nature 330 1987 489 493 2825027
  182. Karn J. Stoltzfus C.M. Transcriptional and posttranscriptional regulation of HIV-1 gene expression Cold Spring Harb. Perspect. Med. 2 2012 a006916 22355797 PMC3281586
  183. Kawaji H. Nakamura M. Takahashi Y. Sandelin A. Katayama S. Fukuda S. Daub C.O. Kai C. Kawai J. Yasuda J. Carninci P. Hayashizaki Y. Hidden layers of human small RNAs BMC Genom. 9 2008 157 PMC2359750 18402656
  184. Kawakami T. Sherman L. Dahlberg J. Gazit A. Yaniv A. Tronick S.R. Aaronson S.A. Nucleotide sequence analysis of equine infectious anemia virus proviral DNA Virology 158 1987 300 312 3035786
  185. Kedersha N.L. Rome L.H. Isolation and characterization of a novel ribonucleoprotein particle: large structures contain a single species of small RNA J. Cell Biol. 103 1986 699 709 2943744 PMC2114306
  186. Kedzierska K. Crowe S.M. The role of monocytes and macrophages in the pathogenesis of HIV-1 infection Curr. Med. Chem. 9 2002 1893 1903 12369874
  187. Keene S.E. Telesnitsky A. cis-Acting determinants of 7SL RNA packaging by HIV-1 J. Virol. 86 2012 7934 7942 22593161 PMC3421668
  188. Keene S.E. King S.R. Telesnitsky A. 7SL RNA is retained in HIV-1 minimal virus-like particles as an S-domain fragment J. Virol. 84 2010 9070 9077 20610725 PMC2937644
  189. Keith G. Heyman T. Heterogeneities in vertebrate tRNAs(Trp) avian retroviruses package only as a primer the tRNA(Trp) lacking modified m2G in position 7 Nucleic Acids Res. 18 1990 703 710 2156227 PMC330316
  190. Khvorova A. Reynolds A. Jayasena S.D. Functional siRNAs and miRNAs exhibit strand bias Cell 115 2003 209 216 14567918
  191. Kickhoefer V.A. Liu Y. Kong L.B. Snow B.E. Stewart P.L. Harrington L. Rome L.H. The Telomerase/vault-associated protein TEP1 is required for vault RNA stability and its association with the vault particle J. Cell Biol. 152 2001 157 164 11149928 PMC2193651
  192. Kincaid R.P. Burke J.M. Sullivan C.S. RNA virus microRNA that mimics a B-cell oncomiR Proc. Natl. Acad. Sci. U.S.A. 109 2012 3077 3082 22308400 PMC3286953
  193. Kincaid R.P. Chen Y. Cox J.E. Rethwilm A. Sullivan C.S. Noncanonical microRNA (miRNA) biogenesis gives rise to retroviral mimics of lymphoproliferative and immunosuppressive host miRNAs mBio 5 2014 e00074 24713319 PMC3993851
  194. Kinoshita S. Chen B.K. Kaneshima H. Nolan G.P. Host control of HIV-1 parasitism in T cells by the nuclear factor of activated T cells Cell 95 1998 595 604 9845362
  195. Kiss T. Biogenesis of small nuclear RNPs J. Cell Sci. 117 2004 5949 5951 15564372
  196. Kissil J.L. Deiss L.P. Bayewitch M. Raveh T. Khaspekov G. Kimchi A. Isolation of DAP3, a novel mediator of interferon-gamma-induced cell death J. Biol. Chem. 270 1995 27932 27936 7499268
  197. Kitazono M. Sumizawa T. Takebayashi Y. Chen Z.S. Furukawa T. Nagayama S. Tani A. Takao S. Aikou T. Akiyama S. Multidrug resistance and the lung resistance-related protein in human colon carcinoma SW-620 cells J. Natl. Cancer Inst. 91 1999 1647 1653 10511592
  198. Kitazono M. Okumura H. Ikeda R. Sumizawa T. Furukawa T. Nagayama S. Seto K. Aikou T. Akiyama S. Reversal of LRP-associated drug resistance in colon carcinoma SW-620 cells Int. J. Cancer 91 2001 126 131 11149411
  199. Klase Z. Kale P. Winograd R. Gupta M.V. Heydarian M. Berro R. McCaffrey T. Kashanchi F. HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR BMC Mol. Biol. 8 2007 63 17663774 PMC1955452
  200. Klase Z.A. Sampey G.C. Kashanchi F. Retrovirus infected cells contain viral microRNAs Retrovirology 10 2013 15 23391025 PMC3571942

200 of 423 shown

Cited by

Sorted by citations

Authors
Duchon, A. A., & Musier-Forsyth, K.
Affiliations
The Ohio State University (US)
Venue
Retrovirus-Cell Interactions
Publisher
Elsevier
Published
2018
Pages
421-478
OpenAlex
W2885050688
Cited by
1
References
16
Citations by year
2019: 1
FWCI
0.45
Type
book chapter
Language
en
Open access
Locations
  • Elsevier eBooks (publishedVersion)
  • PubMed Central (publishedVersion)
Topics
  • Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
Keywords
non-coding RNA, retroviral replication, retroviral life cycle, viral RNA packaging, long non-coding RNA, endogenous retroviruses, RNA interference, antiviral innate immunity, viral assembly, tRNA, vault RNA, genome editing

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review