Cited by 47

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

Bone protein extraction without demineralization using principles from hydroxyapatite chromatography

Cleland, Timothy P., Vashishth, Deepak·2015·Analytical Biochemistry

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.ab.2014.12.006

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Strategies for analyzing bone that do not require full demineralization have been pioneered and adopted, including protein extraction with ammonium bicarbonate and ammonium phosphate.

    “Strategies for analyzing bone that do not require full demineralization of the bone mineral have also been pioneered and adopted, including protein extraction with ammonium bicarbonate (166) and ammonium phosphate (167).”

    From Ancient protein analysis in archaeology (2021) · cites this paper as [167]

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 37

  1. Tang, 2007, Effects of non-enzymatic glycation on cancellous bone fragility, Bone, 40, 1144, 10.1016/j.bone.2006.12.056 · DOI
  2. Vashishth, 2009, Advanced glycation end-products and bone fractures, IBMS BoneKEy, 6, 268, 10.1138/20090390 · DOI
  3. Karim, 2012, Heterogeneous glycation of cancellous bone and its association with bone quality and fragility, PLoS ONE, 7, e35047, 10.1371/journal.pone.0035047 · DOI
  4. Sroga, 2012, Effects of bone matrix proteins on fracture and fragility in osteoporosis, Curr. Osteoporos. Rep., 10, 141, 10.1007/s11914-012-0103-6 · DOI
  5. Saito, 2010, Collagen cross-links as a determinant of bone quality: a possible explanation for bone fragility in aging, osteoporosis, and diabetes mellitus, Osteoporos. Int., 21, 195, 10.1007/s00198-009-1066-z · DOI
  6. Cappellini, 2012, Proteomic analysis of a Pleistocene mammoth femur reveals more than one hundred ancient bone proteins, J. Proteome Res., 11, 917, 10.1021/pr200721u · DOI
  7. Orlando, 2013, Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse, Nature, 499, 74, 10.1038/nature12323 · DOI · Paper page
  8. Schweitzer, 2007, Analyses of soft tissue from Tyrannosaurus Rex suggest the presence of protein, Science, 316, 277, 10.1126/science.1138709 · DOI
  9. Schweitzer, 2009, Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis, Science, 324, 626, 10.1126/science.1165069 · DOI · Paper page
  10. Schweitzer, 2013, Molecular analyses of dinosaur osteocytes support the presence of endogenous molecules, Bone, 52, 414, 10.1016/j.bone.2012.10.010 · DOI
  11. Schweitzer, 2002, Identification of immunoreactive material in mammoth fossils, J. Mol. Evol., 55, 696, 10.1007/s00239-002-2365-6 · DOI
  12. Buckley, 2009, Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, Rapid Commun. Mass Spectrom., 23, 3843, 10.1002/rcm.4316 · DOI · Paper page
  13. Buckley, 2010, Distinguishing between archaeological sheep and goat bones using a single collagen peptide, J. Archaeol. Sci., 37, 13, 10.1016/j.jas.2009.08.020 · DOI · Paper page
  14. Buckley, 2011, Collagen fingerprinting of archaeological bone and teeth remains from Domuztepe, South Eastern Turkey, Archaeol. Anthropol. Sci., 3, 271, 10.1007/s12520-011-0066-z · DOI
  15. Buckley, 2011, Mammoth and Mastodon collagen sequences: survival and utility, Geochim. Cosmochim. Acta, 75, 2007, 10.1016/j.gca.2011.01.022 · DOI
  16. Richter, 2011, Fish ’n chips: ZooMS peptide mass fingerprinting in a 96 well plate format to identify fish bone fragments, J. Archaeol. Sci., 38, 1502, 10.1016/j.jas.2011.02.014 · DOI
  17. Buckley, 2013, A molecular phylogeny of Plesiorycteropus reassigns the extinct mammalian order “Bibymalagasia”, PLoS ONE, 8, e59614, 10.1371/journal.pone.0059614 · DOI
  18. Wadsworth, 2014, Proteome degradation in fossils: Investigating the longevity of protein survival in ancient bone, Rapid Commun. Mass Spectrom., 28, 605, 10.1002/rcm.6821 · DOI
  19. Ostrom, 2006, Unraveling the sequence and structure of the protein osteocalcin from a 42ka fossil horse, Geochim. Cosmochim. Acta, 70, 2034, 10.1016/j.gca.2006.01.004 · DOI
  20. Buckley, 2008, Comparing the survival of osteocalcin and mtDNA in archaeological bone from four European sites, J. Archaeol. Sci., 35, 1756, 10.1016/j.jas.2007.11.022 · DOI
  21. Ostrom, 2000, New strategies for characterizing ancient proteins using matrix-assisted laser desorption ionization mass spectrometry, Geochim. Cosmochim. Acta, 64, 1043, 10.1016/S0016-7037(99)00381-6 · DOI
  22. Nielsen-Marsh, 2002, Sequence preservation of osteocalcin protein and mitochondrial DNA in bison bones older than 55ka, Geology, 30, 1099, 10.1130/0091-7613(2002)030<1099:SPOOPA>2.0.CO;2 · DOI
  23. Fan, 2005, Functional proteome of bones in rats with osteoporosis following ovariectomy, Life Sci., 76, 2893, 10.1016/j.lfs.2004.10.059 · DOI
  24. Pastorelli, 2005, Proteome analysis for the identification of in vivo estrogen-regulated proteins in bone, Proteomics, 5, 4936, 10.1002/pmic.200401325 · DOI · Paper page
  25. Salmon, 2013, Proteomic analysis of human dental cementum and alveolar bone, J. Proteomics, 91, 544, 10.1016/j.jprot.2013.08.016 · DOI
  26. Gerstenfeld, 1994, Selective extractability of noncallagenous proteins from chicken bone, Calcif. Tissue Int., 55, 230, 10.1007/BF00425880 · DOI
  27. Freitag, 2012, Isolation and purification of recombinant proteins, antibodies, and plasmid DNA with hydroxyapatite chromatography, Biotechnol. J., 7, 90, 10.1002/biot.201100015 · DOI
  28. Hou, 2011, Classification of protein binding in hydroxyapatite chromatography: synergistic interactions on the molecular scale, Anal. Chem., 83, 3709, 10.1021/ac103336h · DOI
  29. Sroga, 2011, Biochemical characterization of major bone-matrix proteins using nanoscale-size bone samples and proteomics methodology, Mol. Cell. Proteomics, 10, 10.1074/mcp.M110.006718 · DOI
  30. Rappsilber, 2007, Protocol for micro-purification, enrichment, pre-fractionation, and storage of peptides for proteomics using StageTips, Nat. Protoc., 2, 1896, 10.1038/nprot.2007.261 · DOI · Paper page
  31. Franzén, 1984, Extraction and purification of proteoglycans from mature bovine bones, Biochem. J., 224, 47, 10.1042/bj2240047 · DOI
  32. Franzén, 1985, Isolation and characterization of two sialoproteins present only in bone calcified matrix, Biochem. J., 232, 715, 10.1042/bj2320715 · DOI
  33. Gundberg, 1984, Osteocalcin: isolation, characterization, and detection, 516, 10.1016/0076-6879(84)07036-1 · DOI
  34. Goldberg, 1994, Purification of mineralized tissue-associated osteopontin, J. Tissue Culture Methods, 16, 211, 10.1007/BF01540653 · DOI
  35. Hauschka, 1989, Osteocalcin–hydroxyapatite interaction in the extracellular organic matrix of bone, Anatom. Rec., 224, 180, 10.1002/ar.1092240208 · DOI
  36. Tang, 2006, A computational approach toward label-free protein quantification using predicted peptide detectability, Bioinformatics, 22, e481, 10.1093/bioinformatics/btl237 · DOI
  37. McLachlin, 2001, Analysis of phosphorylated proteins and peptides by mass spectrometry, Curr. Opin. Chem. Biol., 5, 591, 10.1016/S1367-5931(00)00250-7 · DOI

Cited by

Sorted by citations

Metadata

Authors
Cleland, T. P., & Vashishth, D.
Venue
Analytical Biochemistry
Publisher
Elsevier BV
Published
2015-03
Volume
472
Pages
62-66
ISSN
0003-2697
Cited by
47
References
3
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review