Mapping the path forward to next generation algal technologies: workshop on understanding the rules of life and complexity in algal systems

Algae-bacteria interactions: Evolution, ecology and emerging applications

Ramanan, R., Kim, B.-H., Cho, D.-H., Oh, H.-M., & Kim, H.-S. (2016) · Biotechnology Advances · doi:10.1016/j.biotechadv.2015.12.003 · Cited by 1,301 · see citing works

Engineering microbial consortia: a new frontier in synthetic biology

Brenner, K., You, L., & Arnold, F. H. (2008) · Trends in biotechnology · doi:10.1016/j.tibtech.2008.05.004 · Cited by 1,017 · see citing works

Challenges in microbial ecology: building predictive understanding of community function and dynamics

Stefanie Widder, A., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., et al. (2016) · The ISME Journal · doi:10.1038/ismej.2016.45 · Cited by 742 · see citing works

Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator

Ajjawi, I., Verruto, J., Aqui, M., Soriaga, L. B., Coppersmith, J. L., Kwok, K., Peach, L., Orchard, E. D., Kalb, R., Xu, W., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3865 · Cited by 472 · see citing works

Ensembl Genomes 2020—enabling non-vertebrate genomic research

Howe, K., Contreras‐Moreira, B., Silva, N. H. D., Maslen, G. L., Akanni, W. A., Allen, J. E., Álvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz890 · Cited by 468 · see citing works

A Hundred Years of Dunaliella Research: 1905–2005

Oren, A. (2005) · Saline Systems · doi:10.1186/1746-1448-1-2 · Cited by 400 · see citing works

Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2

Yu, J., Liberton, M., Cliften, P. F., Head, R. D., Jacobs, J., Smith, R. D., Koppenaal, D., Brand, J. J., & Pakrasi, H. B. (2015) · Scientific Reports · doi:10.1038/srep08132 · Cited by 372 · see citing works

Role of Rhizobium, a plant growth promoting bacterium, in enhancing algal biomass through mutualistic interaction

Kim, B.-H., Ramanan, R., Cho, D., Oh, H., & Kim, H.-S. (2014) · Biomass and Bioenergy · doi:10.1016/j.biombioe.2014.07.015 · Cited by 268 · see citing works

Microalgae-associated bacteria play a key role in the flocculation of Chlorella vulgaris

Lee, J., Cho, D.-H., Ramanan, R., Kim, B.-H., Oh, H.-M., & Kim, H.-S. (2013) · Bioresource Technology · doi:10.1016/j.biortech.2012.11.130 · Cited by 238 · see citing works

SteadyCom: Predicting microbial abundances while ensuring community stability

Chan, S. H. J., Simons, M., & Maranas, C. D. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005539 · Cited by 233 · see citing works

PhycoCosm, a comparative algal genomics resource

Grigoriev, I. V., Hayes, R. D., Calhoun, S., Kamel, B., Wang, A., Ahrendt, S. R., Dusheyko, S., Nikitin, R., Mondo, S. J., Salamov, A. A., et al. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa898 · Cited by 200 · see citing works

Emerging Priorities for Microbiome Research

Cullen, C. M., Aneja, K. K., Beyhan, S., Cho, C. E., Woloszynek, S., Convertino, M., McCoy, S. J., Zhang, Y., Anderson, M. Z., Alvarez‐Ponce, D., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00136 · Cited by 193 · see citing works

Industrial‐strength ecology: trade‐offs and opportunities in algal biofuel production

Shurin, J. B., Abbott, R. L., Deal, M. S., Kwan, G. T., Litchman, E., McBride, R. C., Mandal, S., & Smith, V. H. (2013) · Ecology Letters · doi:10.1111/ele.12176 · Cited by 176 · see citing works

Isolation and characterization of a novel chytrid species (phylum Blastocladiomycota), parasitic on the green alga Haematococcus

Hoffman, Y., Aflalo, C., Zarka, A., Gutman, J., James, T. Y., & Boussiba, S. (2007) · Mycological Research · doi:10.1016/j.mycres.2007.09.002 · Cited by 145 · see citing works

Microalgae with Artificial Intelligence: A Digitalized Perspective on Genetics, Systems and Products

Teng, S. Y., Yew, G. Y., Sukačová, K., Show, P. L., Máša, V., & Chang, J.-S. (2020) · Biotechnology Advances · doi:10.1016/j.biotechadv.2020.107631 · Cited by 145 · see citing works

Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions

Zúñiga, C., Li, C., Huelsman, T., Levering, J., Zielinski, D. C., McConnell, B. O., Long, C. P., Knoshaug, E. P., Guarnieri, M. T., Antoniewicz, M. R., et al. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.16.00593 · Cited by 129 · see citing works

Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973

Ungerer, J. L., Wendt, K. E., Hendry, J. I., Maranas, C. D., & Pakrasi, H. B. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1814912115 · Cited by 128 · see citing works

Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia

Said, S. B., & Or, D. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01125 · Cited by 117 · see citing works

Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth

Zúñiga, C., Li, T., Guarnieri, M. T., Jenkins, J. P., Li, C., Bingol, K., Kim, Y., Betenbaugh, M. J., & Zengler, K. (2020) · Nature Communications · doi:10.1038/s41467-020-17612-8 · Cited by 100 · see citing works

Computational Approaches for Integrative Analysis of the Metabolome and Microbiome

Chong, J., & Xia, J. (2017) · Metabolites · doi:10.3390/metabo7040062 · Cited by 99 · see citing works

SBML Level 3 Package: Flux Balance Constraints version 2

Olivier, B. G., & Bergmann, F. T. (2018) · Journal of Integrative Bioinformatics · doi:10.1515/jib-2017-0082 · Cited by 94 · see citing works

Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo

Dahlin, L. R., Gerritsen, A. T., Henard, C. A., Van Wychen, S., Linger, J. G., Kunde, Y., Hovde, B. T., Starkenburg, S. R., Posewitz, M. C., & Guarnieri, M. T. (2019) · Communications Biology · doi:10.1038/s42003-019-0620-2 · Cited by 86 · see citing works

Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview

Sen, P., & Orešič, M. (2019) · Metabolites · doi:10.3390/metabo9020022 · Cited by 83 · see citing works

High-light selection produces a fast-growing Picochlorum celeri

Weissman, J. C., Likhogrud, M., Thomas, D. C., Fang, W., Karns, D. A. J., Chung, J. W., Nielsen, R., & Posewitz, M. C. (2018) · Algal Research · doi:10.1016/j.algal.2018.09.024 · Cited by 66 · see citing works

Methods for automated genome-scale metabolic model reconstruction

Faria, J. P., Rocha, M., Rocha, I., & Henry, C. S. (2018) · Biochemical Society Transactions · doi:10.1042/bst20170246 · Cited by 64 · see citing works

The state of algal genome quality and diversity

Hanschen, E. R., & Starkenburg, S. R. (2020) · Algal Research · doi:10.1016/j.algal.2020.101968 · Cited by 61 · see citing works

EFFECTS OF GRAZER RICHNESS AND COMPOSITION ON ALGAL BIOMASS IN A CLOSED AND OPEN MARINE SYSTEM

Matthiessen, B., Gamfeldt, L., Jonsson, P. R., & Hillebrand, H. (2007) · Ecology · doi:10.1890/0012-9658(2007)88[178:eograc]2.0.co;2 · Cited by 51 · see citing works

Genome editing using Cas9-RNA ribonucleoprotein complexes in the high-productivity marine alga Picochlorum celeri

Krishnan, A., Cano, M., Burch, T. A., Weissman, J. C., & Posewitz, M. C. (2020) · Algal Research · doi:10.1016/j.algal.2020.101944 · Cited by 41 · see citing works

Development of the high-productivity marine microalga, Picochlorum renovo, as a photosynthetic protein secretion platform

Dahlin, L. R., & Guarnieri, M. T. (2021) · Algal Research · doi:10.1016/j.algal.2021.102197 · Cited by 14 · see citing works

Integrated Regulatory and Metabolic Models

Covert, M. W. (2006) · Elsevier eBooks · doi:10.1016/b978-012088786-6/50029-0 · Cited by 3 · see citing works

Implications of Pond Reliability on the Techno-Economic and Life Cycle Environmental Impacts of Algal Biofuels

Quiroz, D., McGowen, J., & Quinn, J. C. (2024) · Journal of Cleaner Production · doi:10.1016/j.jclepro.2024.143178 · Cited by 7 · see citing works

Susquehanna Chorale Spring Concert "Roots and Wings"

Hawkins, D. (2017)

Business—Bioproducts in the Bioeconomy

Roos, A. (2016) · Environmental footprints and eco-design of products and processes · doi:10.1007/978-981-10-0655-5_6 · Cited by 5 · see citing works

Microbial Technology to Produce Sustainable Food Bioproducts: Insights into Submerged Fermentation

Cordero-Soto, I. N., Contreras-Hernández, M. G., González‐Herrera, S. M., et al. (2024) · Apple Academic Press eBooks · doi:10.1201/9781003561453-2 · Cited by 2 · see citing works

Report of 2014 International Bioenergy & Bioproducts Conference

Tamaki, M., & Umeguchi, N. (2015) · JAPAN TAPPI JOURNAL · doi:10.2524/jtappij.69.630

Noteworthy issues for producing and transforming bioproducts by electrodalysis

Wang, X., Wang, Y., Zhang, X., Jiang, C., & Xu, T. (2014) · Journal of Chemical Technology & Biotechnology · doi:10.1002/jctb.4415 · Cited by 2 · see citing works