Influence of buffalo manure, compost, vermicompost and biochar amendments on bacterial and viral communities in soil and adjacent aquatic systems
Abstract
Vermicompost and biochar amendments are management practices which may contribute to sustainable agroecosystems by reducing dependence on inorganic fertilizers. However, little is known about their impacts on soil microorganisms and their transfer and evolution in connected aquatic systems. The aim of this study was to determine the influence of organic manure (buffalo manure, compost or vermicompost) and biochar amendments on bacterial and viral properties in soil and water. A three year experiment was carried out with terrestrial mesocosms which were used to test the effect of organic matter amendment on maize growth. In the last year of the experiment, runoff and infiltration waters from the terrestrial mesocosms were transferred to aquatic mesocosms. Organic fertilization improved soil properties (higher C, N content and pHH2O) and as a consequence increased soil bacterial and viral abundance. Bacterial diversity (Shannon ‘H’ and richness ‘S’ indices calculated from DGGE fingerprint) was also enhanced after the continuous application of organic amendments. Compared with compost, vermicompost reduced viral abundance and S but similar H and bacterial abundance were observed. The pHH2O, C content and bacterial and viral abundance increased in the aquatic mesocosms following organic fertilization. As a consequence, bacterial and viral diversity also increased in the water, although no differences were found between compost and vermicompost. Biochar increased soil bacterial abundance for the mineral fertilizer treatment but did not influence bacterial and viral abundance in water. However, the combination of biochar and vermicompost led to an increase of viruses in soil and a reduction of bacteria in water. Similarity dendrograms from the DGGE banding patterns showed that the structure of bacterial communities was mainly influenced by the fertilizer treatments in soil but by the presence of biochar in water. In conclusion, this study demonstrated that the nature of the organic amendment has important consequences on both soil and water microbial abundance and diversity.
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In both blending with compost and co-composting, the porous biochar adsorptive surface sites are charged with nutrients, thereby stimulating microbial colonization, improving biochar surface reactivity through accelerated oxidative aging and promoting dissolved organic carbon (DOC) adsorption and coating.
“In both cases, the porous biochar adsorptive surface sites are charged with nutrients [18,19], thereby stimulating microbial colonization [20], improving biochar surface reactivity through accelerated oxidative aging [21,22] and promoting dissolved organic carbon (DOC) adsorption and coating [18,[23][24][25].”
From Fourfold increase in pumpkin yield in response to low-dosage root zone application of urine-enhanced biochar to a fertile tropical soil (2015) · cites this paper as [20]
Cites
Muyzer, G., de Waal, E. C., & Uitterlinden, A. G. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.3.695-700.1993 · Cited by 11,455 · see citing works
World Reference Base for Soil Resources
Driessen, P., Nachtergaele, F., Spaargaren, O. C., & Deckers, J. (2005) · CRC Press eBooks · doi:10.1201/noe0849338304.ch410 · Cited by 7,248 · see citing works
Soil taxonomy—a basic system of soil classification for making and interpreting soil surveys
Nachtergaele, F. (2001) · Geoderma · doi:10.1016/s0016-7061(00)00097-5 · Cited by 5,463 · see citing works
Biochar for environmental management: science and technology
(2009) · Choice Reviews Online · doi:10.5860/choice.47-0296 · Cited by 2,947 · see citing works
Suttle, C. A. (2005) · Nature · doi:10.1038/nature04160 · Cited by 2,186 · see citing works
Atkinson, C. J., Fitzgerald, J. D., & Hipps, N. A. (2010) · Plant and Soil · doi:10.1007/s11104-010-0464-5 · Cited by 2,154 · see citing works
Ecology of prokaryotic viruses
Weinbauer, M. G. (2003) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2003.08.001 · Cited by 1,776 · see citing works
Long-term effects of organic amendments on soil fertility. A review
Diacono, M., & Montemurro, F. (2010) · Agronomy for Sustainable Development · doi:10.1051/agro/2009040 · Cited by 1,436 · see citing works
Steiner, C., Teixeira, W., Lehmann, J., Nehls, T., de Macedo, J. L. V., Blum, W., & Zech, W. (2007) · Plant and Soil · doi:10.1007/s11104-007-9193-9 · Cited by 1,402 · see citing works
Øvreås, L., Forney, L. J., Daae, F. L., & Torsvik, V. L. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.9.3367-3373.1997 · Cited by 1,243 · see citing works
Soil Taxonomy, A Basic System of Soil Classification for Making and Interpreting Soil Surveys
&NA; (1977) · Soil Science · doi:10.1097/00010694-197704000-00011 · Cited by 1,164 · see citing works
Lal, R. (2006) · Land Degradation & Development · doi:10.1002/ldr.696 · Cited by 894 · see citing works
Anderson, C. R., Condron, L. M., Clough, T. J., Fiers, M., Stewart, A., Hill, R. A., & Sherlock, R. R. (2011) · Pedobiologia · doi:10.1016/j.pedobi.2011.07.005 · Cited by 768 · see citing works
Are viruses driving microbial diversification and diversity?
Weinbauer, M. G., & Rassoulzadegan, F. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00539.x · Cited by 642 · see citing works
Dempster, D. N., Gleeson, D. B., Solaiman, Z. M., Jones, D. L., & Murphy, D. V. (2012) · Plant and Soil · doi:10.1007/s11104-011-1067-5 · Cited by 509 · see citing works
Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments
Khodadad, C. L. M., Zimmerman, A. R., Green, S. J., Uthandi, S., & Foster, J. S. (2010) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2010.11.005 · Cited by 419 · see citing works
Chaudhry, V., Rehman, A., Mishra, A., Chauhan, P. S., & Nautiyal, C. S. (2012) · Microbial Ecology · doi:10.1007/s00248-012-0025-y · Cited by 361 · see citing works
Gutiérrez-Miceli, F. A., Santiago-Borraz, J., Molina, J. A. M., et al. (2007) · Bioresource Technology · doi:10.1016/j.biortech.2006.02.032 · Cited by 346 · see citing works
Castaldi, S., Riondino, M., Baronti, S., Esposito, F. R., Marzaioli, R., Rutigliano, F. A., Vaccari, F. P., & Miglietta, F. (2011) · Chemosphere · doi:10.1016/j.chemosphere.2011.08.031 · Cited by 338 · see citing works
Dissolved organic carbon (DOC) as a parameter of compost maturity
Zmora-Nahum, S., Markovitch, O., Tarchitzky, J., & Chen, Y. (2005) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2005.03.013 · Cited by 327 · see citing works
Soil Erosion and Carbon Dynamics
Roose, E. J., Lal, R., Feller, C. L., Barthès, B., & Stewart, B. A. (2005) · CRC Press eBooks · doi:10.1201/9780203491935 · Cited by 318 · see citing works
Abundance and Diversity of Viruses in Six Delaware Soils
Williamson, K. E., Radosevich, M. A., & Wommack, K. E. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.6.3119-3125.2005 · Cited by 310 · see citing works
Soil erosion and carbon dynamics
Lal, R. (2004) · Soil and Tillage Research · doi:10.1016/j.still.2004.09.002 · Cited by 294 · see citing works
Ecology of viruses in soils: Past, present and future perspectives
Kimura, M., Jia, Z., Nakayama, N., et al. (2008) · Soil Science & Plant Nutrition · doi:10.1111/j.1747-0765.2007.00197.x · Cited by 281 · see citing works
Arancon, N. Q., Edwards, C. A., Bierman, P. M., et al. (2005) · Pedobiologia · doi:10.1016/j.pedobi.2005.02.001 · Cited by 270 · see citing works
Vivas, A., Moreno, B., García‐Rodríguez, S., et al. (2008) · Bioresource Technology · doi:10.1016/j.biortech.2008.08.014 · Cited by 236 · see citing works
Key role of selective viral‐induced mortality in determining marine bacterial community composition
Bouvier, T. C., & del Giorgio, P. A. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01137.x · Cited by 226 · see citing works
Self-citationSchauer, M., Massana, R., & Pedrós‐Alió, C. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00726.x · Cited by 206 · see citing works
Microbes, Molecules, and Marine Ecosystems
Azam, F., & Worden, A. Z. (2004) · Science · doi:10.1126/science.1093892 · Cited by 181 · see citing works
Sampling Natural Viral Communities from Soil for Culture-Independent Analyses
Williamson, K. E., Wommack, K. E., & Radosevich, M. A. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.11.6628-6633.2003 · Cited by 177 · see citing works
Soil Fertility and Production Potential
Lehmann, J. C., Kern, D. C., German, L., Mccann, J., Martins, G. C., & Moreira, A. (2006) · Kluwer Academic Publishers eBooks · doi:10.1007/1-4020-2597-1_6 · Cited by 174 · see citing works
Walshe, G. E., Pang, L., Flury, M., et al. (2009) · Water Research · doi:10.1016/j.watres.2009.11.034 · Cited by 165 · see citing works
Yasir, M., Aslam, Z., Kim, S. W., et al. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.04.015 · Cited by 151 · see citing works
Fracchia, L., Dohrmann, A. B., Martinotti, M. G., et al. (2006) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-005-0228-y · Cited by 145 · see citing works
Management of biomass residues generated from palm oil mill: Vermicomposting a sustainable option
Singh, R. P., Embrandiri, A., Ibrahim, M. H., & Esa, N. (2010) · Resources Conservation and Recycling · doi:10.1016/j.resconrec.2010.11.005 · Cited by 133 · see citing works
Suppression of insect pest populations and damage to plants by vermicomposts
Arancon, N. Q., Galvis, P., & Edwards, C. A. (2004) · Bioresource Technology · doi:10.1016/j.biortech.2004.10.004 · Cited by 126 · see citing works
Podwojewski, P., Orange, D., Jouquet, P., et al. (2008) · CATENA · doi:10.1016/j.catena.2008.03.013 · Cited by 111 · see citing works
Self-citationSoil zoology for sustainable development in the 21st century
Hanna, S. H. S., & Mikhaïl, W. Z. A. (2004) · Cited by 110 · see citing works
Oliver, D. M., Clegg, C. D., Heathwaite, A. L., et al. (2007) · Water Air & Soil Pollution · doi:10.1007/s11270-007-9451-8 · Cited by 103 · see citing works
Bardgett, R. D., Anderson, J. M., Behan‐Pelletier, V. M., et al. (2001) · Ecosystems · doi:10.1007/s10021-001-0020-5 · Cited by 91 · see citing works
Biogeographical patterns of soil bacterial communities
Dequiedt, S. S., Thioulouse, J., Jolivet, C. C., Saby, N., Lelièvre, M., Maron, P., Martin, M. P., Prévost‐Bouré, N. C., Toutain, B. B., Arrouays, D., et al. (2009) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2009.00040.x · Cited by 89 · see citing works
Ngo, P. T., Rumpel, C., Dignac, M., Billou, D., Duc, T. T., & Pascal Jouquet, B. (2010) · Ecological Engineering · doi:10.1016/j.ecoleng.2010.11.011 · Cited by 86 · see citing works
Ngo, P.-T., Rumpel, C., Doan, T. T., et al. (2012) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2012.02.037 · Cited by 83 · see citing works
Self-citationMouchet, M. A., Bouvier, C., Bouvier, T. C., Troussellier, M., Escalas, A., & Mouillot, D. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01241.x · Cited by 80 · see citing works
Self-citationLee, S., Lee, H., Kim, S.-J., et al. (2009) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2009.10.061 · Cited by 77 · see citing works
Ranjard, L., Dequiedt, S. S., Jolivet, C. C., Saby, N., Thioulouse, J., Harmand, J., Loisel, P., Rapaport, A., Fall, S., Simonet, P., et al. (2009) · Agronomy for Sustainable Development · doi:10.1051/agro/2009033 · Cited by 77 · see citing works
Pascal Jouquet, B., Plumere, T., Doan, T. T., Rumpel, C., Duc, T. T., & Orange, D. (2010) · Applied Soil Ecology · doi:10.1016/j.apsoil.2010.07.002 · Cited by 77 · see citing works
Self-citationAbove-ground earthworm casts affect water runoff and soil erosion in Northern Vietnam
Jouquet, P., Podwojewski, P., Bottinelli, N., et al. (2008) · CATENA · doi:10.1016/j.catena.2007.12.006 · Cited by 71 · see citing works
Self-citationFernández-Gómez, M. J., Nogales, R., Insam, H., et al. (2011) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2011.11.045 · Cited by 45 · see citing works
Amossé, J., Bettarel, Y., Bouvier, C., et al. (2013) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2013.07.007 · Cited by 44 · see citing works
Self-citationChitinophaga terrae sp. nov., isolated from soil
Kim, M. K., & Jung, H.-Y. (2007) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64964-0 · Cited by 43 · see citing works
Fernández-Gómez, M. J., Nogales, R., Insam, H., Romero, E., & Goberna, M. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.07.113 · Cited by 42 · see citing works
Effects of Viruses and Predators on Prokaryotic Community Composition
Jardillier, L. E., Bettarel, Y., Richardot, M., et al. (2005) · Microbial Ecology · doi:10.1007/s00248-005-5030-y · Cited by 40 · see citing works
Self-citationBlack carbon in wildfire‐affected shrubland Mediterranean soils
Rovira, P., Duguy, B., & Vallejo, V. R. (2008) · Journal of Plant Nutrition and Soil Science · doi:10.1002/jpln.200700216 · Cited by 40 · see citing works
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- Authors
- Doan, T. T., Bouvier, C., Bettarel, Y., Bouvier, T., Henry-des-Tureaux, T., Janeau, J. L., Lamballe, P., Nguyen, B. V., & Jouquet, P.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Groupe de Recherches et d'Echanges Technologiques (FR)
- Vietnam Academy of Agricultural Sciences (VN)
- Venue
- Applied Soil Ecology
- Publisher
- Elsevier BV
- Published
- 2014-01
- Volume
- 73
- Pages
- 78-86
- ISSN
- 0929-1393 (ISSN-L)
- OpenAlex
- W2094763499
- Cited by
- 101
- References
- 54
- Citations by year
- 2026: 1 · 2025: 7 · 2024: 6 · 2023: 11 · 2022: 14 · 2021: 10 · 2020: 4 · 2019: 11 · 2018: 6 · 2017: 5 · 2016: 10 · 2015: 10 · 2014: 6
- FWCI
- 12.54
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Applied Soil Ecology (publishedVersion)
- Funders
- Institut de Recherche pour le Développement
- Centre National de la Recherche Scientifique
- Topics
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Soil Carbon and Nitrogen Dynamics
- Life Sciences › Agricultural and Biological Sciences › Soil Science › Agricultural Science and Fertilization
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- buffalo manure, compost, vermicompost, biochar, soil microbial communities, soil viruses, bacterial diversity, viral abundance, organic fertilization, soil water quality, runoff, infiltration, maize growth, microbial community structure, soil organic matter
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