A new view of the fish gut microbiome: Advances from next-generation sequencing

A human gut microbial gene catalogue established by metagenomic sequencing

MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823

Sequencing technologies – the next generation

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Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness

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Evolution of mammals and their gut microbes

Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747

Next-Generation DNA Sequencing Methods

Mardis, E. R. (2008) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.9.081307.164359 · Cited by 2,469

Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology

Muyzer, G., & Smalla, K. (1998) · Antonie van Leeuwenhoek · doi:10.1023/a:1000669317571 · Cited by 2,065

Removing Noise From Pyrosequenced Amplicons

Quince, C., Lanzén, A., Davenport, R. J., & Turnbaugh, P. J. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-38 · Cited by 1,634

Comparison of Next-Generation Sequencing Systems

Liu, L., Li, Y., Li, S., Hu, N., He, Y., Pong, R., Lin, D., Lü, L., & Law, M. (2012) · BioMed Research International · doi:10.1155/2012/251364 · Cited by 1,605

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

Větrovský, T., & Baldrián, P. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057923 · Cited by 1,201

A plant-based diet supplemented with Hermetia illucens alone or in combination with poultry by-product meal: one step closer to sustainable aquafeeds for European seabass

Pleić, I. L., Bušelić, I., Messina, M., Hrabar, J., Žuvić, L., Talijančić, I., Žužul, I., Pavelin, T., Anđelić, I., Pleadin, J., et al. (2022) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-022-00725-z · Cited by 26

Substrate degradation pathways, conserved functions and community composition of the hindgut microbiota in the herbivorous marine fish Kyphosus sydneyanus

Stevenson, S. J. R., Lee, K. C. Y., Handley, K. M., Angert, E. R., White, W. L., & Clements, K. D. (2022) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2022.111283 · Cited by 26

Integrated Transcriptome and 16S rDNA Analyses Reveal That Transport Stress Induces Oxidative Stress and Immune and Metabolic Disorders in the Intestine of Hybrid Yellow Catfish (Tachysurus fulvidraco♀ × Pseudobagrus vachellii♂)

Zheng, T., Tao, Y., Lu, S., Qiang, J., & Xu, P. (2022) · Antioxidants · doi:10.3390/antiox11091737 · Cited by 27

Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture

Cui, J., Xiao, M., Liu, M., Wang, Z., Liu, F., Guo, L., Meng, H., Zhang, H., Yang, J.-Y., Deng, D., et al. (2017) · Journal of Applied Microbiology · doi:10.1111/jam.13555 · Cited by 26

Surgeonfish feces increase microbial opportunism in reef-building corals

Ezzat, L., Lamy, T., Maher, R. L., Munsterman, K. S., Landfield, K., Schmeltzer, E. R., Gaulke, C. A., Burkepile, D. E., & Thurber, R. L. V. (2019) · Marine Ecology Progress Series · doi:10.3354/meps13119 · Cited by 27

Gut Microbiome Analyses of Wild Migratory Freshwater Fish (Megalobrama terminalis) Through Geographic Isolation

Liu, Y., Li, Y., Li, J., Zhou, Q., & Li, X. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.858454 · Cited by 25

Effects of Salinity on the Growth, Physiological Characteristics, and Intestinal Microbiota of the Echiura Worm (Urechis unicinctus)

Zheng, Q., Wang, Y., Chen, J., Li, Y., Zhao, F., Liu, D., Wei, M., Kong, D., Chen, Z., Zhang, Z., et al. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.912023 · Cited by 25

Effect of long-term temperature stress on the intestinal microbiome of an invasive snail

Li, S., Qian, Z., Gao, S., Shen, W., Li, X., Li, H., & Chen, L. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.961502 · Cited by 26

Legacy Metal Contamination is Reflected in the Fish Gut Microbiome in an Urbanised Estuary

Suzzi, A. L., Stat, M., MacFarlane, G. R., Seymour, J. R., Williams, N. L. R., Gaston, T. F., Alam, M. R., & Huggett, M. J. (2022) · Environmental Pollution · doi:10.1016/j.envpol.2022.120222 · Cited by 25

Assessing effects of guar gum viscosity on the growth, intestinal flora, and intestinal health of Micropterus salmoides

Liu, Y., Zhou, H., Fan, J., Huang, H., Deng, J., & Tan, B. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.09.220 · Cited by 25

Core microbiome profiles and their modification by environmental, biological, and rearing factors in aquaculture hatcheries

Najafpour, B., Pinto, P. I. S., Climent, E., Martínez-Blanch, J. F., Canário, A. V. M., Moutou, K. A., & Power, D. M. (2023) · Marine Pollution Bulletin · doi:10.1016/j.marpolbul.2023.115218 · Cited by 27

Biological filters regulate water quality, modulate health status, immune indices and gut microbiota of freshwater crayfish, marron (Cherax cainii, Austin, 2002)

Foysal, M. J., Fotedar, R. K., Tay, C. Y., & Gupta, S. K. (2020) · Chemosphere · doi:10.1016/j.chemosphere.2020.125821 · Cited by 24

Influence of environmental factors and bacterial community diversity in pond water on health of Chinese perch through Gut Microbiota change

Li, J., Fang, L., Liang, X., Guo, W., Lv, L., & Li, L. (2021) · Aquaculture Reports · doi:10.1016/j.aqrep.2021.100629 · Cited by 24

Effects of chronic exposure to the fungicide vinclozolin on gut microbiota community in an aquatic turtle

Kang, C.-Q., Meng, Q.-Y., Dang, W., Shao, Y.-J., & Lu, H. (2022) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2022.113621 · Cited by 24

Impact of environmental micropollutants and diet composition on the gut microbiota of wild european eels (Anguilla anguilla)

Bertucci, A., Hoede, C., Dassié, É. P., Gourvès, P.-Y., Suin, A., Menach, K. L., Budzinski, H., & Daverat, F. (2022) · Environmental Pollution · doi:10.1016/j.envpol.2022.120207 · Cited by 23

Historical DNA Metabarcoding of the Prey and Microbiome of Trematomid Fishes Using Museum Samples

Heindler, F. M., Christiansen, H., Frédérich, B., Dettaı̈, A., Lepoint, G., Maes, G. E., de Putte, A. V., & Volckaert, F. A. M. (2018) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2018.00151 · Cited by 24

Intestinal microbiome and its potential functions in bighead carp ( Aristichthys nobilis ) under different feeding strategies

Li, X., Zhu, Y., Ringø, E., Wang, X., Gong, J., & Yang, D. (2018) · PeerJ · doi:10.7717/peerj.6000 · Cited by 24

Probiotic Efficacy in Aquaculture: The Role of Technospore® (Bacillus coagulans) in Improving Nile Tilapia (Oreochromis niloticus) Performance and Disease Resistance: a Study on Gut Health, Immunological Response, and Gene Expression

Omar, A. A. E.-D., Gado, M. S., Kandel, H. E., Farrag, F. A., & Shukry, M. (2024) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-024-10279-3 · Cited by 23

16S amplicon sequencing of the gastrointestinal microbiota of Cirrhinus reba and isolation of an autochthonous probiotic using culture based approaches

Chattaraj, S., Chattaraj, M., Mitra, D., Ganguly, A., Thatoi, H., & MOHAPATRA, P. K. D. (2024) · Systems Microbiology and Biomanufacturing · doi:10.1007/s43393-024-00285-5 · Cited by 23

Modulation of gut microbiota composition and predicted metabolic capacity after nutritional programming with a plant-rich diet in Atlantic salmon (Salmo salar): insights across developmental stages

Tawfik, M. M., Lorgen-Ritchie, M., Król, E., McMillan, S., Norambuena, F., Bolnick, D. I., Douglas, A., Tocher, D. R., Betancor, M. B., & Martin, S. A. M. (2024) · Animal Microbiome · doi:10.1186/s42523-024-00321-8 · Cited by 23

Water and microbial monitoring technologies towards the near future space exploration

Amalfitano, S., Levantesi, C., Copetti, D., Stefani, F., Locantore, I., Guarnieri, V., Lobascio, C., Bersani, F., Giacosa, D., Detsis, E., et al. (2020) · Water Research · doi:10.1016/j.watres.2020.115787 · Cited by 25

The influence of diet on the microbiota of live-feed rotifers (Brachionus plicatilis) used in commercial fish larviculture

Turgay, E., Steinum, T. M., Eryalçın, K. M., Yardımcı, R. E., & Karataş, S. (2020) · FEMS Microbiology Letters · doi:10.1093/femsle/fnaa020 · Cited by 23

Impact of a yeast‐based dietary supplement on the intestinal microbiome of rainbow trout,Oncorhynchus mykiss

Hines, I. S., Ferguson, C. S., Bushman, T. J., Gatlin, D. M., Jensen, R. V., Smith, S. A., Kuhn, D. D., & Stevens, A. M. (2020) · Aquaculture Research · doi:10.1111/are.15011 · Cited by 23

Soy protein concentrate effects on gut microbiota structure and digestive physiology of Totoaba macdonaldi

Soriano, E. L., Zavala, R. C., López, L. M., Gómez‐Gil, B., Tovar‐Ramírez, D., Sanchez, S., Canales, K., & Galavíz, M. A. (2021) · Journal of Applied Microbiology · doi:10.1111/jam.15269 · Cited by 23

The Effect of the Microalgae Chlorella vulgaris on the Gut Microbiota of Juvenile Nile Tilapia (Oreochromis niloticus) Is Feeding-Time Dependent

Huang, Z., Gao, J., Peng, C., Song, J., Xie, Z., Jia, J., Li, H., Zhao, S., Liang, Y., & Gong, B. (2023) · Microorganisms · doi:10.3390/microorganisms11041002 · Cited by 23

Impact of Diets Containing Plant Raw Materials as Fish Meal and Fish Oil Replacement on Rainbow Trout (Oncorhynchus mykiss), Gilthead Sea Bream (Sparus aurata), and Common Carp (Cyprinus carpio) Freshness

Grigorakis, K., Kogiannou, D. A. A., Corraze, G. R., Pérez‐Sánchez, J., Adorjan, Á., & Sándor, Z. J. (2018) · Journal of Food Quality · doi:10.1155/2018/1717465 · Cited by 23

Alterations of stool metabolome, phenome, and microbiome of the marine fish, red sea bream, Pagrus major, following exposure to phenanthrene: A non-invasive approach for exposure assessment

Hano, T., Ito, M., Ito, K., & Uchida, M. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.141796 · Cited by 23

Endosymbiotic pathogen-inhibitory gut bacteria in three Indian Major Carps under polyculture system: A step toward making a probiotics consortium

Ghosh, K., Mukherjee, A., Dutta, D., Banerjee, S., Breines, E. M., Hareide, E., & Ringø, E. (2020) · Aquaculture and Fisheries · doi:10.1016/j.aaf.2020.03.009 · Cited by 22

Co-modulation of Liver Genes and Intestinal Microbiome of Largemouth Bass Larvae (Micropterus salmoides) During Weaning

Zhao, L., He, K., Luo, J., Sun, J., Liao, L., Tang, X., Liu, Q., & Yang, S. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.01332 · Cited by 22

Gut Microbes Reveal Pseudomonas Medicates Ingestion Preference via Protein Utilization and Cellular Homeostasis Under Feed Domestication in Freshwater Drum, Aplodinotus grunniens

Song, C., Wen, H., Liu, G., Ma, X., Lv, G., Wu, N., Chen, J., Xue, M., Li, H., & Xu, P. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.861705 · Cited by 22

Intestinal flora and immunity response to different viscous diets in juvenile largemouth bass, Micropterus salmoides

Liu, Y., Cao, Y., Zhang, Y., Fan, J., Zhou, H., Huang, H., Jiang, W., Zhang, W., Deng, J., & Tan, B. (2022) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2022.06.054 · Cited by 22

Relationship between gut microbiota and Chinook salmon (Oncorhynchus tshawytscha) health and growth performance in freshwater recirculating aquaculture systems

Zhao, R., Symonds, J. E., Walker, S. P., Steiner, K., Carter, C. G., Bowman, J. P., & Nowak, B. F. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1065823 · Cited by 22

Treatment With High-Hydrostatic Pressure, Activated Film Packaging With Thymol Plus Enterocin AS-48, and Its Combination Modify the Bacterial Communities of Refrigerated Sea Bream (Sparus aurata) Fillets

Blázquez, I. O., Burgos, M. J. G., Pulido, R. P., Gálvez, A., & Lucas, R. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00314 · Cited by 22

Bacterial diversity in gut of large yellow croaker Larimichthys crocea and black sea bream Sparus macrocephalus reared in an inshore net pen

Zhang, C., Zheng, X., Ren, X., Li, Y., & Wang, Y. (2019) · Fisheries Science · doi:10.1007/s12562-019-01349-5 · Cited by 22

A Comparison of Bacteria Cultured from Unionid Mussel Hemolymph between Stable Populations in the Upper Mississippi River Basin and Populations Affected by a Mortality Event in the Clinch River

Leis, E. M., Erickson, S., Waller, D. L., Richard, J. C., & Goldberg, T. L. (2019) · Freshwater Mollusk Biology and Conservation · doi:10.31931/fmbc.v22i2.2019.70-80 · Cited by 22

Effects of different stocking densities and feeding frequencies on growth, physiological and biochemical indexes, and intestinal microflora of largemouth bass (Micropterus salmoides) under land-based round pond

Xie, Y., Yang, X.-M., Kaneko, G., Liang, J., Wen, L., Li, Y.-J., Ao, Q.-W., Huang, L., Li, P., Min, W., et al. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740385 · Cited by 22

Intestinal Microbiota in Large Yellow Croaker, Larimichthys crocea , at Different Ages

Wei, N., Wang, C., Xiao, S., Huang, W., Lin, M., Yan, Q., & Ma, Y. (2017) · Journal of the World Aquaculture Society · doi:10.1111/jwas.12463 · Cited by 21

A Comparative Metagenomics Study on Gastrointestinal Microbiota in Amphibious Mudskippers and Other Vertebrate Animals

Yi, Y., Liang, L., Wang, Z., Ai, P., You, X., Bian, C., Shi, Q., & Dong, B. (2019) · Animals · doi:10.3390/ani9090660 · Cited by 21

Alternative Feed Raw Materials Modulate Intestinal Microbiota and Its Relationship with Digestibility in Yellowtail Kingfish Seriola lalandi

Dam, C. T. M., Booth, M. A., Pirozzi, I., Salini, M., Smullen, R. P., Ventura, T., & Elizur, A. (2020) · Fishes · doi:10.3390/fishes5020014 · Cited by 21

Dead or alive: microbial viability treatment reveals both active and inactive bacterial constituents in the fish gut microbiota

Legrand, T. P. R. A., Wos‐Oxley, M. L., Wynne, J. W., Weyrich, L. S., & Oxley, A. P. A. (2021) · Journal of Applied Microbiology · doi:10.1111/jam.15113 · Cited by 21

Metagenomic landscape of taxonomy, metabolic potential and resistome of Sardinella longiceps gut microbiome

Johny, T. K., Puthusseri, R. M., & Bhat, S. G. (2021) · Archives of Microbiology · doi:10.1007/s00203-021-02675-y · Cited by 21

Tenets in Microbial Endocrinology: A New Vista in Teleost Reproduction

Haque, R., Das, I. I., Sawant, P. B., Chadha, N. K., Sahoo, L., Kumar, R., & Sundaray, J. K. (2022) · Frontiers in Physiology · doi:10.3389/fphys.2022.871045 · Cited by 22

Transcriptome, intestinal microbiome and histomorphology profiling of differences in the response of Chinese sea bass (Lateolabrax maculatus) to Aeromonas hydrophila infection

Pan, C., Zhu, Y., Cao, K., Li, J., Wang, S., Zhu, J., Zeng, X., Zhang, H., & Qin, Z. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1103412 · Cited by 21

Microbiome patterns reveal the transmission of pathogenic bacteria in hilsa fish (Tenualosa ilisha) marketed for human consumption in Bangladesh

Foysal, M. J., Momtaz, F., Kawser, A. Q. M. R., Chaklader, M. R., Siddik, M. A. B., Lamichhane, B., Tay, C. Y., Rahman, M. M., & Fotedar, R. K. (2019) · Journal of Applied Microbiology · doi:10.1111/jam.14257 · Cited by 20

The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment

Minich, J. J., Power, C., Melanson, M., Knight, R. D., Webber, C., Rough, K., Bott, N. J., Nowak, B. F., & Allen, E. E. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.02015 · Cited by 19

Effects of settleable versus unsettled biofloc removal strategy on aquaculture system performance and microbial community

Zhu, Z. S., Tan, J., Abakari, G., Hu, X., Tan, H., Liu, W., & Luo, G. (2024) · Aquaculture · doi:10.1016/j.aquaculture.2024.741553 · Cited by 20

Understanding the role of microbes in health and disease of farmed aquatic organisms

Thompson, C. C., Wasielesky, W., Landuci, F. S., Lima, M. S., Bachá, L., Perazzolo, L. M., Lourenço‐Marques, C., Soares, F., Pousão‐Ferreira, P., Hanson, L. A., et al. (2024) · Marine Life Science & Technology · doi:10.1007/s42995-024-00248-8 · Cited by 21

Modulation of Gilthead Sea Bream Gut Microbiota by a Bioactive Egg White Hydrolysate: Interactions Between Bacteria and Host Lipid Metabolism

Naya-Català, F., Wiggers, G. A., Piazzon, M. C., López-Martínez, M. I., Estensoro, I., Calduch-Giner, J. À., Martínez‐Cuesta, M. C., Requena, T., Sitjà‐Bobadilla, A., Miguel, M., et al. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.698484 · Cited by 19

Integrated Omics Approaches Revealed the Osmotic Stress-Responsive Genes and Microbiota in Gill of Marine Medaka

Lai, K. P., Zhu, P., Boncan, D. A. T., Yang, L., Leung, C. C. T., Ho, J. C. H., Lin, X., Chan, T., Kong, R. Y. C., & Tse, W. K. F. (2022) · mSystems · doi:10.1128/msystems.00047-22 · Cited by 20

Gut microbiota of wild fish as reporters of compromised aquatic environments sleuthed through machine learning

Turner, J. W., Cheng, X., Saferin, N., Yeo, J., Yang, T., & Joe, B. (2022) · Physiological Genomics · doi:10.1152/physiolgenomics.00002.2022 · Cited by 20

Gut and Gill-Associated Microbiota of the Flatfish European Plaice (Pleuronectes platessa): Diversity, Metabolome and Bioactivity against Human and Aquaculture Pathogens

Ghotbi, M., Kelting, O., Blümel, M., & Taşdemir, D. (2022) · Marine Drugs · doi:10.3390/md20090573 · Cited by 20

Freshwater transfer affected intestinal microbiota with correlation to cytokine gene expression in Asian sea bass

Morshed, S. M., Chen, Y., Lin, C., Chen, Y., & Lee, T. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1097954 · Cited by 21

The microbiota knows: handling-stress and diet transform the microbial landscape in the gut content of rainbow trout in RAS

Suhr, M., Fichtner‐Grabowski, F., Seibel, H., Bang, C., Franke, A., Schulz, C., & Hornburg, S. C. (2023) · Animal Microbiome · doi:10.1186/s42523-023-00253-9 · Cited by 20

Elucidating the structure, and composition of bacterial symbionts in the gut regions of wood-feeding termite, Coptotermes formosanus and their functional profile towards lignocellulolytic systems

Dar, M. A., Xie, R., Jing, L., Xu, Q., Ali, S., Pandit, R. S., Shaha, C. M., & Sun, J. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1395568 · Cited by 20

Composition of the microbial communities in the gastrointestinal tract of perch (Perca fluviatilis L. 1758) and cestodes parasitizing the perch digestive tract

Kashinskaya, E. N., Simonov, E., Izvekova, G. I., Николаевич, П. А., Andree, K. B., & Solovyev, M. M. (2019) · Journal of Fish Diseases · doi:10.1111/jfd.13096 · Cited by 20

Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion

McCauley, M., German, D. P., Lujan, N. K., & Jackson, C. R. (2020) · Ecology and Evolution · doi:10.1002/ece3.6413 · Cited by 20

Partial fishmeal protein replacement with peptides from swine blood modulates the nutritional status, immune response, and intestinal microbiota of hybrid groupers (female Epinephelus fuscoguttatus× male E. lanceolatus)

He, Y., Guo, X., Tan, B., Dong, X., Yang, Q., Liu, H., Zhang, S., & Chi, S. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.736154 · Cited by 20

Effect of fatty acid-enriched black soldier fly larvae meal combined with chitinase on the metabolic processes of Nile tilapia

Agbohessou, P. S., Mandiki, R., Mes, W., Blanquer, A., Gérardy, M., Garigliany, M., Lambert, J., Cambier, P., Tokpon, N., Lalèyé, P., et al. (2024) · British Journal Of Nutrition · doi:10.1017/s0007114523003008 · Cited by 19

Effects of dietary Radix Rehmanniae Preparata polysaccharides on the digestive enzymes, morphology, microbial communities and mucosal barrier function of the intestine of Luciobarbus capito

Wu, C., Shan, J., Feng, J., Wang, J., Qin, C., Nie, G., & Ding, C. (2020) · Aquaculture Research · doi:10.1111/are.14448 · Cited by 19

Tracking spoilage bacteria in the tuna microbiome

Gadoin, E., Desnues, C., Bouvier, T. C., d’Orbcastel, E. R., Auguet, J., Crochemore, S., Adingra, A., & Bettarel, Y. (2022) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiac110 · Cited by 19

Effects of Hermetia illucens larvae meal on the Pacific white shrimp (Litopenaeus vannamei) revealed by innate immunity and 16S rRNA gene sequencing analysis

Chen, Y., Zhuang, Z., Liu, J., Wang, Z., Guo, Y., Chen, A., Chen, B., Zhao, W., & Niu, J. (2023) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2023.101080 · Cited by 19

Comparison of the gill and gut microbiomes of common carp (Cyprinus carpio) and zebrafish (Danio rerio) and their RAS environment

Mes, W., Lücker, S., Jetten, M. S. M., Siepel, H., Gorissen, M., & van Kessel, M. A. H. J. (2023) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2023.165212 · Cited by 19

Role of Gastrointestinal Microbiota from Crucian Carp in Microbial Transformation and Estrogenicity Modification of Novel Plastic Additives

Hou, R., Zhang, S., Huang, Q., Lin, L., Li, H., Li, J., Liu, S., Sun, C., & Xu, X. (2023) · Environmental Science & Technology · doi:10.1021/acs.est.3c03595 · Cited by 19

The Marine Fish Gut Microbiome as a Source of Novel Bacteriocins

Uniacke-Lowe, S., Stanton, C., Hill, C., & Ross, R. P. (2024) · Microorganisms · doi:10.3390/microorganisms12071346 · Cited by 23

Analysis of the fecal microbiome in Kemp’s ridley sea turtles Lepidochelys kempii undergoing rehabilitation

Samuelson, M., Pulis, E. E., Ray, C., Arias, C., Samuelson, D. R., Mattson, E., & Solangi, M. A. (2020) · Endangered Species Research · doi:10.3354/esr01043 · Cited by 18

Effect of feed restriction and refeeding on body condition, digestive functionality and intestinal microbiota in rainbow trout (Oncorhynchus mykiss)

Messina, M., Iacumin, L., Pascon, G., Tulli, F., Tibaldi, E., & Cardinaletti, G. (2023) · Fish Physiology and Biochemistry · doi:10.1007/s10695-023-01170-z · Cited by 18

Effects of Aspergillus-meal prebiotic diet on the growth performance, health status and gut microbiota of Asian seabass, Lates calcarifer

Huang, K., Lee, J., Hu, Y.-F., Ballantyne, R., & Liu, C. (2023) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2023.108696 · Cited by 19

Evidence of a divided nutritive function in rainbow Trout (Oncorhynchus mykiss) midgut and hindgut microbiomes by whole shotgun metagenomic approach

Betiku, O. C., Yeoman, C. J., Gaylord, T. G., Ishaq, S. L., Duff, G. C., & Sealey, W. M. (2023) · Aquaculture Reports · doi:10.1016/j.aqrep.2023.101601 · Cited by 18

Microbiome analysis reveals potential for modulation of gut microbiota through polysaccharide-based prebiotic feeding in Oreochromis niloticus (Linnaeus, 1758)

Bera, A. K., Chowdhury, H., Ghatak, S., Malick, R. C., Chakraborty, N., Chakraborty, H. J., Swain, H. S., Hassan, M. A., & Das, B. K. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2023.1168284 · Cited by 18

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Wang, S., Meng, X.-Z., Dai, Y., Zhang, J.-H., Shen, Y., Xu, X., Wang, R., & Li, J. (2021) · Comparative Biochemistry and Physiology Part D Genomics and Proteomics · doi:10.1016/j.cbd.2021.100789 · Cited by 18

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Pan, W., Qin, C., Zuo, T., Yu, G., Zhu, W., Ma, H., & Xi, S. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.634651 · Cited by 17

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Cheutin, M., Villéger, S., Hicks, C. C., Robinson, J. P. W., Graham, N. A. J., Marconnet, C., Restrepo‐Ortiz, C. X., Bettarel, Y., Bouvier, T. C., & Auguet, J. (2021) · Microorganisms · doi:10.3390/microorganisms9081711 · Cited by 17

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Fortes‐Silva, R., Oliveira, I. E., Vieira, V. P., Winkaler, E. U., Guerra-Santos, B., & Cerqueira, R. B. (2015) · Biological Rhythm Research · doi:10.1080/09291016.2015.1094972 · Cited by 17

Gut microbiota and gut morphology of gilthead sea bream (Sparus aurata) juveniles are not affected by chromic oxide as digestibility marker

Serra, C. R., Júnior, F. O. D. M., Couto, A., Oliva‐Teles, A., & Enes, P. (2018) · Aquaculture Research · doi:10.1111/are.13596 · Cited by 16

Sustained changes in digestive physiology and microbiome across sequential generations of zebrafish fed different diets

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Molecular trophic markers in marine food webs and their potential use for coral ecology

Leal, M. C., & Ferrier‐Pagès, C. (2016) · Marine Genomics · doi:10.1016/j.margen.2016.02.003 · Cited by 16

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High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus)

Méndez-Pérez, R., García-López, R., Bautista-López, J. S. B.-L., Vázquez-Castellanos, J. F., Álvarez‐González, C. A., Peña‐Marín, E. S., Baltierra-Trejo, E., Schroeder, R. H. A., Domínguez-Rodríguez, V. I., Valdes, C. E. M., et al. (2020) · Latin American Journal of Aquatic Research · doi:10.3856/vol48-issue3-fulltext-2419 · Cited by 16

Opportunities for microbiome research to enhance farmed freshwater fish quality and production

Parata, L., Sammut, J., & Egan, S. (2021) · Reviews in Aquaculture · doi:10.1111/raq.12556 · Cited by 16

Glutamine alleviates β-conglycinin-induced enteritis in juvenile hybrid groupers Epinephelus fuscoguttatus♀ × Epinephelus lanceolatus♂ by suppressing the MyD88/NF-κB pathway

He, Y., Liang, J., Dong, X., Yang, Q., Liu, H., Zhang, S., Chi, S., & Tan, B. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737735 · Cited by 16

Solea senegalensis Bacterial Intestinal Microbiota Is Affected by Low Dietary Inclusion of Ulva ohnoi

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Sodium alginate supplementation modulates gut microbiota, health parameters, growth performance and growth‐related gene expression in Malaysian Mahseer Tor tambroides

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The Chelating Mineral on Organic Acid Salts Modulates the Dynamics and Richness of the Intestinal Microbiota of a Silver Catfish Rhamdia quelen

Pereira, S. A., Jesus, G. F. A., Pereira, G. D. V., da Silva, B. C., de Sá, L. S., Martins, M. L., & Mouriño, J. L. P. (2020) · Current Microbiology · doi:10.1007/s00284-020-01962-z · Cited by 16

Fire in the belly: Stress and antibiotics induce dysbiosis and inflammation in the gut of common carp

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Influences of the alcoholic extract of Artemisia annua on gastrointestinal microbiota and performance of Nile tilapia

Soares, M. P., Cardoso, I. L., de Araújo, F. E., Angelis, C. F. D., Mendes, R., Mendes, L. W., Fernandes, M. N., Jonsson, C. M., de Queiroz, S. C. D. N., Duarte, M. C. T., et al. (2022) · Aquaculture · doi:10.1016/j.aquaculture.2022.738521 · Cited by 15

Integrated analysis of how gender and body weight affect the intestinal microbial diversity of Gymnocypris chilianensis

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Enhancement of Soybean Meal Alters Gut Microbiome and Influences Behavior of Farmed Atlantic Salmon (Salmo salar)

Leeper, A., Sauphar, C., Berlizot, B., Ladurée, G., Koppe, W., Knobloch, S., Skírnisdóttir, S., Björnsdóttir, R., Øverland, M., & Benhaïm, D. (2023) · Animals · doi:10.3390/ani13162591 · Cited by 15

Systematic literature review identifying bacterial constituents in the core intestinal microbiome of rainbow trout ( Oncorhynchus mykiss )

Hines, I. S., Marshall, M. A., Smith, S. A., Kuhn, D. D., & Stevens, A. M. (2023) · Aquaculture Fish and Fisheries · doi:10.1002/aff2.127 · Cited by 15

Glutamine improves growth and intestinal health in juvenile hybrid groupers fed high-dose glycinin

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Effects of Stocking Density on Intestinal Health of Juvenile Micropterus salmoides in Industrial Aquaponics

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Fish Gut Microbiome: A Primer to an Emerging Discipline in the Fisheries Sciences

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Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics

Tarnecki, A. M., Burgos, F. A., Ray, C. L., & Arias, C. R. (2017) · Journal of Applied Microbiology · doi:10.1111/jam.13415 · Cited by 446

The community structure of the fish intestinal microbiome

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Insights on Fish Gut Microbiome - A Review

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