A practical data processing workflow for multi-OMICS projects

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Saliva: diagnostics and therapeutic perspectives

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ProMiner: rule-based protein and gene entity recognition

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Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio vulgaris : A Quantitative Analysis

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Revolutionizing medicine in the 21st century through systems approaches

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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

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Posttranscriptional expression regulation: what determines translation rates?

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Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

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Data merging for integrated microarray and proteomic analysis

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Quantification of the variation in percentage identity for protein sequence alignments

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Integrated analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: zero-inflated Poisson regression models to predict abundance of undetected proteins

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Gene therapy from the perspective of systems biology.

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Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins

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Analysis of Dynamic Protein Expression Data

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Automated Calculation of Unique PeptideSequencesforUnambiguous Identification of HighlyHomologousProteins byMassSpectrometry

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Statistical Evaluation of Methods for the Analysis of Dynamic Protein Expression Data From a Tumor Study

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Harnessing Systems Biology Approaches to Engineer Functional Microvascular Networks

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Using machine learning approaches for multi-omics data analysis: A review

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Integrated omics: tools, advances and future approaches

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Machine learning and integrative analysis of biomedical big data

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Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines

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Discovery and Validation of Clinical Biomarkers of Cancer: A Review Combining Metabolomics and Proteomics

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Beyond Metabolomics: A Review of Multi-Omics-Based Approaches

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Analysis of Disease-Associated Protein Expression Using Quantitative Proteomics—Fibulin-5 Is Expressed in Association with Hepatic Fibrosis

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Pathway analysis of complex diseases for GWAS, extending to consider rare variants, multi-omics and interactions

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A review on omics-based biomarkers discovery for Alzheimer's disease from the bioinformatics perspectives: Statistical approach vs machine learning approach

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A comprehensive survey of the approaches for pathway analysis using multi-omics data integration

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Biomarker research with prospective study designs for the early detection of cancer

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Hepatitis B Virus Particles Activate Toll‐Like Receptor 2 Signaling Initially Upon Infection of Primary Human Hepatocytes

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KIR2DL3+NKG2A− natural killer cells are associated with protection from productive hepatitis C virus infection in people who inject drugs

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Comparative transcriptome and proteome provide new insights into the regulatory mechanisms of the postharvest deterioration of Pleurotus tuoliensis fruitbodies during storage

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Krüppel-like factor 6 is a transcriptional activator of autophagy in acute liver injury

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Recent progress in the use of ‘omics technologies in brassicaceous vegetables

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Integrating -Omics: Systems Biology as Explored Through C. elegans Research

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Identification of Novel Biomarker Candidates for the Immunohistochemical Diagnosis of Cholangiocellular Carcinoma

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Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.)

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Skin Multi-Omics-Based Interactome Analysis: Integrating the Tissue and Mucus Exuded Layer for a Comprehensive Understanding of the Teleost Mucosa Functionality as Model of Study

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Multidimensional Integrative Genomics Approaches to Dissecting Cardiovascular Disease

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Omics and Multi-Omics Analysis for the Early Identification and Improved Outcome of Patients with Psoriatic Arthritis

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BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication

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Radiomic and radiogenomic modeling for radiotherapy: strategies, pitfalls, and challenges

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Classical MALDI-MS Versus CE-Based ESI-MS Proteomic Profiling in Urine for Clinical Applications

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Multi-Omics Research Trends in Sepsis: A Bibliometric, Comparative Analysis Between the United States, the European Union 28 Member States, and China

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The Application of Omics Technologies to Study Axon Regeneration and CNS Repair

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Proteomics

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DNA microarray integromics analysis platform

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Selecting the right therapeutic target for kidney disease

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A study on multi-omic oscillations in Escherichia coli metabolic networks

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Hepatic expression of proteasome subunit alpha type‐6 is upregulated during viral hepatitis and putatively regulates the expression of ISG 15 ubiquitin‐like modifier, a proviral host gene in hepatitis C virus infection

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Data provenance management for bioinformatics workflows using NoSQL database systems in a cloud computing environment

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Using Omics in Chronic Pain Conditions to Delineate Mechanisms and Provide New Therapeutic Strategies

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Bioinformatics Workflows With NoSQL Database in Cloud Computing

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Updates on resources, software tools, and databases for plant proteomics in 2016–2017

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From Exercise Physiology to Network Physiology of Exercise

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Tissue-based quantitative proteome analysis of human hepatocellular carcinoma using tandem mass tags

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Global Proteomics of Extremophilic Fungi: Mission Accomplished?

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Bioinformatics Methods and Tools to Advance Clinical Care

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Deconstructing depression by machine learning: the POKAL-PSY study

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Simplifying the Proteome: Analytical Strategies for Improving Peak Capacity

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Computational paradigms for antimicrobial resistance prediction: integrating multi-omics, structural modeling, and foundation artificial intelligence systems

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Vetinformatics for Identification of Drug Targets via Integrating Multi-omics Data

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An Association Study of DNA Methylation and Gene Expression in Angelman Syndrome: A Bioinformatics Approach

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Tantalizing dilemma in risk prediction from disease scoring statistics

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Advanced Computational Methods, NGS Tools, and Software for Mammalian Systems Biology

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A clustering method for next-generation sequences of bacterial genomes through multiomics data mapping

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The application of systems biology to biomanufacturing

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Study on Massive Vegetation Data Processing of FY-3 Based on RAM (h)

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Omics approaches for biotic, abiotic, and quality traits improvement in potato (Solanum tuberosum L.)

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Identification Method of Dynamic Parameters of Distribution Network Lines

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Is it possible to consider «kinetomics» and «argyromics» as novel trends of functional morphology and systems biology of parasitic and nonparasitic protozoa? a brief analytical review

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Simplifying the Proteome: Analytical Strategies for Improving Peak Capacity

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Decoding Breast Cancer Heterogeneity via Multi-Omics Integration and Language Model-Based InterpretationPreprint

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Analysis of NK cells in intravenous drug users exposed to Hepatitis C

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From Statistical to Biological Interactions via Omics Integration

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Metabolomics: From Scientific Research to the Clinical Diagnosis

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Nutrigenomics and Metabolomics of the Bioactive Compounds

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ProfileDB: A resource for proteomics and cross-omics biomarker discovery

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mixOmics: An R package for ‘omics feature selection and multiple data integration

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Integrative omics data mining

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Web-based multi-omics integration using the Analyst software suite

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Multi-omics Data Integration

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