Negative charge of the glutamic acid 417 residue is crucial for isomerohydrolase activity of RPE65
Open accessAbstract
RPE65 is the isomerohydrolase essential for regeneration of 11-cis retinal, the chromophore of visual pigments. Here we compared the impacts of two mutations in RPE65, E417Q identified in patients with Leber congenital amaurosis (LCA), and E417D on isomerohydrolase activity. Although both mutations decreased the stability of RPE65 and altered its sub-cellular localization, E417Q abolished isomerohydrolase activity whereas the E417D mutant retained partial enzymatic activity suggesting that the negative charge of E417 is important for RPE65 catalytic activity. Loss of charge at this position may represent a mechanism by which the E417Q mutation causes blindness in LCA patients.
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Mutations in RPE65 iron-coordinating His residues, second-sphere Glu residues, and third-sphere residues that hydrogen bond to second-sphere Glu residues abolish or greatly reduce RPE65 activity.
“Mutations in the iron-coordinating His residues,447 the second sphere Glu residues,472−474 and even a third sphere of residues that form hydrogen bonding interactions with the second-sphere Glu residues468,475 either abolish or greatly reduce RPE65 activity.”
From Chemistry of the Retinoid (Visual) Cycle (2014) · cites this paper as [473]
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The Retinal Pigment Epithelium in Visual Function
Strauss, O. (2005) · Physiological Reviews · doi:10.1152/physrev.00021.2004 · Cited by 2,828 · cited 1× · see citing works
“Mutations in the RPE65 gene cause severe congenital retinal dystrophies, such as juvenile severe retinitis pigmentosa and Leber congenital amaurosis (LCA), which lead to blindness [5-8].”
BackgroundMutations in RPE65 cause autosomal recessive childhood–onset severe retinal dystrophy
Gu, S.-M., Thompson, D. A., Srikumari, C. R. S., Lorenz, B., Finckh, U., Nicoletti, A., Murthy, K. R., Rathmann, M., Kumaramanickavel, G., Denton, M. J., et al. (1997) · Nature Genetics · doi:10.1038/ng1097-194 · Cited by 663 · see citing works
RPE65 is the isomerohydrolase in the retinoid visual cycle
Moiseyev, G., Chen, Y., Takahashi, Y., Wu, B. X., & Ma, J.-X. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503460102 · Cited by 536 · cited 2× · see citing works
“RPE65, identified as an iron-dependent isomerohydrolase of the visual cycle, is a key enzyme for regeneration of 11-cis retinal, the chromophore of both rod and cone visual pigments [1-3].”
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“Genetic analysis of LCA patients suggests that RPE65 gene mutations account for 3% [9] to 16% [10] of total cases of LCA.”
BackgroundRpe65 is the retinoid isomerase in bovine retinal pigment epithelium
Jin, M., Li, S., Moghrabi, W. N., Sun, H., & Travis, G. H. (2005) · Cell · doi:10.1016/j.cell.2005.06.042 · Cited by 424 · cited 2× · see citing works
“RPE65, identified as an iron-dependent isomerohydrolase of the visual cycle, is a key enzyme for regeneration of 11-cis retinal, the chromophore of both rod and cone visual pigments [1-3].”
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“Mutations in the RPE65 gene cause severe congenital retinal dystrophies, such as juvenile severe retinitis pigmentosa and Leber congenital amaurosis (LCA), which lead to blindness [5-8].”
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“RPE65, identified as an iron-dependent isomerohydrolase of the visual cycle, is a key enzyme for regeneration of 11-cis retinal, the chromophore of both rod and cone visual pigments [1-3].”
BackgroundResultInfluentialStone, E. M. (2007) · American Journal of Ophthalmology · doi:10.1016/j.ajo.2007.08.022 · Cited by 297 · cited 1× · see citing works
“Mutations in the RPE65 gene cause severe congenital retinal dystrophies, such as juvenile severe retinitis pigmentosa and Leber congenital amaurosis (LCA), which lead to blindness [5-8].”
BackgroundVitamin A metabolism in the retinal pigment epithelium: genes, mutations, and diseases
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“Mutations in the RPE65 gene cause severe congenital retinal dystrophies, such as juvenile severe retinitis pigmentosa and Leber congenital amaurosis (LCA), which lead to blindness [5-8].”
BackgroundCrystal structure of native RPE65, the retinoid isomerase of the visual cycle
Kiser, P. D., Golczak, M., Lodowski, D. T., Chance, M. R., & Palczewski, K. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906600106 · Cited by 158 · cited 3× · see citing works
“4A) has a seven-bladed propeller structure holding an iron ion coordinated by four highly conserved histidines (H180, H240, H313 and H527) [17].”
BackgroundInfluentialDefining the Residual Vision in Leber Congenital Amaurosis Caused by<i>RPE65</i>Mutations
Jacobson, S. G., Aleman, T. S., Cideciyan, A. V., Roman, A. J., Sumaroka, A., Windsor, E. A. M., Schwartz, S. B., Heon, E., & Stone, E. M. (2009) · Investigative Opthalmology & Visual Science · doi:10.1167/iovs.08-2696 · Cited by 121 · cited 8× · see citing works
“However, the molecular mechanism by which RPE65-LCA mutations cause such severe visual deficiency remains elusive.”
BackgroundInfluentialRPE65 Is an Iron(II)-dependent Isomerohydrolase in the Retinoid Visual Cycle
Moiseyev, G., Takahashi, Y., Chen, Y., Gentleman, S., Redmond, T. M., Crouch, R. K., & Ma, J.-X. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m508903200 · Cited by 119 · cited 1× · see citing works
“Previously, we have shown that the endogenous iron (II) ion [20] and the four conserved histidines are essential for the isomerase activity [16].”
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“RPE65 is predominantly expressed in the retinal pigment epithelium (RPE) and associated with the endoplasmic reticulum membrane [4].”
BackgroundMcBee, J. K., Kuksa, V., Alvarez, R., de Lera, A. R., Prezhdo, O., Haeseleer, F., Sokal, I., & Palczewski, K. (2000) · Biochemistry · doi:10.1021/bi001061c · Cited by 95 · cited 1× · see citing works
“Alternatively, the negative charge of E417 could stabilize the carbocation transition state of the substrate developed in the course of the reaction [21,22].”
BackgroundA Comprehensive Clinical and Biochemical Functional Study of a Novel RPE65 Hypomorphic Mutation
Lorenz, B., Poliakov, E., Schambeck, M., Friedburg, C., Preising, M. N., & Redmond, T. M. (2008) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.07-1671 · Cited by 89 · cited 1× · see citing works
“Unlike previously reported RPE65 mutations [11,12,19], both E417D and E417Q demonstrated expression levels comparable with that of wtRPE65 in 293A-LRAT cells.”
BackgroundMembrane phospholipids as an energy source in the operation of the visual cycle
Rando, R. R. (1991) · Biochemistry · doi:10.1021/bi00217a001 · Cited by 86 · see citing works
Four novel mutations in the RPE65 gene in patients with Leber congenital amaurosis
Simovich, M. J., Miller, B., Ezzeldin, H. H., Kirkland, B. T., McLeod, G., Fulmer, C., Nathans, J., Jacobson, S. G., & Pittler, S. J. (2001) · Human Mutation · doi:10.1002/humu.1168 · Cited by 63 · cited 3× · see citing works
“In this study, we investigated the E417Q variant of RPE65 which has been identified in LCA patients [14] and compared its activity with that of E417D.”
BackgroundResultPredicting the pathogenicity ofRPE65mutations
Philp, A. R., Jin, M., Li, S., Schindler, E. I., Iannaccone, A., Lam, B. L., Weleber, R. G., Fishman, G. A., Jacobson, S. G., Mullins, R. F., et al. (2009) · Human Mutation · doi:10.1002/humu.21033 · Cited by 60 · see citing works
Takahashi, Y., Moiseyev, G., Chen, Y., & Ma, J.-X. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.09.002 · Cited by 54 · cited 2× · see citing works
“QBI-293 A cells (Qbiogene, Carlsbad, CA) stably expressing LRAT (293A-LRAT) [16] were infected with adenoviruses expressing wtRPE65 and its mutants at MOI of 100 and the subcellular localization of recombinant RPE65 was elucidated using FractPrepTM kit (BioVision, Mountain View, CA).”
BackgroundMethodSelf-citationTakahashi, Y., Chen, Y., Moiseyev, G. P., & Ma, J.-X. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m603725200 · Cited by 42 · cited 7× · see citing works
“To estimate the half-lives of wtRPE65 and its mutants, 293A-LRAT cells were infected with the adenoviruses at MOI of 20 and stability assays were performed as described previously [11].”
BackgroundMethodResultInfluentialSelf-citationPurified RPE65 shows isomerohydrolase activity after reassociation with a phospholipid membrane
Nikolaeva, O., Takahashi, Y., Moiseyev, G. P., & Ma, J. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07021.x · Cited by 39 · cited 2× · see citing works
“Generation of recombinant adenoviruses (Ad-RPE65) was performed as described before [15].”
MethodSelf-citationChen, Y., Moiseyev, G. P., Takahashi, Y., & Ma, J. (2006) · FEBS Letters · doi:10.1016/j.febslet.2006.06.078 · Cited by 28 · cited 3× · see citing works
“Unlike previously reported RPE65 mutations [11,12,19], both E417D and E417Q demonstrated expression levels comparable with that of wtRPE65 in 293A-LRAT cells.”
BackgroundResultSelf-citation
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Chemistry of the Retinoid (Visual) Cycle
Kiser, P. D., Golczak, M., & Palczewski, K. (2014) · Chemical Reviews · doi:10.1021/cr400107q · Cited by 353 · see citing works
Leber congenital amaurosis due to RPE65 mutations and its treatment with gene therapy
Cideciyan, A. V. (2010) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2010.04.002 · Cited by 256 · see citing works
“…from a complete lack of 11-cis retinoid production to very low but detectable levels (Bereta et al., 2008; Jin et al., 2005; Lorenz et al., 2008; Nikolaeva et al., 2010; Philp et al., 2009; Redmond et al., 2005; Takahashi et al., 2006) but available in vivo results from a knockin mouse appear…”
BackgroundResultRetinal pigment epithelium 65 kDa protein (RPE65): An update
Kiser, P. D. (2021) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2021.101013 · Cited by 96 · see citing works
“This finding along with data from other biochemical studies on RPE65 (Nikolaeva et al., 2010; Takahashi et al., 2005), indicate that the negative charge of the second sphere Glu residues is critical for their role in supporting iron coordination by the primary sphere His residues for CCDs in…”
Membrane-binding and enzymatic properties of RPE65
Kiser, P. D., & Palczewski, K. (2010) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2010.03.002 · Cited by 62 · see citing works
“Mutagenesis experiments combined with mutations observed in LCA patients have established that the second shell Glu residues are essential for RPE65 isomerase activity and even highly similar residues such as Asp and Gln are unable to functionally substitute for them (Hanein et al., 2004; Nikolaeva et al., 2010; Redmo…”
Therapy with voretigene neparvovec. How to measure success?
Stingl, K., Kempf, M., Jung, R., Kortüm, F., Righetti, G., Reith, M., Dimopoulos, S., Ott, S., Kohl, S., & Stingl, K. (2023) · Progress in Retinal and Eye Research · doi:10.1016/j.preteyeres.2022.101115 · Cited by 48 · see citing works
Li, S., Izumi, T., Hu, J. G., Jin, H. H., Siddiqui, A.-A. A., Jacobson, S. G., Bok, D., & Jin, M. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.552117 · Cited by 41 · see citing works
“Although the biochemical attribute of amino acid residues mutated is important in determining the enzyme activity of a mutant RPE65 (19), our result also suggests that the relative spatial distance between a mutation site and the catalytic site is a critical factor in determining whether the mutant RPE65 can be rescue…”
BackgroundNovel RPE65 mutations associated with Leber congenital amaurosis in Chinese patients.
Xu, F., Dong, Q. G., Liu, L., Li, H., Liang, X., Jiang, R., Sui, R., & Dong, F. (2012) · PubMed Central · Cited by 31 · see citing works
Key Residues for Catalytic Function and Metal Coordination in a Carotenoid Cleavage Dioxygenase
Sui, X., Zhang, J., Golczak, M., Palczewski, K., & Kiser, P. D. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.744912 · Cited by 29 · see citing works
“3 The abbreviations used are: RAL, all-trans-retinal; CCD, carotenoid cleavage dioxygenase; ACO, apocarotenoid-cleaving oxygenase; BisTris, 2-[bis(2hydroxyethyl)amino]-2-(hydroxymethyl)propane-1,3-diol; BisTris propane, 1,3-bis[tris(hydroxymethyl)methylamino]propane; LCA Leber congenital amaurosis. crossmark THE JOURN…”
BackgroundMethodResultInfluentialLi, S., Samardzija, M., Yang, Z., Grimm, C., & Jin, M. (2016) · Journal of Neuroscience · doi:10.1523/jneurosci.3857-15.2016 · Cited by 24 · see citing works
“In vitro and animal studies showed that not only R91W mutation but also many other mutations resulted in a drastic decrease of RPE65 (Chen et al., 2006; Takahashi et al., 2006; Bereta et al., 2008; Philp et al., 2009; Nikolaeva et al., 2010; Wright et al., 2013; S. Li et al., 2014, 2015).”
BackgroundLi, S., Hu, J. G., Jin, R. J., Aiyar, A. A., Jacobson, S. G., Bok, D., & Jin, M. (2015) · The Journal of Biochemistry · doi:10.1093/jb/mvv028 · Cited by 18 · see citing works
Functional Rescue of Retinal Degeneration-Associated Mutant RPE65 Proteins
Jin, M., Li, S., Hu, J. G., Jin, H. H., Jacobson, S. G., & Bok, D. (2015) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-17121-0_70 · Cited by 9 · see citing works
“Although the biochemical attributes of amino acid residue mutated are important in determining the enzyme activity of a mutant RPE65 (Nikolaeva et al., 2010), our results also suggest that the relative spatial distance between a mutation site and the catalytic site is a critical factor in determining whether the mutan…”
BackgroundPormehr, L. A., Manian, K. V., Cho, H. E., Redmond, T. M., & Comander, J. (2025) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.66.13.10 · Cited by 1 · see citing works
“26 More than 230 missense mutations lacking a clear pathogenicity classification or classified as VUS have been reported in public databases for RPE65 (ClinVar, https://www.ncbi.nlm.nih.gov/clinvar/ ?term=RPE65).”
Regeneration of 11-cis-Retinal in the Retinoid Visual Cycle
Moiseyev, G. P., & Ma, J. (2011) · CRC Press eBooks · doi:10.1201/b11484-4
Self-citationPormehr, L. A., Manian, K. V., Cho, H. E., & Comander, J. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.01.31.635952
- Authors
- Nikolaeva, O., Takahashi, Y., Moiseyev, G., & Ma, J.-X.
- Affiliations
- University of Oklahoma Health Sciences Center (US)
- OU Health (US)
- Venue
- Biochemical and Biophysical Research Communications
- Publisher
- Elsevier BV
- Published
- 2010-01
- Volume
- 391
- Issue
- 4
- Pages
- 1757-1761
- ISSN
- 0006-291X (ISSN-L)
- PMC
- PMC2812700
- OpenAlex
- W2007223352
- Cited by
- 14
- References
- 22
- Citations by year
- 2025: 2 · 2022: 1 · 2021: 1 · 2016: 2 · 2015: 2 · 2014: 1 · 2013: 1 · 2012: 1
- FWCI
- 0.54
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Biochemical and Biophysical Research Communications (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Center for Research Resources
- Oklahoma Center for the Advancement of Science and Technology
- National Institutes of Health (EY012231, EY018659, EY019309, P20RR024215)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinal Development and Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinoids in leukemia and cellular processes
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Photoreceptor and optogenetics research
- Keywords
- RPE65, Leber congenital amaurosis, 11-cis-retinal regeneration, protein stability, subcellular localization, negative charge, catalytic activity
- MeSH terms
- Retinoid Isomerohydrolase, Blindness, Carrier Proteins, Eye Proteins, Humans, Mutation, Protein Conformation, Mutagenesis, Site-Directed, Glutamic Acid, cis-trans-Isomerases, Static Electricity, Leber Congenital Amaurosis
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