A Small-Molecule Inhibitor of BCL6 Kills DLBCL Cells In Vitro and In Vivo
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The BCL6 transcriptional repressor is the most frequently involved oncogene in diffuse large B cell lymphoma (DLBCL). We combined computer-aided drug design with functional assays to identify low-molecular-weight compounds that bind to the corepressor binding groove of the BCL6 BTB domain. One such compound disrupted BCL6/corepressor complexes in vitro and in vivo, and was observed by X-ray crystallography and NMR to bind the critical site within the BTB groove. This compound could induce expression of BCL6 target genes and kill BCL6-positive DLBCL cell lines. In xenotransplantation experiments, the compound was nontoxic and potently suppressed DLBCL tumors in vivo. The compound also killed primary DLBCLs from human patients.
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Several peptide and small molecule inhibitors targeting BCL6 have shown efficacy in vivo, but only at high concentrations, which has limited their translation into clinical therapeutic agents.
“Several peptide and small molecule inhibitors targeting BCL6 have shown efficacy in vivo, but only at high concentrations, which has limited their translation into clinical therapeutic agents13,14.”
From Small-molecule-induced polymerization triggers degradation of BCL6 (2020) · cites this paper as [13]
BCL6 is a promising drug target for non-Hodgkin lymphomas including diffuse large B cell lymphoma and follicular lymphoma.
“BCL6 is a promising drug target for non-Hodgkin lymphomas including diffuse large B cell lymphoma (DLBCL)13,14 and follicular lymphoma15.”
From Small-molecule-induced polymerization triggers degradation of BCL6 (2020) · cites this paper as [13]
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Berman, H. M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.235 · Cited by 40,196 · see citing works
<i>Coot</i> : model-building tools for molecular graphics
Emsley, P., & Cowtan, K. (2004) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444904019158 · Cited by 30,571 · see citing works
<i>Phaser</i> crystallographic software
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007) · Journal of Applied Crystallography · doi:10.1107/s0021889807021206 · Cited by 20,612 · see citing works
The PyMOL Molecular Graphics System
DeLano, W. L. (2002) · Medical Entomology and Zoology · Cited by 18,147 · see citing works
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse‐Kunstleve, R. W., Jiang, J., Kuszewski, J. J., Nilges, M., Pannu, N., et al. (1998) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444998003254 · Cited by 15,720 · see citing works
Refinement of Macromolecular Structures by the Maximum-Likelihood Method
Murshudov, G. N., Vagin, A. A., & Dodson, E. J. (1997) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444996012255 · Cited by 14,671 · see citing works
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., et al. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp973084f · Cited by 14,270 · see citing works
Self-citationCHARMM: A program for macromolecular energy, minimization, and dynamics calculations
Brooks, B., Bruccoleri, R., Olafson, B. D., States, D., Swaminathan, S., & Karplus, M. (1983) · Journal of Computational Chemistry · doi:10.1002/jcc.540040211 · Cited by 13,736 · see citing works
Drug-like properties and the causes of poor solubility and poor permeability
Lipinski, C. A. (2000) · Journal of Pharmacological and Toxicological Methods · doi:10.1016/s1056-8719(00)00107-6 · Cited by 3,776 · see citing works
A geometric approach to macromolecule-ligand interactions
Kuntz, I. D., Blaney, J. M., Oatley, S. J., Langridge, R., & Ferrin, T. E. (1982) · Journal of Molecular Biology · doi:10.1016/0022-2836(82)90153-x · Cited by 2,287 · see citing works
Minor, W., Cymborowski, M., Otwinowski, Z., & Chruszcz, M. (2006) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444906019949 · Cited by 2,118 · see citing works
Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
Wells, J. A., & McClendon, C. L. (2007) · Nature · doi:10.1038/nature06526 · Cited by 1,963 · see citing works
DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
Ewing, T. J. A., Makino, S., Skillman, A. G., & Kuntz, I. D. (2001) · Journal of Computer-Aided Molecular Design · doi:10.1023/a:1011115820450 · Cited by 1,188 · see citing works
Structure-Based Strategies for Drug Design and Discovery
Kuntz, I. D. (1992) · Science · doi:10.1126/science.257.5073.1078 · Cited by 989 · see citing works
Control of Inflammation, Cytokine Expression, and Germinal Center Formation by BCL-6
Dent, A. L., Shaffer, A. L., Yu, X., Allman, D., & Staudt, L. M. (1997) · Science · doi:10.1126/science.276.5312.589 · Cited by 945 · see citing works
The BCL-6 proto-oncogene controls germinal-centre formation and Th2-type inflammation
Ye, B. H., Cattoretti, G., Shen, Q. “., Zhang, J., Hawe, N., de Waard, R., Leung, C. C., Nouri-Shirazi, M. A., Orazi, A., Chaganti, R. S. K., et al. (1997) · Nature Genetics · doi:10.1038/ng0697-161 · Cited by 820 · see citing works
Sequence and structural analysis of BTB domain proteins
Stogios, P. J., Downs, G. S., Jauhal, J. J., Nandra, S. K., & Privé, G. G. (2005) · Genome Biology · doi:10.1186/gb-2005-6-10-r82 · Cited by 694 · see citing works
Self-citationThe BCL6 proto-oncogene suppresses p53 expression in germinal-centre B cells
Phan, R. T., & Dalla‐Favera, R. (2004) · Nature · doi:10.1038/nature03147 · Cited by 680 · see citing works
Butina, D. (1999) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci9803381 · Cited by 658 · see citing works
Moerke, N., Aktas, H., Chen, H., Cantel, S., Reibarkh, M., Fahmy, A., Gross, J., Degterev, A., Yuan, J., Chorev, M., et al. (2007) · Cell · doi:10.1016/j.cell.2006.11.046 · Cited by 568 · see citing works
Doman, T. N., McGovern, S. L., Witherbee, B. J., Kasten, T. P., Kurumbail, R. G., Stallings, W. C., Connolly, D. T., & Shoichet, B. K. (2002) · Journal of Medicinal Chemistry · doi:10.1021/jm010548w · Cited by 463 · see citing works
Cattoretti, G., Pasqualucci, L., Ballon, G., Tam, W., Nandula, S. V., Shen, Q., Mo, T., Murty, V. V., & Dalla-Favera, R. (2005) · Cancer Cell · doi:10.1016/j.ccr.2005.03.037 · Cited by 383 · see citing works
Phan, R. T., Saito, M., Basso, K., Niu, H., & Dalla-Favera, R. (2005) · Nature Immunology · doi:10.1038/ni1245 · Cited by 343 · see citing works
MTA3 and the Mi-2/NuRD Complex Regulate Cell Fate during B Lymphocyte Differentiation
Fujita, N., Jaye, D. L., Geigerman, C., Akyildiz, A., Mooney, M. R., Boss, J. M., & Wade, P. A. (2004) · Cell · doi:10.1016/j.cell.2004.09.014 · Cited by 328 · see citing works
Polo, J. M., Dell’Oso, T., Ranuncolo, S. M., Cerchietti, L. C. A., Beck, D. B., da Silva, G. F., Privé, G. G., Licht, J. D., & Melnick, A. M. (2004) · Nature Medicine · doi:10.1038/nm1134 · Cited by 291 · see citing works
Self-citationMechanism of SMRT Corepressor Recruitment by the BCL6 BTB Domain
Ahmad, K. F., Melnick, A. M., Lax, S. A., Bouchard, D., Liu, J., Kiang, C. L., Mayer, S., Takahashi, S., Licht, J. D., & Privé, G. G. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00454-4 · Cited by 282 · see citing works
Self-citationRanuncolo, S. M., Polo, J. M., Dierov, J., Singer, M., Kuo, T., Greally, J., Green, R., Carroll, M., & Melnick, A. (2007) · Nature Immunology · doi:10.1038/ni1478 · Cited by 278 · see citing works
Self-citationMolecular docking and ligand specificity in fragment-based inhibitor discovery
Chen, Y., & Shoichet, B. K. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.155 · Cited by 252 · see citing works
A peptomimetic inhibitor of BCL6 with potent antilymphoma effects in vitro and in vivo
Cerchietti, L. C. A., Yang, S. N., Shaknovich, R., Hatzi, K., Polo, J. M., Chadburn, A., Dowdy, S. F., & Melnick, A. M. (2008) · Blood · doi:10.1182/blood-2008-07-168773 · Cited by 183 · see citing works
Self-citationEmerging classes of protein–protein interaction inhibitors and new tools for their development
Pagliaro, L., Felding, J., Audouze, K., Nielsen, S. J., Terry, R. B., Krog-Jensen, C., & Butcher, S. (2004) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2004.06.006 · Cited by 168 · see citing works
Structure of a BCOR Corepressor Peptide in Complex with the BCL6 BTB Domain Dimer
Ghetu, A. F., Corcoran, C. M., Cerchietti, L., Bardwell, V. J., Melnick, A., & Privé, G. G. (2008) · Molecular Cell · doi:10.1016/j.molcel.2007.12.026 · Cited by 168 · see citing works
Self-citationPan, Y., Huang, N., Cho, S., & MacKerell, A. D. (2002) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci020055f · Cited by 157 · see citing works
Self-citationParekh, S. S., Polo, J. M., Shaknovich, R., Juszczyński, P., Lev, P. R., Ranuncolo, S. M., Yin, Y., Klein, U., Cattoretti, G., Favera, R. D., et al. (2007) · Blood · doi:10.1182/blood-2007-01-069575 · Cited by 146 · see citing works
Self-citationPolo, J. M., Juszczyński, P., Monti, S., Cerchietti, L. C. A., Ye, K. Q., Greally, J. M., Shipp, M. A., & Melnick, A. M. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611399104 · Cited by 135 · see citing works
Self-citationIdentification of Novel Extracellular Signal-Regulated Kinase Docking Domain Inhibitors
Hancock, C. N., Macias, A. T., Lee, E. K., Yu, S. Y., MacKerell, A. D., & Shapiro, P. S. (2005) · Journal of Medicinal Chemistry · doi:10.1021/jm0501174 · Cited by 117 · see citing works
Self-citationBCL6 represses CHEK1 and suppresses DNA damage pathways in normal and malignant B-cells
Ranuncolo, S. M., Polo, J. M., & Melnick, A. (2008) · Blood Cells, Molecules, and Diseases · doi:10.1016/j.bcmd.2008.02.003 · Cited by 116 · see citing works
Self-citationComputational Model of Intracellular Pharmacokinetics of Paclitaxel
Kuh, H., Jang, S. H., Wientjes, M. G., & Au, J. L. ‐. (2000) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1016/s0022-3565(24)39296-1 · Cited by 116 · see citing works
Markowitz, J., Chen, I., Gitti, R. K., Baldisseri, D. M., Pan, Y., Udan, R. S., Carrier, F., MacKerell, A. D., & Weber, D. J. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm0497038 · Cited by 91 · see citing works
Self-citationComputational Identification of Inhibitors of Protein-Protein Interactions
Zhong, S., Macias, A. T., & MacKerell, A. D. (2006) · Current Topics in Medicinal Chemistry · doi:10.2174/156802607779318334 · Cited by 84 · see citing works
Self-citationThe human BCL6 transgene promotes the development of lymphomas in the mouse
Baron, B. W., Anastasi, J., MONTAG, A. G., Huo, D., Baron, R. M., Karrison, T. G., Thirman, M. J., Subudhi, S. K., Chin, R., Felsher, D. W., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0406138101 · Cited by 73 · see citing works
CtBP Is an Essential Corepressor for BCL6 Autoregulation
Mendez, L., Polo, J. M., Yu, J., Krupski, M., Ding, B. B., Melnick, A. M., & Ye, B. H. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01400-07 · Cited by 69 · see citing works
Self-citationCrystal structure of the BTB domain from the LRF/ZBTB7 transcriptional regulator
Stogios, P. J., Chen, L., & Privé, G. G. (2006) · Protein Science · doi:10.1110/ps.062660907 · Cited by 61 · see citing works
Self-citationLemaire, S., Françoise Van Bambeke, A., Appelbaum, P. C., & Tulkens, P. M. (2009) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkp267 · Cited by 60 · see citing works
Huang, N., Nagarsekar, A., Xia, G., Hayashi, J., & MacKerell, A. D. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm030470e · Cited by 50 · see citing works
Self-citationBCL-6 in the Pathogenesis of Non-Hodgkin's Lymphoma
Ye, B. H. (2000) · Cancer Investigation · doi:10.3109/07357900009012179 · Cited by 49 · see citing works
Langer, O., Karch, R., Müller, U., Dobrozemsky, G., Abrahim, A., Zeitlinger, M. A., Lackner, E., Joukhadar, C., Dudczak, R., Kletter, K., et al. (2005) · PubMed · Cited by 48 · see citing works
Stamler, D. A., Edelstein, M. A. C., & Edelstein, P. H. (1994) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.38.2.217 · Cited by 47 · see citing works
Meyer, A. P., Bril-Bazuin, C., Mattie, H., & van den Broek, P. J. (1993) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.37.11.2318 · Cited by 40 · see citing works
Anatomy of Fingerprint Search Calculations on Structurally Diverse Sets of Active Compounds
Godden, J. W., Stahura, F. L., & Bajorath, J. (2005) · Journal of Chemical Information and Modeling · doi:10.1021/ci050276w · Cited by 34 · see citing works
Macromolecular therapeutics: emerging strategies for drug discovery in the postgenome era.
Juliano, R. L., Astriab‐Fisher, A., & Falke, D. (2001) · PubMed · Cited by 30 · see citing works
Sequential Transcription Factor Targeting for Diffuse Large B-Cell Lymphomas
Cerchietti, L. C. A., Polo, J. M., da Silva, G. F., Farinha, P., Shaknovich, R., Gascoyne, R. D., Dowdy, S. F., & Melnick, A. M. (2008) · Cancer Research · doi:10.1158/0008-5472.can-07-5817 · Cited by 30 · see citing works
Self-citationWoodward, P. W., Williams, C., Sewing, A., & Benson, N. (2006) · SLAS DISCOVERY · doi:10.1177/1087057105280779 · Cited by 15 · see citing works
Reprogramming Specific Gene Expression Pathways in B-Cell Lymphomas
Melnick, A. M. (2004) · Cell Cycle · doi:10.4161/cc.4.2.1469 · Cited by 7 · see citing works
Self-citation
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Computational Methods in Drug Discovery
Sliwoski, G. R., Kothiwale, S., Meiler, J., & Lowe, E. W. (2013) · Pharmacological Reviews · doi:10.1124/pr.112.007336 · Cited by 2,226 · see citing works
Sehn, L. H., & Gascoyne, R. D. (2014) · Blood · doi:10.1182/blood-2014-05-577189 · Cited by 562 · see citing works
Rubenstein, J. L., Hsi, E. D., Johnson, J. L., Jung, S., Nakashima, M. O., Grant, B., Cheson, B. D., & Kaplan, L. D. (2013) · Journal of Clinical Oncology · doi:10.1200/jco.2012.46.9957 · Cited by 506 · see citing works
Relapsed/Refractory Diffuse Large B-Cell Lymphoma
Friedberg, J. W. (2011) · Hematology · doi:10.1182/asheducation-2011.1.498 · Cited by 499 · see citing works
Pathogenesis of Human B Cell Lymphomas
Shaffer, A. L., Young, R. M., & Staudt, L. M. (2012) · Annual Review of Immunology · doi:10.1146/annurev-immunol-020711-075027 · Cited by 437 · see citing works
Roles of BCL6 in normal and transformed germinal center B cells
Basso, K., & Dalla‐Favera, R. (2012) · Immunological Reviews · doi:10.1111/j.1600-065x.2012.01112.x · Cited by 431 · see citing works
Diffuse large B-cell lymphoma—treatment approaches in the molecular era
Roschewski, M. J., Staudt, L. M., & Wilson, W. H. (2013) · Nature Reviews Clinical Oncology · doi:10.1038/nrclinonc.2013.197 · Cited by 413 · see citing works
Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin
Masuda, T., Wang, X., Maeda, M., Canver, M. C., Sher, F., Funnell, A. P. W., Fisher, C., Suciu, M., Martyn, G. E., Norton, L. J., et al. (2016) · Science · doi:10.1126/science.aad3312 · Cited by 373 · see citing works
Green, M. R., Gentles, A. J., Nair, R. V., Irish, J. M., Kihira, S., Liu, C. L., Kela, I., Hopmans, E. S., Myklebust, J. H., Ji, H. P., et al. (2013) · Blood · doi:10.1182/blood-2012-09-457283 · Cited by 318 · see citing works
Structural basis for Cul3 protein assembly with the BTB-Kelch family of E3 ubiquitin ligases
Canning, P., Cooper, C. D. O., Krojer, T., Murray, J. W., Pike, A. C. W., Chaikuad, A., Keates, T., Thangaratnarajah, C., Hojzan, V., Marsden, B. D., et al. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.437996 · Cited by 284 · see citing works
“Promisingly, small molecules have been identified previously that target the corepressor binding groove of the BCL6 BTB domain (61) as well as the substrate binding grooves of E3 ligases, including MDM2 (62), VHL (63), and Skp2 (64).”
Genetics of diffuse large B-cell lymphoma
Pasqualucci, L., & Dalla‐Favera, R. (2018) · Blood · doi:10.1182/blood-2017-11-764332 · Cited by 284 · see citing works
Targeting Transcription Factors in Cancer
Bhagwat, A. S., & Vakoc, C. R. (2015) · Trends in Cancer · doi:10.1016/j.trecan.2015.07.001 · Cited by 276 · see citing works
Small-molecule-induced polymerization triggers degradation of BCL6
Słabicki, M., Yoon, H., Koeppel, J., Nitsch, L., Roy Burman, S. S., Di Genua, C., Donovan, K. A., Sperling, A. S., Hunkeler, M., Tsai, J. M., et al. (2020) · Nature · doi:10.1038/s41586-020-2925-1 · Cited by 270 · see citing works
MALT1 Small Molecule Inhibitors Specifically Suppress ABC-DLBCL In Vitro and In Vivo
Fontán, L., Yang, C., Kabaleeswaran, V., Volpon, L., Osborne, M. J., Beltrán, E., García, M. A. M., Cerchietti, L. C. A., Shaknovich, R., Yang, S. N., et al. (2012) · Cancer Cell · doi:10.1016/j.ccr.2012.11.003 · Cited by 267 · see citing works
Self-citationBéguelin, W., Teater, M., Gearhart, M. D., Calvo Fernández, M. T., Goldstein, R. L., Cárdenas, M. G., Hatzi, K., Rosen, M., Shen, H., Corcoran, C. M., et al. (2016) · Cancer Cell · doi:10.1016/j.ccell.2016.07.006 · Cited by 254 · see citing works
Self-citationChemically Induced Degradation of the Oncogenic Transcription Factor BCL6
Kerres, N., Steurer, S., Schlager, S., Bader, G., Berger, H., Caligiuri, M., Dank, C., Engen, J. R., Ettmayer, P., Fischerauer, B., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.08.081 · Cited by 207 · see citing works
BCL6 enables Ph+ acute lymphoblastic leukaemia cells to survive BCR–ABL1 kinase inhibition
Duy, C., Hurtz, C., Shojaee, S., Cerchietti, L. C. A., Geng, H., Swaminathan, S., Klemm, L., Kweon, S.-M., Nahar, R. R., Braig, M., et al. (2011) · Nature · doi:10.1038/nature09883 · Cited by 199 · see citing works
Self-citationBallesteros‐Tato, A., Randall, T. D., Lund, F. E., Spolski, R. J., Leonard, W. J., & León, B. (2016) · Immunity · doi:10.1016/j.immuni.2015.11.017 · Cited by 202 · see citing works
Protein-protein interaction modulators: advances, successes and remaining challenges
Mabonga, L., & Kappo, A. P. (2019) · Biophysical Reviews · doi:10.1007/s12551-019-00570-x · Cited by 196 · see citing works
Hatzi, K., Jiang, Y., Huang, C., Garrett-Bakelman, F. E., Gearhart, M. D., Γιαννοπούλου, Ε., Zumbo, P., Kirouac, K. N., Bhaskara, S., Polo, J. M., et al. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.06.016 · Cited by 186 · see citing works
Self-citationMEF2B mutations lead to deregulated expression of the oncogene BCL6 in diffuse large B cell lymphoma
Ying, C. Y., Dominguez-Sola, D., Fabi, M., Lorenz, I. C., Hussein, S., Bansal, M., Califano, A., Pasqualucci, L., Basso, K., & Dalla‐Favera, R. (2013) · Nature Immunology · doi:10.1038/ni.2688 · Cited by 187 · see citing works
Breaking bad in the germinal center: how deregulation of BCL6 contributes to lymphomagenesis
Hatzi, K., & Melnick, A. (2014) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2014.03.001 · Cited by 183 · see citing works
Self-citationThe Expanding Role of the BCL6 Oncoprotein as a Cancer Therapeutic Target
Cárdenas, M., Oswald, E. M., Yu, W., Xue, F., MacKerell, A. D., & Melnick, A. M. (2016) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-16-2071 · Cited by 181 · see citing works
Self-citationGerminal center‐derived lymphomas: The darkest side of humoral immunity
Mlynarczyk, C., Fontán, L., & Melnick, A. (2019) · Immunological Reviews · doi:10.1111/imr.12755 · Cited by 179 · see citing works
Self-citationHurtz, C., Hatzi, K., Cerchietti, L. C. A., Braig, M., Park, E., Kim, Y., Herzog, S., Ramezani-Rad, P., Jumaa, H., Müller, M. C., et al. (2011) · The Journal of Experimental Medicine · doi:10.1084/jem.20110304 · Cited by 177 · see citing works
Self-citationRationally designed BCL6 inhibitors target activated B cell diffuse large B cell lymphoma
Cardenas, M. G., Yu, W., Beguelin, W., Teater, M. R., Geng, H., Goldstein, R. L., Oswald, E., Hatzi, K., Yang, S.-N., Cohen, J., et al. (2016) · Journal of Clinical Investigation · doi:10.1172/jci85795 · Cited by 176 · see citing works
Self-citationTomašič, T., & Mašič, L. P. (2012) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2012.688743 · Cited by 172 · see citing works
Camicia, R., Winkler, H. C., & Hassa, P. O. (2015) · Molecular Cancer · doi:10.1186/s12943-015-0474-2 · Cited by 169 · see citing works
Double-hit and double-protein-expression lymphomas: aggressive and refractory lymphomas
Sarkozy, C., Traverse‐Glehen, A., & Coiffier, B. (2015) · The Lancet Oncology · doi:10.1016/s1470-2045(15)00005-4 · Cited by 168 · see citing works
Current Concepts in Pediatric Philadelphia Chromosome-Positive Acute Lymphoblastic Leukemia
Bernt, K. M., & Hunger, S. P. (2014) · Frontiers in Oncology · doi:10.3389/fonc.2014.00054 · Cited by 154 · see citing works
Rapino, F. A., Robles, E. F., Richter, J. Á., Kallin, E. M., Martinez-Climent, J. A., & Graf, T. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.03.003 · Cited by 144 · see citing works
Huang, C., Hatzi, K., & Melnick, A. M. (2013) · Nature Immunology · doi:10.1038/ni.2543 · Cited by 139 · see citing works
Self-citationMolecular pathogenesis and targeted therapies for NOTCH1-induced T-cell acute lymphoblastic leukemia
Paganin, M., & Ferrando, A. A. (2010) · Blood Reviews · doi:10.1016/j.blre.2010.09.004 · Cited by 138 · see citing works
Ex vivo engineered immune organoids for controlled germinal center reactions
Purwada, A., Jaiswal, M. K., Ahn, H., Nojima, T., Kitamura, D., Gaharwar, A. K., Cerchietti, L. C. A., & Singh, A. K. (2015) · Biomaterials · doi:10.1016/j.biomaterials.2015.06.002 · Cited by 135 · see citing works
Self-citationMalignant pirates of the immune system
Rui, L., Schmitz, R., Ceribelli, M., & Staudt, L. M. (2011) · Nature Immunology · doi:10.1038/ni.2094 · Cited by 131 · see citing works
TBL1XR1 mutations drive extranodal lymphoma by inducing a pro-tumorigenic memory fate
Venturutti, L., Teater, M., Zhai, A., Chadburn, A., Babiker, L., Kim, D., Béguelin, W., Lee, T. C., Kim, Y., Chin, C. R., et al. (2020) · Cell · doi:10.1016/j.cell.2020.05.049 · Cited by 127 · see citing works
Self-citationKAP1 Promotes Proliferation and Metastatic Progression of Breast Cancer Cells
Addison, J., Koontz, C., Fugett, J. H., Creighton, C. J., Chen, D., Farrugia, M. K., Padon, R. R., Voronkova, M. A., McLaughlin, S. L., Livengood, R. H., et al. (2014) · Cancer Research · doi:10.1158/0008-5472.can-14-1561 · Cited by 120 · see citing works
Cheng, Z.-Y., He, T., Gao, X., Zhao, Y., & Wang, J. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.713294 · Cited by 117 · see citing works
Advances and challenges in immunotherapy for solid organ and hematopoietic stem cell transplantation
McDonald-Hyman, C. S., Turka, L. A., & Blazar, B. R. (2015) · Science Translational Medicine · doi:10.1126/scitranslmed.aaa6853 · Cited by 112 · see citing works
Early Steps of Follicular Lymphoma Pathogenesis
Roulland, S., Faroudi, M., Mamessier, É., Sungalee, S., Salles, G., & Nadel, B. (2011) · Advances in immunology · doi:10.1016/b978-0-12-385991-4.00001-5 · Cited by 110 · see citing works
K63-Linked Ubiquitination in Kinase Activation and Cancer
Wang, G., Gao, Y., Li, L., Jin, G., Cai, Z., Chao, J. I., & Lin, H.-K. (2012) · Frontiers in Oncology · doi:10.3389/fonc.2012.00005 · Cited by 108 · see citing works
Purwada, A., & Singh, A. (2016) · Nature Protocols · doi:10.1038/nprot.2016.157 · Cited by 101 · see citing works
Geng, H., Brennan, S. K., Milne, T. A., Chen, W., Li, Y., Hurtz, C., Kweon, S.-M., Zickl, L., Shojaee, S., Neuberg, D. S., et al. (2012) · Cancer Discovery · doi:10.1158/2159-8290.cd-12-0208 · Cited by 100 · see citing works
Self-citationEpigenetic regulation of fetal globin gene expression in adult erythroid cells
Ginder, G. D. (2014) · Translational research · doi:10.1016/j.trsl.2014.05.002 · Cited by 97 · see citing works
Shim, J., & MacKerell, A. D. (2011) · MedChemComm · doi:10.1039/c1md00044f · Cited by 102 · see citing works
Self-citationThe transcriptional modulator BCL6 as a molecular target for breast cancer therapy
Walker, S. R., Liu, S., Xiang, M. H., Nicolais, M., Hatzi, K., Giannopoulou, E., Elemento, O., Cerchietti, L. C. A., Melnick, A. M., & Frank, D. A. (2014) · Oncogene · doi:10.1038/onc.2014.61 · Cited by 94 · see citing works
Self-citationImatinib disrupts lymphoma angiogenesis by targeting vascular pericytes
Ruan, J., Luo, M., Wang, C., Fan, L., Yang, S. N., Cárdenas, M., Geng, H., Leonard, J. P., Melnick, A. M., Cerchietti, L. C. A., et al. (2013) · Blood · doi:10.1182/blood-2013-03-490763 · Cited by 94 · see citing works
Self-citationYu, J., Sun, W., Hua, F., Xie, J., Lin, H., Zhou, D., & Hu, Z. (2015) · Cancer Letters · doi:10.1016/j.canlet.2015.05.029 · Cited by 93 · see citing works
Mannose receptor induces T-cell tolerance via inhibition of CD45 and up-regulation of CTLA-4
Schuette, V., Embgenbroich, M., Ulas, T., Welz, M., Schulte-Schrepping, J., Draffehn, A. M., Quast, T., Koch, K., Nehring, M., König, J., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1605885113 · Cited by 93 · see citing works
Histone demethylase LSD1 is required for germinal center formation and BCL6-driven lymphomagenesis
Hatzi, K., Geng, H., Doane, A. S., Meydan, C., LaRiviere, R., Cárdenas, M., Duy, C., Shen, H., Calvo-Vidal, M. N., Baslan, T., et al. (2018) · Nature Immunology · doi:10.1038/s41590-018-0273-1 · Cited by 93 · see citing works
Self-citationIntegrin-specific hydrogels as adaptable tumor organoids for malignant B and T cells
Tian, Y. F., Ahn, H., Schneider, R. S., Yang, S. N., Lidia, R.-G., Melnick, A. M., Cerchietti, L. C. A., & Singh, A. K. (2015) · Biomaterials · doi:10.1016/j.biomaterials.2015.09.007 · Cited by 93 · see citing works
Self-citationChen, M., Zhu, N., Liu, X., Laurent, B., Tang, Z., Eng, R., Shi, Y., Armstrong, S. A., & Roeder, R. G. (2015) · Genes & Development · doi:10.1101/gad.267278.115 · Cited by 93 · see citing works
Sabhachandani, P., Sarkar, S., McKenney, S., Ravi, D., Evens, A. M., & Konry, T. (2018) · Journal of Controlled Release · doi:10.1016/j.jconrel.2018.12.010 · Cited by 86 · see citing works
Landsburg, D. J., Petrich, A. M., Abramson, J. S., Sohani, A. R., Press, O. W., Cassaday, R. D., Chávez, J. C., Song, K., Zelenetz, A. D., Gandhi, M. D., et al. (2015) · Cancer · doi:10.1002/cncr.29781 · Cited by 87 · see citing works
BCL6 as a therapeutic target for lymphoma
Leeman‐Neill, R. J., & Bhagat, G. (2017) · Expert Opinion on Therapeutic Targets · doi:10.1080/14728222.2018.1420782 · Cited by 85 · see citing works
Current perspectives and trend of computer-aided drug design: a review and bibliometric analysis
Wu, Z., Chen, S., Wang, Y., Li, F., Xu, H., Li, M., Zeng, Y., Wu, Z., & Gao, Y. (2024) · International Journal of Surgery · doi:10.1097/js9.0000000000001289 · Cited by 92 · see citing works
Regulation of hematopoietic development by ZBTB transcription factors
Maeda, T. (2016) · International Journal of Hematology · doi:10.1007/s12185-016-2035-x · Cited by 85 · see citing works
Yu, W., Lakkaraju, S. K., Raman, E. P., Fang, L., & MacKerell, A. D. (2015) · Journal of Chemical Information and Modeling · doi:10.1021/ci500691p · Cited by 84 · see citing works
Self-citationSOX4 enables oncogenic survival signals in acute lymphoblastic leukemia
Ramezani-Rad, P., Geng, H., Hurtz, C., Chan, L. N., Chen, Z., Jumaa, H., Melnick, A. M., Paietta, E. M., Carroll, W. L., Willman, C. L., et al. (2012) · Blood · doi:10.1182/blood-2012-05-428938 · Cited by 83 · see citing works
Self-citationKapoor, I., Li, Y., Sharma, A., Zhu, H., Bodo, J., Xu, W., Hsi, E. D., Hill, B. T., & Almasan, A. (2019) · Cell Death and Disease · doi:10.1038/s41419-019-2158-0 · Cited by 79 · see citing works
BCL6 promotes glioma and serves as a therapeutic target
Xu, L., Chen, Y., Dutra‐Clarke, M., Mayakonda, A., Hazawa, M., Savinoff, S. E., Doan, N., SAID, J. W., Yong, W. H., Watkins, A., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1609758114 · Cited by 72 · see citing works
B cells in chronic graft-versus-host disease
McManigle, W. C., Youssef, A., & Sarantopoulos, S. (2019) · Human Immunology · doi:10.1016/j.humimm.2019.03.003 · Cited by 77 · see citing works
Molecular pathogenesis of germinal center‐derived B cell lymphomas
Pasqualucci, L. (2019) · Immunological Reviews · doi:10.1111/imr.12745 · Cited by 74 · see citing works
New effector functions and regulatory mechanisms of BCL6 in normal and malignant lymphocytes
Bunting, K. L., & Melnick, A. M. (2013) · Current Opinion in Immunology · doi:10.1016/j.coi.2013.05.003 · Cited by 75 · see citing works
Self-citationBellenie, B. R., Cheung, K.-M. J., Varela, A., Pierrat, O. A., Collie, G. W., Box, G. M., Bright, M. D., Gowan, S., Hayes, A., Rodrigues, M. J., et al. (2020) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b02076 · Cited by 74 · see citing works
Lu, X., Fernando, T. M., Lossos, C., Yusufova, N., Liu, F., Fontán, L., Durant, M., Geng, H., Melnick, J., Luo, Y., et al. (2018) · Blood · doi:10.1182/blood-2018-02-831438 · Cited by 72 · see citing works
Self-citationSite-Identification by Ligand Competitive Saturation (SILCS) assisted pharmacophore modeling
Yu, W., Lakkaraju, S. K., Raman, E. P., & MacKerell, A. D. (2014) · Journal of Computer-Aided Molecular Design · doi:10.1007/s10822-014-9728-0 · Cited by 70 · see citing works
Self-citationEpigenetics and B-cell lymphoma
Shaknovich, R., & Melnick, A. M. (2011) · Current Opinion in Hematology · doi:10.1097/moh.0b013e32834788cf · Cited by 70 · see citing works
Self-citationBalance between immunoregulatory B cells and plasma cells drives pancreatic tumor immunity
Mirlekar, B., Wang, Y., Li, S., Zhou, M., Entwistle, S., Buysscher, T. D., Morrison, A. B., Herrera, G., Harris, C., Vincent, B. G., et al. (2022) · Cell Reports Medicine · doi:10.1016/j.xcrm.2022.100744 · Cited by 68 · see citing works
The role of BCL6 in lymphomas and routes to therapy
Wagner, S. D., Ahearne, M. J., & Ferrigno, P. K. (2010) · British Journal of Haematology · doi:10.1111/j.1365-2141.2010.08420.x · Cited by 68 · see citing works
The genetic basis of diffuse large B-cell lymphoma
Pasqualucci, L. (2013) · Current Opinion in Hematology · doi:10.1097/moh.0b013e3283623d7f · Cited by 67 · see citing works
Inhibition of demethylase KDM6B sensitizes diffuse large B-cell lymphoma to chemotherapeutic drugs
Mathur, R., Sehgal, L., Havránek, O., Köhrer, S., Khashab, T., Jain, N. K., Burger, J. A., Neelapu, S. S., Davis, R. E., & Samaniego, F. (2016) · Haematologica · doi:10.3324/haematol.2016.144964 · Cited by 67 · see citing works
Maslon, M. M., & Hupp, T. R. (2010) · Trends in Cell Biology · doi:10.1016/j.tcb.2010.06.005 · Cited by 66 · see citing works
Gao, C., Dimitrov, T., Yong, K. J., Tatetsu, H., Jeong, H.-W., Luo, H. R., Bradner, J. E., Tenen, D. G., & Chai, L. (2013) · Blood · doi:10.1182/blood-2012-04-424275 · Cited by 65 · see citing works
The Epigenetic Basis of Diffuse Large B-Cell Lymphoma
Jiang, Y., & Melnick, A. M. (2015) · Seminars in Hematology · doi:10.1053/j.seminhematol.2015.01.003 · Cited by 66 · see citing works
Self-citationMcLachlan, T., Matthews, W. C., Jackson, E. R., Staudt, D. E., Douglas, A. M., Findlay, I. J., Persson, M. L., Duchatel, R. J., Mannan, A., Germon, Z. P., et al. (2022) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-22-0567 · Cited by 60 · see citing works
BTB domains: A structural view of evolution, multimerization, and protein–protein interactions
Bonchuk, A. N., Balagurov, K., & Georgiev, P. G. (2022) · BioEssays · doi:10.1002/bies.202200179 · Cited by 64 · see citing works
Stengel, K. R., & Hiebert, S. W. (2014) · Antioxidants and Redox Signaling · doi:10.1089/ars.2014.5915 · Cited by 61 · see citing works
Bujisic, B., Gassart, A. D., Tallant, R., Demaria, O., Zaffalon, L., Chelbi, S. T., Gilliet, M. F., Bertoni, F., & Martinon, F. (2017) · Blood · doi:10.1182/blood-2016-09-741348 · Cited by 60 · see citing works
Khanna, M., Wang, F., Jo, I., Knabe, W. E., Wilson, S. M., Li, L., Bum‐Erdene, K., Li, J., Sledge, G. W., Khanna, R., et al. (2011) · ACS Chemical Biology · doi:10.1021/cb200180m · Cited by 58 · see citing works
Metz, A., Ciglia, E., & Gohlke, H. (2012) · Current Pharmaceutical Design · doi:10.2174/138161212802651553 · Cited by 57 · see citing works
Kamada, Y., Sakai, N., Sogabe, S., Ida, K., Oki, H., Sakamoto, K., Lane, W., Snell, G., Iida, M., Imaeda, Y., et al. (2017) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.7b00313 · Cited by 57 · see citing works
Recent Advances on NOTCH Signaling in T-ALL
Tzoneva, G., & Ferrando, A. A. (2012) · Current topics in microbiology and immunology · doi:10.1007/82_2012_232 · Cited by 56 · see citing works
Mechanisms of action of BCL6 during germinal center B cell development
Huang, C., & Melnick, A. M. (2015) · Science China Life Sciences · doi:10.1007/s11427-015-4919-z · Cited by 53 · see citing works
Self-citationMa, H. S., Greenblatt, S. M., Shirley, C. M., Duffield, A. S., Bruner, J. K., Li, L., Nguyen, B., Jung, E. E., Aplan, P. D., Ghiaur, G., et al. (2016) · Blood · doi:10.1182/blood-2015-05-646786 · Cited by 56 · see citing works
Kim, G., Das, R., Goduni, L., McClellan, S. A., Hazlett, L. D., & Mahabeleshwar, G. H. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.738617 · Cited by 56 · see citing works
Cierpicki, T., & Grembecka, J. (2015) · Immunological Reviews · doi:10.1111/imr.12244 · Cited by 53 · see citing works
Yu, W., Raman, E. P., Lakkaraju, S. K., Fang, L., & MacKerell, A. D. (2015) · Biophysical Journal · doi:10.1016/j.bpj.2014.11.095 · Cited by 52 · see citing works
Self-citationPonzoni, M., Issa, S., Batchelor, T. T., & Rubenstein, J. L. (2013) · Annals of Oncology · doi:10.1093/annonc/mdt385 · Cited by 50 · see citing works
Zhu, Q., Li, Y., Guo, Y., Hu, L., Xiao, Z., Liu, X. Z., Wang, J., Xu, Q., & Tong, X. (2019) · Journal of Cellular and Molecular Medicine · doi:10.1111/jcmm.14601 · Cited by 48 · see citing works
Epigenetic Programing of B-Cell Lymphoma by BCL6 and Its Genetic Deregulation
Yang, H., & Green, M. R. (2019) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2019.00272 · Cited by 48 · see citing works
Teng, M., Ficarro, S. B., Yoon, H., Che, J., Zhou, J., Fischer, E. S., Marto, J. A., Zhang, T., & Gray, N. S. (2020) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00111 · Cited by 48 · see citing works
Double-hit lymphomas: current paradigms and novel treatment approaches
Dunleavy, K. M. (2014) · Hematology · doi:10.1182/asheducation-2014.1.107 · Cited by 46 · see citing works
BCL6 is a negative prognostic factor and exhibits pro-oncogenic activity in ovarian cancer.
Wang, Y.-Q., Xu, M., Weng, W.-W., Wei, P., Yang, Y.-S., & Du, X. (2015) · Europe PMC (PubMed Central) · Cited by 45 · see citing works
Pei, H., Guo, W., Peng, Y., Xiong, H., & Chen, Y. (2022) · Medicinal Research Reviews · doi:10.1002/med.21886 · Cited by 45 · see citing works
Treatment strategies for aggressive lymphomas: what works?
Wilson, W. H. (2013) · Hematology · doi:10.1182/asheducation-2013.1.584 · Cited by 44 · see citing works
Liu, Y., Yang, Z., Lai, P., Huang, Z., Sun, X., Zhou, T., He, C., & Liu, X. (2020) · Theranostics · doi:10.7150/thno.43731 · Cited by 43 · see citing works
Novel Therapeutics for Aggressive Non-Hodgkin's Lymphoma
Mahadevan, D., & Fisher, R. I. (2011) · Journal of Clinical Oncology · doi:10.1200/jco.2010.32.7171 · Cited by 43 · see citing works
Boston, S. R., Deshmukh, R. R., Strome, S. E., Priyakumar, U. D., MacKerell, A. D., & Shapiro, P. (2011) · BMC Cancer · doi:10.1186/1471-2407-11-7 · Cited by 43 · see citing works
Self-citationTargeting Protein-Protein Interactions for Drug Discovery
Fry, D. C. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-2425-7_6 · Cited by 43 · see citing works
- Authors
- Cerchietti, L. C., Ghetu, A. F., Zhu, X., Da Silva, G. F., Zhong, S., Matthews, M., Bunting, K. L., Polo, J. M., Farès, C., Arrowsmith, C. H., Yang, S. N., Garcia, M., Coop, A., MacKerell, A. D., Privé, G. G., & Melnick, A.
- Affiliations
- Cornell University (US)
- University of Maryland, Baltimore (US)
- Albert Einstein College of Medicine (US)
- University of Toronto (CA)
- Corresponding author
- MacKerell, Alexander D.
- Privé, Gilbert G.
- Melnick, Ari
- ORCID
- Venue
- Cancer Cell
- Publisher
- Elsevier BV
- Published
- 2010-04
- Volume
- 17
- Issue
- 4
- Pages
- 400-411
- ISSN
- 1535-6108 (ISSN-L)
- PMC
- PMC2858395
- OpenAlex
- W2018796139
- Cited by
- 288
- References
- 53
- Citations by year
- 2026: 4 · 2025: 13 · 2024: 9 · 2023: 9 · 2022: 13 · 2021: 12 · 2020: 20 · 2019: 19 · 2018: 16 · 2017: 15 · 2016: 30 · 2015: 28 · 2014: 24 · 2013: 28 · 2012: 22
- FWCI
- 16.50
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cancer Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Max Planck Digital Library (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, cc-by)
- Funders
- Canadian Cancer Society
- Leukemia and Lymphoma Society
- National Cancer Institute (R01 CA104348)
- National Institutes of Health (HL082670, CA107331, CA120215)
- University of Maryland Foundation Inc.
- Chemotherapy Foundation
- Samuel Waxman Cancer Research Foundation
- Topics
- Health Sciences › Medicine › Pathology and Forensic Medicine › Lymphoma Diagnosis and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Physical Sciences › Computer Science › Computational Theory and Mathematics › Computational Drug Discovery Methods
- Keywords
- BCL6, diffuse large B-cell lymphoma, small molecule inhibitors, BTB domain, transcriptional repressor, computer-aided drug design, xenotransplantation, oncogenes
- MeSH terms
- Animals, Cell Division, Cell Survival, Humans, Mice, Inbred C57BL, Models, Molecular, Protein Conformation, Proto-Oncogene Proteins, Repressor Proteins, Transcription, Genetic, Zinc Fingers, Lymphoma, Large B-Cell, Diffuse, Crystallography, X-Ray, Mice
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