Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity
Zhang, Jingli A., Mortazavi, Ali, Williams, Brian A., Wold, Barbara J., Rothenberg, Ellen V.·2012·Cell
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- Systems-Level Analysis of Innate ImmunityDaniel E. Zak, Vincent C. Tam, Alan A. Aderem · 2014 · Annual Review of Immunology
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- Regulation of gene expression dynamics during developmental transitions by the Ikaros transcription factorTeresita L. Arenzana, Hilde Schjerven, Stephen T. Smale · 2015 · Genes & Development
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- T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1Haichuan Zhu, Liuzhen Zhang, Yilin Wu, Bingjie Dong, Weilong Guo, Mei Wang, Lu Yang, Xiaoying Fan, Yuliang Tang, Ningshu Liu et al. · 2018 · eLife
- Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and humanEllen V. Rothenberg · 2021 · Experimental Hematology
- Exploiting genomics and natural genetic variation to decode macrophage enhancersCasey E. Romanoski, Verena M. Link, Sven Heinz, Christopher K. Glass · 2015 · Trends in Immunology
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- Distinct Notch1 and BCL11B requirements mediate human γδ/αβ T cell developmentAnne‐Catherine Dolens, Kaat Durinck, Marieke Lavaert, Joni Van der Meulen, Imke Velghe, Jelle De Medts, Karin Weening, Juliette Roels, Katrien De Mulder A, Pieter‐Jan Volders et al. · 2020 · EMBO Reports
- GATA-3 is a proto-oncogene in T-cell lymphoproliferative neoplasmsXiangrong Geng, Chenguang Wang, Xin Gao, Pinki Chowdhury, Jonathan Weiss, José A. Villegas, Badeia Saed, Thilini Perera, Ying Hu, John C. Reneau et al. · 2022 · Blood Cancer Journal
- Histone demethylases UTX and JMJD3 are required for NKT cell development in miceDaniel L. Northrup, Ryoji Yagi, Kairong Cui, William R. Proctor, Chaochen Wang, Katarzyna Placek, Lance R. Pohl, Rong‐Fu Wang, Kai Ge, Jinfang Zhu et al. · 2017 · Cell & Bioscience
- Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanismsBoyoung Shin, Wen Zhou, Jue Wang, Fan Gao, Ellen V. Rothenberg · 2023 · Nature Immunology
- Lineages, cell types and functional states: a genomic viewRenato Ostuni, Gioacchino Natoli · 2013 · Current Opinion in Cell Biology
- Erasing gametes to write blastocysts: metabolism as the new player in epigenetic reprogrammingMarcella Pecora Milazzotto, Camila Bruna de Lima, Aldcejam Martins da Fonseca, Érika Cristina dos Santos, Jéssica Ispada · 2020 · Animal Reproduction
- Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cellsSarah A. LaMere, Ryan C. Thompson, H. Kiyomi Komori, Adam Mark, Daniel R. Salomon · 2016 · Genes and Immunity
- Epigenomic signatures of sarcomatoid differentiation to guide the treatment of renal cell carcinomaTalal El Zarif, Karl Semaan, Marc Eid, Ji-Heui Seo, Simon Garinet, Matthew P. Davidsohn, Pranshu Sahgal, Brad J. Fortunato, John Canniff, Amin H. Nassar et al. · 2024 · Cell Reports
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- TAL1 activation in T-cell acute lymphoblastic leukemia: a novel oncogenic 3’ neo-enhancerSmith, Charlotte, Goyal, Ashish, Weichenhan, Dieter, Allemand, Eric, Mayakonda, Anand, Toprak, Umut, Riedel, Anna, Balducci, Estelle, Manojkumar, Manisha, Pejkovska, Anastasija et al. · 2023 · Haematologica
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- Tunable, division-independent control of gene activation timing by a polycomb switchNicholas A. Pease, Phuc Hong Nguyen, Marcus A. Woodworth, Kenneth K.H. Ng, Blythe Irwin, Joshua C. Vaughan, Hao Yuan Kueh · 2021 · Cell Reports
- Hierarchical assembly and disassembly of a transcriptionally active RAG locus in CD4+CD8+ thymocytesAbani Kanta Naik, Aaron T. Byrd, Aaron C. K. Lucander, Michael S. Krangel · 2018 · The Journal of Experimental Medicine
- Epigenetic dynamics during CD4+ T cells lineage commitmentRamón María Alvargonzález Rodríguez, Carlos López‐Larrea, Beatriz Suárez-Álvarez · 2015 · The International Journal of Biochemistry & Cell Biology
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- Transcription Factors Directing Th2 Differentiation: Gata-3 Plays a Dominant RoleAnne O’Garra, Leona Gabryšová · 2016 · The Journal of Immunology
- Signatures of DNA target selectivity by ETS transcription factorsGregory M.K. Poon, Hye Mi Kim · 2017 · Transcription
- Thpok‐independent repression of R unx3 by G ata3 during CD 4+ T ‐cell differentiation in the thymusYumei Xiong, Ehydel Castro, Ryoji Yagi, Jinfang Zhu, Renaud Lesourne, Paul E. Love, Lionel Feigenbaum, Rémy Bosselut · 2013 · European Journal of Immunology
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- Alternative Enhancer Usage and Targeted Polycomb Marking Hallmark Promoter Choice during T Cell DifferentiationMuhammad Ahmad Maqbool, Léo Pioger, Amal Zine El Aabidine, Nezih Karasu, Anne Marie Molitor, Lan T.M. Dao, Guillaume Charbonnier, François Van Laethem, Romain Fenouil, Frédéric Koch et al. · 2020 · Cell Reports
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- Cellular identity at the single-cell levelAhmet F. Coskun, Umut Eser, Saiful Islam · 2016 · Molecular BioSystems
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- Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitmentOriana Romano, Clelia Peano, Guidantonio Malagoli Tagliazucchi, Luca Petiti, Valentina Poletti, Fabienne Cocchiarella, Ermanno Rizzi, Marco Severgnini, Alessia Cavazza, Claudia Rossi et al. · 2016 · Scientific Reports
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- High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologiesMohammad Salma, Charlotte Andrieu‐Soler, Virginie Deleuze, Éric Soler · 2023 · Blood Cells Molecules and Diseases
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- Correlation of Gene Expression and Genome Mutation in Single B-CellsJoshua A. Weinstein, Xun Zeng, Yueh‐hsiu Chien, Stephen R. Quake · 2013 · PLoS ONE
- T-cell receptor α enhancer is inactivated in αβ T lymphocytesBeatriz del Blanco, Úrsula Angulo, Michael S. Krangel, Cristina Hernández-Munaín · 2015 · Proceedings of the National Academy of Sciences
- Transcription factors and target genes of pre-TCR signalingCristina López‐Rodríguez, Jose F. Aramburu, Rosa Berga-Bolaños · 2015 · Cellular and Molecular Life Sciences