Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity

Zhang, Jingli A., Mortazavi, Ali, Williams, Brian A., Wold, Barbara J., Rothenberg, Ellen V.·2012·Cell

Cited by (338)

Items 101–200 of 338

  1. SCL/TAL1 in Hematopoiesis and Cellular Reprogramming
    T Hoang, J.A. Lambert, Richard Martin · 2016 · Current topics in developmental biology/Current Topics in Developmental Biology
  2. Antenatal endogenous and exogenous glucocorticoids and their impact on immune ontogeny and long-term immunity
    María Emilia Solano, Megan C. Holmes, Paul R. Mittelstadt, Karen E. Chapman, Eva Tolosa · 2016 · Seminars in Immunopathology
  3. Effects of high progesterone level on the day of human chorionic gonadotrophin administration in in vitro fertilization cycles on epigenetic modification of endometrium in the peri-implantation period
    Yujing Xiong, Jianzhang Wang, Liu Liu, Xiaoyan Chen, Hui Xu, Tin Chiu Li, Chi Chiu Wang, Songying Zhang · 2017 · Fertility and Sterility
  4. Epigenome analysis links gene regulatory elements in group 2 innate lymphocytes to asthma susceptibility
    Ralph Stadhouders, Bobby W. S. Li, Marjolein J. W. de Bruijn, Antonio Gómez, Tata Nageswara Rao, Hans Jörg Fehling, Wilfred F. J. van IJcken, Ai Ing Lim, James P. Di Santo, Thomas Graf et al. · 2018 · Journal of Allergy and Clinical Immunology
  5. Effects of temperature, soil substrate, and microbial community on carbon mineralization across three climatically contrasting forest sites
    Zuoxin Tang, Xiaolu Sun, Zhongkui Luo, Nianpeng He, Osbert Jianxin Sun · 2017 · Ecology and Evolution
  6. Ezh2 and Runx1 Mutations Collaborate to Initiate Lympho-Myeloid Leukemia in Early Thymic Progenitors
    Booth, Christopher A.G., Barkas, Nikolaos, Neo, Wen Hao, Boukarabila, Hanane, Soilleux, Elizabeth J., Giotopoulos, George, Farnoud, Noushin, Giustacchini, Alice, Ashley, Neil, Carrelha, Joana et al. · 2018 · Cancer Cell
  7. Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b
    Wen Zhou, Fan Gao, Maile Romero-Wolf, Suin Jo, Ellen V. Rothenberg · 2022 · Science Immunology
  8. Site- and allele-specific polycomb dysregulation in T-cell leukaemia
    Jean‐Marc Navarro, Aurore Touzart, Lydie C. Pradel, Marie Loosveld, Myriam Koubi, Romain Fenouil, Sandrine Le Noir, Muhammad Ahmad Maqbool, Ester Morgado, Claude Grégoire et al. · 2015 · Nature Communications
  9. An Erg-driven transcriptional program controls B cell lymphopoiesis
    Ashley P. Ng, Hannah D. Coughlan, Soroor Hediyeh-zadeh, Kira Behrens, Timothy M. Johanson, Michael Sze Yuan Low, Charles C. Bell, Omer Gilan, Yih-Chih Chan, Andrew J. Kueh et al. · 2020 · Nature Communications
  10. Loss of CD44dim Expression from Early Progenitor Cells Marks T-Cell Lineage Commitment in the Human Thymus
    Kirsten Canté-Barrett, Rui D. Mendes, Yunlei Li, Eric M. Vroegindeweij, Karin Pike‐Overzet, Tamara Wabeke, Anton W. Langerak, Rob Pieters, Frank J. T. Staal, Jules P.P. Meijerink · 2017 · Frontiers in Immunology
  11. Suppression of ILC2 differentiation from committed T cell precursors by E protein transcription factors
    Liangyue Qian, Sandra Bajaña, Constantin Georgescu, Vincent Peng, Hongcheng Wang, Indra Adrianto, Marco Colonna, José Alberola‐Ila, Jonathan D. Wren, Xiao-Hong Sun · 2019 · The Journal of Experimental Medicine
  12. Coupling of T cell receptor specificity to natural killer T cell development by bivalent histone H3 methylation
    Marc‐Werner Dobenecker, Jong Kyong Kim, Jonas Marcello, Terry Fang, Rab K. Prinjha, Rémy Bosselut, Alexander Tarakhovsky · 2015 · The Journal of Experimental Medicine
  13. Epigenomic PU.1-VDR crosstalk modulates vitamin D signaling
    Sabine Seuter, Antonio Neme, Carsten Carlberg · 2017 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  14. Regulation of the transcriptional program by DNA methylation during human αβ T-cell development
    Ramón María Alvargonzález Rodríguez, Beatriz Suárez-Álvarez, David Mosén-Ansorena, Marina García-Peydró, Patricia Fuentes, María Jesús García-León, Aintzane González-Lahera, Nuria Macías Cámara, Marı́a L. Toribio, Ana María Aransay et al. · 2014 · Nucleic Acids Research
  15. Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation
    Pierre Cauchy, Muhammad Ahmad Maqbool, Joaquin Zacarias Cabeza, Laurent Vanhille, Frédéric Koch, Romain Fenouil, Marta Gut, Ivo Glynne Gut, Marı́a Angélica Santana, Aurélien Griffon et al. · 2015 · Nucleic Acids Research
  16. RAG-mediated DNA double-strand breaks activate a cell type–specific checkpoint to inhibit pre–B cell receptor signals
    Jeffrey J. Bednarski, Ruchi Pandey, Emily Schulte, Lynn S. White, Bo-Ruei Chen, Gabriel J. Sandoval, Masako Kohyama, Malay Haldar, Andrew Nickless, Amanda Trott et al. · 2016 · The Journal of Experimental Medicine
  17. Transcriptional regulation of adaptive and innate lymphoid lineage specification
    Camille A. Spinner, Vanja Lazarevic · 2020 · Immunological Reviews
  18. Systems-Level Analysis of Innate Immunity
    Daniel E. Zak, Vincent C. Tam, Alan A. Aderem · 2014 · Annual Review of Immunology
  19. Downregulation of E Protein Activity Augments an ILC2 Differentiation Program in the Thymus
    Hong-Cheng Wang, Liangyue Qian, Ying Lan Zhao, Joni Mengarelli, Indra Adrianto, Courtney G. Montgomery, Joseph F. Urban, Kar-Ming A. Fung, Xiao-Hong Sun · 2017 · The Journal of Immunology
  20. CXXC finger protein 1 is critical for T-cell intrathymic development through regulating H3K4 trimethylation
    Wenqiang Cao, Jing Guo, Xiaofeng Wen, Miao Li, Feng Lin, Guanxin Xu, Ruoyu Ma, Shengxia Yin, Zhaoyuan Hui, Tingting Chen et al. · 2016 · Nature Communications
  21. Chromatin Accessibility and Interactions in the Transcriptional Regulation of T Cells
    Peng Li, Warren J. Leonard · 2018 · Frontiers in Immunology
  22. Prognostic and Predictive Factors in Patients With Chronic Lymphocytic Leukemia: Relevant in the Era of Novel Treatment Approaches?
    Daniel Mertens, Stephan Stilgenbauer · 2014 · Journal of Clinical Oncology
  23. Understanding transcriptional regulatory networks using computational models
    Bing He, Kai Tan · 2016 · Current Opinion in Genetics & Development
  24. Whole-genome noncoding sequence analysis in T-cell acute lymphoblastic leukemia identifies oncogene enhancer mutations
    Shaoyan Hu, Maoxiang Qian, Hui Zhang, Yu Amanda Guo, Jin Yang, Xujie Zhao, Hailong He, Jun Lu, Jian Pan, Meimei Chang et al. · 2017 · Blood
  25. Jarid2 is induced by TCR signalling and controls iNKT cell maturation
    Renata M. Pereira, Gustavo Martínez, Isaac Engel, Fernando Cruz‐Guilloty, Bianca A. Barboza, Ageliki Tsagaratou, Chan‐Wang Jerry Lio, Leslie J. Berg, Youngsook Lee, Mitchell Kronenberg et al. · 2014 · Nature Communications
  26. The role of chromatin dynamics in immune cell development
    Deborah R. Winter, Ido Amit · 2014 · Immunological Reviews
  27. PTPN2 regulates T cell lineage commitment and αβ versus γδ specification
    Florian Wiede, Jarrod A. Dudakov, Kun‐Hui Lu, Garron T. Dodd, Tariq Butt, Dale Ian Godfrey, Andreas Strasser, Richard L. Boyd, Tony Tiganis · 2017 · The Journal of Experimental Medicine
  28. A crucial role for the homeodomain transcription factor Hhex in lymphopoiesis
    Jacob T. Jackson, Chayanica Nasa, Wei Shi, Nicholas D. Huntington, Clifford W. Bogue, Warren S. Alexander, Matthew Paul McCormack · 2014 · Blood
  29. An enriched network motif family regulates multistep cell fate transitions with restricted reversibility
    Yujie Ye, Xin Kang, Jordan Bailey, Chunhe Li, Tian Hong · 2019 · PLoS Computational Biology
  30. Transcription Factor Networks Directing the Development, Function, and Evolution of Innate Lymphoid Effectors
    Joonsoo Kang, Nidhi Malhotra · 2015 · Annual Review of Immunology
  31. NextPBM: a platform to study cell-specific transcription factor binding and cooperativity
    Nima Mohaghegh, D. Bray, J. Keenan, Ashley Penvose, K. Andrilenas, Vijendra Ramlall, T. Siggers · 2019 · Nucleic Acids Research
  32. Active enhancers are delineated de novo during hematopoiesis, with limited lineage fidelity among specified primary blood cells
    Annouck Luyten, Chongzhi Zang, X. Shirley Liu, Ramesh A. Shivdasani · 2014 · Genes & Development
  33. The TH1 cell lineage-determining transcription factor T-bet suppresses TH2 gene expression by redistributing GATA3 away from TH2 genes
    Arnulf Hertweck, Maria Vila de Mucha, Paul R. Barber, Robert Dagil, Hayley Porter, Andres Ramos, Graham M. Lord, Richard G. Jenner · 2022 · Nucleic Acids Research
  34. Genome-wide comparison of PU.1 and Spi-B binding sites in a mouse B lymphoma cell line
    Lauren A. Solomon, Stephen K. H. Li, Jan Piskorz, Li Xu, Rodney P. DeKoter · 2015 · BMC Genomics
  35. H3K27 Methylation Dynamics during CD4 T Cell Activation: Regulation of JAK/STAT and IL12RB2 Expression by JMJD3
    Sarah A. LaMere, Ryan C. Thompson, Xiangzhi Meng, H. Kiyomi Komori, Adam Mark, Daniel R. Salomon · 2017 · The Journal of Immunology
  36. Strength in diversity: Phenotypic, functional, and molecular heterogeneity within the memory B cell repertoire
    Kim L. Good‐Jacobson · 2018 · Immunological Reviews
  37. Super-Enhancer Redistribution as a Mechanism of Broad Gene Dysregulation in Repeatedly Drug-Treated Cancer Cells
    Qi Ma, Feng Yang, Carlos Mackintosh, Ranveer Singh Jayani, Soohwan Oh, Chunyu Jin, Sreejith J. Nair, Daria Merkurjev, Wubin Ma, Stephanie Allen et al. · 2019 · Cell Reports
  38. EZH2 Regulates the Developmental Timing of Effectors of the Pre–Antigen Receptor Checkpoints
    Jennifer A. Jacobsen, Jennifer Woodard, Malay Mandal, Marcus R. Clark, Elizabeth T. Bartom, Mikael Sigvardsson, Barbara L. Kee · 2017 · The Journal of Immunology
  39. GATA factor transcriptional activity: Insights from genome‐wide binding profiles
    Oriana Romano, Annarita Miccio · 2019 · IUBMB Life
  40. Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains
    Stephens, Dominique C., Poon, Gregory M. K. · 2016 · Nucleic Acids Research
  41. A CRISPR screen identifies genes controlling Etv2 threshold expression in murine hemangiogenic fate commitment
    Haiyong Zhao, Kyunghee Choi · 2017 · Nature Communications
  42. A Shared Regulatory Element Controls the Initiation of Tcf7 Expression During Early T Cell and Innate Lymphoid Cell Developments
    Christelle Harly, Devin Kenney, Yueqiang Wang, Yi Ding, Yongge Zhao, Parirokh Awasthi, Avinash Bhandoola · 2020 · Frontiers in Immunology
  43. Computational modelling of T-cell formation kinetics: output regulated by initial proliferation-linked deferral of developmental competence
    Manesso, Erica, Chickarmane, Vijay, Kueh, Hao Yuan, Rothenberg, Ellen V., Peterson, Carsten · 2013 · Journal of The Royal Society Interface
  44. Regulation of gene expression dynamics during developmental transitions by the Ikaros transcription factor
    Teresita L. Arenzana, Hilde Schjerven, Stephen T. Smale · 2015 · Genes & Development
  45. Hematopoiesis and T‐cell specification as a model developmental system
    Rothenberg, Ellen V., Kueh, Hao Yuan, Yui, Mary A., Zhang, Jingli A. · 2016 · Immunological Reviews
  46. T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1
    Haichuan Zhu, Liuzhen Zhang, Yilin Wu, Bingjie Dong, Weilong Guo, Mei Wang, Lu Yang, Xiaoying Fan, Yuliang Tang, Ningshu Liu et al. · 2018 · eLife
  47. Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and human
    Ellen V. Rothenberg · 2021 · Experimental Hematology
  48. Exploiting genomics and natural genetic variation to decode macrophage enhancers
    Casey E. Romanoski, Verena M. Link, Sven Heinz, Christopher K. Glass · 2015 · Trends in Immunology
  49. Epigenetic histone modifications and master regulators as determinants of context dependent nuclear receptor activity in bone cells
    John Wesley Pike, Mark B. Meyer, Hillary C. St. John, Nancy A. Benkusky · 2015 · Bone
  50. Distinct Notch1 and BCL11B requirements mediate human γδ/αβ T cell development
    Anne‐Catherine Dolens, Kaat Durinck, Marieke Lavaert, Joni Van der Meulen, Imke Velghe, Jelle De Medts, Karin Weening, Juliette Roels, Katrien De Mulder A, Pieter‐Jan Volders et al. · 2020 · EMBO Reports
  51. GATA-3 is a proto-oncogene in T-cell lymphoproliferative neoplasms
    Xiangrong Geng, Chenguang Wang, Xin Gao, Pinki Chowdhury, Jonathan Weiss, José A. Villegas, Badeia Saed, Thilini Perera, Ying Hu, John C. Reneau et al. · 2022 · Blood Cancer Journal
  52. Histone demethylases UTX and JMJD3 are required for NKT cell development in mice
    Daniel L. Northrup, Ryoji Yagi, Kairong Cui, William R. Proctor, Chaochen Wang, Katarzyna Placek, Lance R. Pohl, Rong‐Fu Wang, Kai Ge, Jinfang Zhu et al. · 2017 · Cell & Bioscience
  53. Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms
    Boyoung Shin, Wen Zhou, Jue Wang, Fan Gao, Ellen V. Rothenberg · 2023 · Nature Immunology
  54. Lineages, cell types and functional states: a genomic view
    Renato Ostuni, Gioacchino Natoli · 2013 · Current Opinion in Cell Biology
  55. Erasing gametes to write blastocysts: metabolism as the new player in epigenetic reprogramming
    Marcella Pecora Milazzotto, Camila Bruna de Lima, Aldcejam Martins da Fonseca, Érika Cristina dos Santos, Jéssica Ispada · 2020 · Animal Reproduction
  56. Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells
    Sarah A. LaMere, Ryan C. Thompson, H. Kiyomi Komori, Adam Mark, Daniel R. Salomon · 2016 · Genes and Immunity
  57. Epigenomic signatures of sarcomatoid differentiation to guide the treatment of renal cell carcinoma
    Talal El Zarif, Karl Semaan, Marc Eid, Ji-Heui Seo, Simon Garinet, Matthew P. Davidsohn, Pranshu Sahgal, Brad J. Fortunato, John Canniff, Amin H. Nassar et al. · 2024 · Cell Reports
  58. Tricarboxylic Acid Cycle Metabolites as Mediators of DNA Methylation Reprogramming in Bovine Preimplantation Embryos
    Jéssica Ispada, Aldcejam Martins da Fonseca, Camila Bruna de Lima, Érika Cristina dos Santos, Patrícia Kubo Fontes, Marcelo Fábio Gouveia Nogueira, Vinicius Lourenço da Silva, Fernanda Nascimento Almeida, Saul C. Leite, James Lee Chitwood et al. · 2020 · International Journal of Molecular Sciences
  59. Epigenetic Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b
    Tom Sidwell, Ellen V. Rothenberg · 2021 · Frontiers in Immunology
  60. TAL1 activation in T-cell acute lymphoblastic leukemia: a novel oncogenic 3’ neo-enhancer
    Smith, Charlotte, Goyal, Ashish, Weichenhan, Dieter, Allemand, Eric, Mayakonda, Anand, Toprak, Umut, Riedel, Anna, Balducci, Estelle, Manojkumar, Manisha, Pejkovska, Anastasija et al. · 2023 · Haematologica
  61. The epigenetic landscape of fate decisions in T cells
    Atishay Jay, Carlos M. Pondevida, Golnaz Vahedi · 2025 · Nature Immunology
  62. Epigenetic obstacles encountered by transcription factors: reprogramming against all odds
    Casey A. Gifford, Alexander Meissner · 2012 · Current Opinion in Genetics & Development
  63. Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq
    Janus Schou Jakobsen, Frederik Otzen Bagger, Marie Sigurd Hasemann, Mikkel Bruhn Schuster, Anne-Katrine Frank, Johannes Waage, Kristoffer Vitting‐Seerup, Bo Torben Porse · 2015 · BMC Genomics
  64. Tunable, division-independent control of gene activation timing by a polycomb switch
    Nicholas A. Pease, Phuc Hong Nguyen, Marcus A. Woodworth, Kenneth K.H. Ng, Blythe Irwin, Joshua C. Vaughan, Hao Yuan Kueh · 2021 · Cell Reports
  65. Hierarchical assembly and disassembly of a transcriptionally active RAG locus in CD4+CD8+ thymocytes
    Abani Kanta Naik, Aaron T. Byrd, Aaron C. K. Lucander, Michael S. Krangel · 2018 · The Journal of Experimental Medicine
  66. Epigenetic dynamics during CD4+ T cells lineage commitment
    Ramón María Alvargonzález Rodríguez, Carlos López‐Larrea, Beatriz Suárez-Álvarez · 2015 · The International Journal of Biochemistry & Cell Biology
  67. PU.1 and BCL11B sequentially cooperate with RUNX1 to anchor mSWI/SNF to poise the T cell effector landscape
    Gamble, Noah, Bradu, Alexandra, Caldwell, Jason A., McKeever, Joshua, Bolonduro, Olubusayo, Ermis, Ebru, Kaiser, Caroline, Kim, YeEun, Parks, Benjamin, Klemm, Sandy et al. · 2024 · Nature Immunology
  68. Transcriptional network dynamics in early T cell development
    Boyoung Shin, Samantha J. Chang, Brendan W. MacNabb, Ellen V. Rothenberg · 2024 · The Journal of Experimental Medicine
  69. Regulators of chromatin state and transcription in CD 4 T ‐cell polarization
    Steven Zvi Josefowicz · 2013 · Immunology
  70. Defining the molecular blueprint that drives CD8+ T cell differentiation in response to infection
    Brendan E. Russ, Alice E. Denton, Lauren A. Hatton, Hayley A. Croom, Matthew R. Olson, S. Turner · 2012 · Front. Immun.
  71. Transcription Factors Directing Th2 Differentiation: Gata-3 Plays a Dominant Role
    Anne O’Garra, Leona Gabryšová · 2016 · The Journal of Immunology
  72. Signatures of DNA target selectivity by ETS transcription factors
    Gregory M.K. Poon, Hye Mi Kim · 2017 · Transcription
  73. Thpok‐independent repression of R unx3 by G ata3 during CD 4+ T ‐cell differentiation in the thymus
    Yumei Xiong, Ehydel Castro, Ryoji Yagi, Jinfang Zhu, Renaud Lesourne, Paul E. Love, Lionel Feigenbaum, Rémy Bosselut · 2013 · European Journal of Immunology
  74. Growth factor independent-1 Maintains Notch1-Dependent Transcriptional Programming of Lymphoid Precursors
    James D. Phelan, Ingrid Saba, Hui Zeng, Christian Kosan, Malynda S. Wynn, H. Andre Olsson, Jennifer Fraszczak, David A. Hildeman, Bruce J. Aronow, Tarik Möröy et al. · 2013 · PLoS Genetics
  75. Alternative Enhancer Usage and Targeted Polycomb Marking Hallmark Promoter Choice during T Cell Differentiation
    Muhammad Ahmad Maqbool, Léo Pioger, Amal Zine El Aabidine, Nezih Karasu, Anne Marie Molitor, Lan T.M. Dao, Guillaume Charbonnier, François Van Laethem, Romain Fenouil, Frédéric Koch et al. · 2020 · Cell Reports
  76. 3D Genome Organization as an Epigenetic Determinant of Transcription Regulation in T Cells
    George Papadogkonas, Dionysios-Alexandros Papamatheakis, Charalampos G. Spilianakis · 2022 · Frontiers in Immunology
  77. Clonal conversion of B lymphoid leukemia reveals cross-lineage transfer of malignant states
    Rajesh Somasundaram, Josefine Åhsberg, Kazuki Okuyama, Jonas Ungerbäck, Henrik Lilljebjörn, Thoas Fioretos, Tobias Strid, Mikael Sigvardsson · 2016 · Genes & Development
  78. Disrupting the Code: Epigenetic Dysregulation of Lymphocyte Function during Infectious Disease and Lymphoma Development
    Andrea Di Pietro, Kim L. Good‐Jacobson · 2018 · The Journal of Immunology
  79. Tumor Immune Microenvironment in Lymphoma: Focus on Epigenetics
    Daniel J. García-Domínguez, Lourdes Hontecillas‐Prieto, Natalia Palazón Carrión, Carlos Jiménez‐Cortegana, Víctor Sánchez‐Margalet, Luis de la Cruz‐Merino · 2022 · Cancers
  80. Active maintenance of CD8+ T cell naivety through regulation of global genome architecture
    Brendan E. Russ, Adele A. Barugahare, Pushkar Dakle, Kirril Tsyganov, Sara Quon, Bingfei Yu, Jasmine Li, Jason K.C. Lee, Moshe Olshansky, Zhaohren He et al. · 2023 · Cell Reports
  81. Changes in gene expression of histone modification enzymes in rat granulosa cells undergoing luteinization during ovulation
    Ryo Maekawa, Lifa Lee, Maki Okada, Hiromi Asada, Masahiro Shinagawa, Isao Tamura, Shun Sato, Hiroshi Tamura, Norihiro Sugino · 2016 · Journal of Ovarian Research
  82. Cellular identity at the single-cell level
    Ahmet F. Coskun, Umut Eser, Saiful Islam · 2016 · Molecular BioSystems
  83. An epigenetic profile of early T‐cell development from multipotent progenitors to committed T‐cell descendants
    M Viganò, Robert Ivánek, Piotr J. Balwierz, Philipp Berninger, Erik van Nimwegen, Klaus Karjalainen, Anton G. Rolink · 2013 · European Journal of Immunology
  84. Stage-specific action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse pro–T cells
    Hiroyuki Hosokawa, Maria Koizumi, Kaori Masuhara, Maile Romero-Wolf, Tomoaki Tanaka, Toshinori Nakayama, Ellen V. Rothenberg · 2021 · The Journal of Experimental Medicine
  85. Coordination of myeloid differentiation with reduced cell cycle progression by PU.1 induction of MicroRNAs targeting cell cycle regulators and lipid anabolism
    Solomon, Lauren A., Podder, Shreya, He, Jessica, Jackson-Chornenki, Nicholas L., Gibson, Kristen, Ziliotto, Rachel G., Rhee, Jess, DeKoter, Rodney P. · 2017 · Molecular and Cellular Biology
  86. Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges
    Ellen V. Rothenberg · 2019 · Journal of Computational Biology
  87. Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment
    Oriana Romano, Clelia Peano, Guidantonio Malagoli Tagliazucchi, Luca Petiti, Valentina Poletti, Fabienne Cocchiarella, Ermanno Rizzi, Marco Severgnini, Alessia Cavazza, Claudia Rossi et al. · 2016 · Scientific Reports
  88. Cancer systems immunology
    Nathan Edward Reticker-Flynn, Edgar G. Engleman · 2020 · eLife
  89. High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologies
    Mohammad Salma, Charlotte Andrieu‐Soler, Virginie Deleuze, Éric Soler · 2023 · Blood Cells Molecules and Diseases
  90. Histone H3K27 Demethylase Negatively Controls the Memory Formation of Antigen-Stimulated CD8+ T Cells
    Takeshi Yamada, Shogo Nabe, Koji Toriyama, Junpei Suzuki, Kazuki Inoue, Yuuki Imai, Atsushi Shiraishi, Katsuto Takenaka, Masaki Yasukawa, Masakatsu Yamashita · 2019 · The Journal of Immunology
  91. 2017 WONOEP appraisal: Studying epilepsy as a network disease using systems biology approaches
    John Matthew Mahoney, James Dominic Mills, Angelika Mühlebner, Jeffrey L. Noebels, Heidrun Potschka, Michele Simonato, Katja Kobow · 2019 · Epilepsia
  92. Genome-wide analysis of histone modifications that underlie the dynamic changes in gene expression during decidualization in human endometrial stromal cells
    Isao Tamura, Amon Shiroshita, Taishi Fujimura, Yumiko Doi‐Tanaka, Yuichiro Shirafuta, Ryo Maekawa, Toshiaki Taketani, Shun Sato, Norihiro Sugino · 2023 · Molecular Human Reproduction
  93. Spatial Interplay between Polycomb and Trithorax Complexes Controls Transcriptional Activity in T Lymphocytes
    Atsushi Onodera, Damon John Tumes, Yukiko Watanabe, Kiyoshi Hirahara, Atsushi Kaneda, Fumihiro Sugiyama, Yutaka Suzuki, Toshinori Nakayama · 2015 · Molecular and Cellular Biology
  94. Dendritic Cell Development: A Choose-Your-Own-Adventure Story
    Amanda J. Moore, Michele Kay Anderson · 2013 · Advances in Hematology
  95. A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways
    Tarmo Äijö, Yun Huang, Henrik Mannerström, Lukas Chávez, Ageliki Tsagaratou, Anjana Rao, Harri J Lähdesmäki · 2016 · Genome biology
  96. Essential role of a ThPOK autoregulatory loop in the maintenance of mature CD4+ T cell identity and function
    Jayati Mookerjee Basu, Bernardo Sgarbi Reis, Suraj Peri, Jikun Zha, Xiang Hua, Lu Ge, Kyle Ferchen, Émmanuelle Nicolas, Philip Czyzewicz, Kathy Qi Cai et al. · 2021 · Nature Immunology
  97. Logic and lineage impacts on functional transcription factor deployment for T-cell fate commitment
    Ellen V. Rothenberg · 2021 · Biophysical Journal
  98. Correlation of Gene Expression and Genome Mutation in Single B-Cells
    Joshua A. Weinstein, Xun Zeng, Yueh‐hsiu Chien, Stephen R. Quake · 2013 · PLoS ONE
  99. T-cell receptor α enhancer is inactivated in αβ T lymphocytes
    Beatriz del Blanco, Úrsula Angulo, Michael S. Krangel, Cristina Hernández-Munaín · 2015 · Proceedings of the National Academy of Sciences
  100. Transcription factors and target genes of pre-TCR signaling
    Cristina López‐Rodríguez, Jose F. Aramburu, Rosa Berga-Bolaños · 2015 · Cellular and Molecular Life Sciences