Long Noncoding RNAs: Cellular Address Codes in Development and Disease

Topological domains in mammalian genomes identified by analysis of chromatin interactions

Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J. S., & Ren, B. (2012) · Nature · doi:10.1038/nature11082 · Cited by 6,829

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

Gupta, R. A., Shah, N., Wang, K., Kim, J., Horlings, H. M., Wong, D. J., Tsai, M.-C., Hung, T., Argani, P., Rinn, J. L., et al. (2010) · Nature · doi:10.1038/nature08975 · Cited by 5,205

Landscape of transcription in human cells

Djebali, S., Davis, C. A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., Tanzer, A., Lagarde, J., Lin, W., Schlesinger, F., et al. (2012) · Nature · doi:10.1038/nature11233 · Cited by 5,187

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expressionPreprint

Derrien, T., Johnson, R., Bussotti, G., Andrea Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A., Knowles, D. G., et al. (2012) · Genome Research · doi:10.1101/gr.132159.111 · Cited by 5,135

Finishing the euchromatic sequence of the human genome

International Human Genome Sequencing Consortium (2004) · Nature · doi:10.1038/nature03001 · Cited by 4,971

Molecular Mechanisms of Long Noncoding RNAs

Wang, K., & Chang, H. Y. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.08.018 · Cited by 4,462

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

Guttman, M., Amit, I., Garber, M., French, C., Lin, M. F., Feldser, D., Huarte, M., Zuk, O., Carey, B. W., Cassady, J. P., et al. (2009) · Nature · doi:10.1038/nature07672 · Cited by 4,098

Genome Regulation by Long Noncoding RNAs

Rinn, J. L., & Chang, H. Y. (2012) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-051410-092902 · Cited by 4,091

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

Hindorff, L. A., Sethupathy, P., Junkins, H. A., Ramos, E. M., Mehta, J. P., Collins, F. S., & Manolio, T. A. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0903103106 · Cited by 4,013

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclassesPreprint

Cabili, M. N., Trapnell, C., Goff, L. A., Koziol, M. J., Tazón‐Vega, B., Regev, A., & Rinn, J. L. (2011) · Genes & Development · doi:10.1101/gad.17446611 · Cited by 3,551

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

Tsai, M.-C., Manor, O., Wan, Y., Mosammaparast, N., Wang, J. K., Lan, F., Shi, Y., Segal, E., & Chang, H. Y. (2010) · Science · doi:10.1126/science.1192002 · Cited by 3,290 · cited 1×

Spatial partitioning of the regulatory landscape of the X-inactivation centre

Nora, E. P., Lajoie, B. R., Schulz, E. G., Giorgetti, L., Okamoto, I., Servant, N., Piolot, T., van Berkum, N. L., Meisig, J., Sedat, J., et al. (2012) · Nature · doi:10.1038/nature11049 · Cited by 2,895

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Khalil, A. M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea Morales, D., Thomas, K., Presser, A., Bernstein, B. E., van Oudenaarden, A., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0904715106 · Cited by 2,872

Widespread transcription at neuronal activity-regulated enhancers

Kim, T.-K., Hemberg, M., Gray, J. M., Costa, A. M., Bear, D. M., Wu, J., Harmin, D. A., Laptewicz, M., Barbara-Haley, K., Kuersten, S., et al. (2010) · Nature · doi:10.1038/nature09033 · Cited by 2,450

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

Ingolia, N. T., Lareau, L. F., & Weissman, J. S. (2011) · Cell · doi:10.1016/j.cell.2011.10.002 · Cited by 2,187

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

Huarte, M., Guttman, M., Feldser, D., Garber, M., Koziol, M. J., Kenzelmann-Broz, D., Khalil, A. M., Zuk, O., Amit, I., Rabani, M., et al. (2010) · Cell · doi:10.1016/j.cell.2010.06.040 · Cited by 2,053

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

Wang, K., Yang, Y. W., Liu, B., Sanyal, A., Corces, M. R., Chen, Y., Lajoie, B. R., Protacio, A., Flynn, R. A., Gupta, R. A., et al. (2011) · Nature · doi:10.1038/nature09819 · Cited by 2,005

Mediator and cohesin connect gene expression and chromatin architecture

Kagey, M. H., Newman, J. J., Bilodeau, S., Zhan, Y., Orlando, D. A., van Berkum, N. L., Ebmeier, C. C., Goossens, J., Rahl, P. B., Levine, S. S., et al. (2010) · Nature · doi:10.1038/nature09380 · Cited by 1,939

lincRNAs act in the circuitry controlling pluripotency and differentiation

Guttman, M., Donaghey, J., Carey, B. W., Garber, M. G., Grenier, J. K., Munson, G., Young, G., Lucas, A. B., Ach, R. A., Bruhn, L., et al. (2011) · Nature · doi:10.1038/nature10398 · Cited by 1,883

The hallmarks of cancer

Gutschner, T., & Diederichs, S. (2012) · RNA Biology · doi:10.4161/rna.20481 · Cited by 1,844

Long Noncoding RNAs with Enhancer-like Function in Human Cells

Ørom, U. A., Derrien, T., Beringer, M., Gumireddy, K., Gardini, A., Bussotti, G., Lai, F., Zytnicki, M., Notredame, C., Huang, Q., et al. (2010) · Cell · doi:10.1016/j.cell.2010.09.001 · Cited by 1,721

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

Clemson, C. M., Hutchinson, J. N., Sara, S. A., Ensminger, A. W., Fox, A. H., Chess, A., & Lawrence, J. B. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.01.026 · Cited by 1,445

RNA Mimics of Green Fluorescent Protein

Paige, J. S., Wu, K., & Jaffrey, S. R. (2011) · Science · doi:10.1126/science.1207339 · Cited by 1,353

lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements

Gong, C., & Maquat, L. E. (2011) · Nature · doi:10.1038/nature09701 · Cited by 1,294

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

Chu, C., Qu, K., Zhong, F. L., Artandi, S. E., & Chang, H. Y. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.08.027 · Cited by 1,293

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

Ulitsky, I., Shkumatava, A., Jan, C. H., Sive, H. L., & Bartel, D. P. (2011) · Cell · doi:10.1016/j.cell.2011.11.055 · Cited by 1,197

Chromosome TerritoriesPreprint

Cremer, T. J., & Cremer, M. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a003889 · Cited by 1,195

Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

Pandey, R. R., Mondal, T., Mohammad, F., Enroth, S., Redrup, L., Komorowski, J., Nagano, T., Mancini‐DiNardo, D., & Kanduri, C. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.08.022 · Cited by 1,192

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

Hung, T., Wang, Y., Lin, M. F., Koegel, A. K., Kotake, Y., Grant, G. D., Horlings, H. M., Shah, N., Umbricht, C. B., Wang, P., et al. (2011) · Nature Genetics · doi:10.1038/ng.848 · Cited by 1,165

Beyond the Sequence: Cellular Organization of Genome Function

Misteli, T. (2007) · Cell · doi:10.1016/j.cell.2007.01.028 · Cited by 1,140

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

Carrieri, C., Cimatti, L., Biagioli, M., Beugnet, A., Zucchelli, S., Fedele, S., Pesce, E., Ferrer, I., Collavin, L., Santoro, C., et al. (2012) · Nature · doi:10.1038/nature11508 · Cited by 1,032

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

Zhao, J. C., Ohsumi, T. K., Kung, J. T., Ogawa, Y., Grau, D., Sarma, K., Song, J. J., Kingston, R. E., Borowsky, M. L., & Lee, J. T. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.12.011 · Cited by 1,008

Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

Wang, X., Arai, S., Song, X., Reichart, D. R., Du, K., Pascual, G., Tempst, P., Rosenfeld, M. G., Glass, C. K., & Kurokawa, R. (2008) · Nature · doi:10.1038/nature06992 · Cited by 1,007

LincRNA-p21 Suppresses Target mRNA Translation

Yoon, J., Abdelmohsen, K., Srikantan, S., Yang, X., Martindale, J. L., De, S., Huarte, M., Zhan, M., Becker, K. G., & Gorospe, M. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.06.027 · Cited by 989

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

De Santa, F., Barozzi, I., Mietton, F., Ghisletti, S., Polletti, S., Tusi, B. K., Muller, H., Ragoussis, J., Wei, C.-L., & Natoli, G. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000384 · Cited by 934

The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

Nagano, T., Mitchell, J. A., Sanz, L. A., Pauler, F. M., Ferguson‐Smith, A. C., Feil, R., & Fraser, P. (2008) · Science · doi:10.1126/science.1163802 · Cited by 932

Control of somatic tissue differentiation by the long non-coding RNA TINCR

Kretz, M., Siprashvili, Z., Chu, C., Webster, D., Zehnder, A., Qu, K., Lee, C. S., Flockhart, R., Groff, A., Chow, J. M., et al. (2012) · Nature · doi:10.1038/nature11661 · Cited by 920

Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution

Solovei, I. V., Kreysing, M., Lanctôt, C., Kösem, S., Peichl, L., Cremer, T. J., Guck, J. R., & Joffe, B. I. (2009) · Cell · doi:10.1016/j.cell.2009.01.052 · Cited by 820

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesisPreprint

Pauli, A., Valen, E., Lin, M. F., Garber, M. G., Vastenhouw, N. L., Levin, J. Z., Fan, L., Sandelin, A., Rinn, J. L., Regev, A., et al. (2011) · Genome Research · doi:10.1101/gr.133009.111 · Cited by 793

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAsPreprint

Ponjavic, J., Ponting, C. P., & Lunter, G. A. (2007) · Genome Research · doi:10.1101/gr.6036807 · Cited by 731

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

Martianov, I., Ramadass, A., Barros, A. S., Chow, N., & Akoulitchev, A. V. (2007) · Nature · doi:10.1038/nature05519 · Cited by 728

Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation

Modarresi, F., Faghihi, M. A., López-Toledano, M. A., Fatemi, R. P., Magistri, M., Brothers, S. P., van der Brug, M. P., & Wahlestedt, C. (2012) · Nature Biotechnology · doi:10.1038/nbt.2158 · Cited by 683

Altered Nuclear Retention of mRNAs Containing Inverted Repeats in Human Embryonic Stem Cells: Functional Role of a Nuclear Noncoding RNA

Chen, L., & Carmichael, G. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.06.027 · Cited by 677

X-Inactivation, Imprinting, and Long Noncoding RNAs in Health and Disease

Lee, J. T., & Bartolomei, M. S. (2013) · Cell · doi:10.1016/j.cell.2013.02.016 · Cited by 674

MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspecklesPreprint

Sunwoo, H., Dinger, M. E., Wilusz, J. E., Amaral, P., Mattick, J. S., & Spector, D. L. (2008) · Genome Research · doi:10.1101/gr.087775.108 · Cited by 672

Organization of Intracellular Reactions with Rationally Designed RNA Assemblies

Delebecque, C. J., Lindner, A. B., Silver, P. A., & Aldaye, F. A. (2011) · Science · doi:10.1126/science.1206938 · Cited by 634

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

Yang, L., Lin, C., Liu, W., Zhang, J., Ohgi, K. A., Grinstein, J. D., Dorrestein, P. C., & Rosenfeld, M. G. (2011) · Cell · doi:10.1016/j.cell.2011.08.054 · Cited by 612

MENε/β noncoding RNAs are essential for structural integrity of nuclear paraspeckles

Sasaki, Y., Ideue, T., Sano, M., Mitsuyama, T., & Hirose, T. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0807899106 · Cited by 604

The lncRNA Malat1 Is Dispensable for Mouse Development but Its Transcription Plays a cis-Regulatory Role in the Adult

Zhang, B., Arun, G., Mao, Y. S., Lazar, Z., Hung, G., Bhattacharjee, G., Xiao, X., Booth, C. J., Wu, J., Zhang, C., et al. (2012) · Cell Reports · doi:10.1016/j.celrep.2012.06.003 · Cited by 598

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

Martens, J. A., Laprade, L., & Winston, F. (2004) · Nature · doi:10.1038/nature02538 · Cited by 594

RYBP-PRC1 Complexes Mediate H2A Ubiquitylation at Polycomb Target Sites Independently of PRC2 and H3K27me3

Tavares, L., Dimitrova, E., Oxley, D., Webster, J. A., Poot, R. A., Demmers, J., Bezstarosti, K., Taylor, S., Ura, H., Koide, H., et al. (2012) · Cell · doi:10.1016/j.cell.2011.12.029 · Cited by 583

Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Latos, P. A., Pauler, F. M., Koerner, M. V., Senergin, B. H., Hudson, Q. J., Stocsits, R. R., Allhoff, W., Stricker, S. H., Klement, R. M., Warczok, K. E., et al. (2012) · Science · doi:10.1126/science.1228110 · Cited by 542

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genomePreprint

Ravasi, T., Suzuki, H., Pang, K. C., Katayama, S., Furuno, M., Okunishi, R., Fukuda, S., Ru, K., Frith, M. C., Gongora, M., et al. (2005) · Genome Research · doi:10.1101/gr.4200206 · Cited by 522

Targeting nuclear RNA for in vivo correction of myotonic dystrophy

Wheeler, T. M., Leger, A. J., Pandey, S., MacLeod, A. R., Nakamori, M., Cheng, S. H., Wentworth, B. M., Bennett, C. F., & Thornton, C. A. (2012) · Nature · doi:10.1038/nature11362 · Cited by 521

The Long Noncoding RNA, Jpx, Is a Molecular Switch for X Chromosome Inactivation

Tian, D., Sun, S., & Lee, J. T. (2010) · Cell · doi:10.1016/j.cell.2010.09.049 · Cited by 516

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genesPreprint

Schmitz, K., Mayer, C., Postepska‐Igielska, A., & Grummt, I. (2010) · Genes & Development · doi:10.1101/gad.590910 · Cited by 506

A triple helix stabilizes the 3′ ends of long noncoding RNAs that lack poly(A) tailsPreprint

Wilusz, J. E., JnBaptiste, C. K., Lu, L. Y., Kuhn, C., Joshua‐Tor, L., & Sharp, P. A. (2012) · Genes & Development · doi:10.1101/gad.204438.112 · Cited by 487

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAsPreprint

Tilgner, H., Knowles, D. G., Johnson, R., Davis, C., Chakrabortty, S. K., Djebali, S., Curado, J., Snyder, M. P., Gingeras, T., & Guigó, R. (2012) · Genome Research · doi:10.1101/gr.134445.111 · Cited by 486

Long Noncoding RNAs with snoRNA Ends

Yin, Q.-F., Yang, L. C., Zhang, Y., Xiang, J., Wu, Y., Carmichael, G., & Chen, L. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.07.033 · Cited by 464

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

Mao, Y. S., Sunwoo, H., Zhang, B., & Spector, D. L. (2010) · Nature Cell Biology · doi:10.1038/ncb2140 · Cited by 455

The genomic binding sites of a noncoding RNA

Simon, M. D., Wang, C. I., Kharchenko, P. V., West, J. A., Chapman, B., Alekseyenko, A. A., Borowsky, M. L., Kuroda, M. I., & Kingston, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1113536108 · Cited by 454

A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy

Cabianca, D. S., Casà, V., Bodega, B., Xynos, A., Ginelli, E., Tanaka, Y., & Gabellini, D. (2012) · Cell · doi:10.1016/j.cell.2012.03.035 · Cited by 402

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

Bond, A. M., VanGompel, M. J. W., Sametsky, E. A., Clark, M. F., Savage, J. C., Disterhoft, J. F., & Kohtz, J. D. (2009) · Nature Neuroscience · doi:10.1038/nn.2371 · Cited by 399

Long noncoding RNAs are rarely translated in two human cell linesPreprint

Bánfai, B., Jia, H., Khatun, J., Wood, E., Risk, B., Gundling, W. E., Kundaje, A., Gunawardena, H. P., Yu, Y., Xie, L., et al. (2012) · Genome Research · doi:10.1101/gr.134767.111 · Cited by 399

Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development

Eissmann, M. F., Gutschner, T., Hämmerle, M., Günther, S., Caudron‐Herger, M., Groß, M., Schirmacher, P., Rippe, K., Braun, T. W., Zörnig, M., et al. (2012) · RNA Biology · doi:10.4161/rna.21089 · Cited by 395

The Dynamic Architecture of Hox Gene Clusters

Noordermeer, D., Leleu, M., Splinter, E., Rougemont, J., de Laat, W. L., & Duboule, D. (2011) · Science · doi:10.1126/science.1207194 · Cited by 391

Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenomePreprint

Lee, J. T. (2009) · Genes & Development · doi:10.1101/gad.1811209 · Cited by 357

Malat1 is not an essential component of nuclear speckles in mice

Nakagawa, S., Ip, J. Y. Y., Shioi, G., Tripathi, V., Zong, X., Hirose, T., & Prasanth, K. V. (2012) · RNA · doi:10.1261/rna.033217.112 · Cited by 350

Nucleation of nuclear bodies by RNA

Shevtsov, S. P., & Dundr, M. (2011) · Nature Cell Biology · doi:10.1038/ncb2157 · Cited by 343

Intergenic Transcripts Regulate the Epigenetic State of rRNA Genes

Mayer, C., Schmitz, K., Li, J., Grummt, I., & Santoro, R. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.03.028 · Cited by 337

Intergenic transcription and transinduction of the human β-globin locusPreprint

Ashe, H. L., Monks, J., Wijgerde, M., Fraser, P., & Proudfoot, N. J. (1997) · Genes & Development · doi:10.1101/gad.11.19.2494 · Cited by 332

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNAPreprint

Splinter, E., de Wit, E., Nora, E. P., Klous, P., van de Werken, H. J. G., Zhu, Y. K., Kaaij, L. J. T., van IJcken, W. F. J., Gribnau, J. H., Heard, É., et al. (2011) · Genes & Development · doi:10.1101/gad.633311 · Cited by 323

Selective elimination of messenger RNA prevents an incidence of untimely meiosis

Harigaya, Y., Tanaka, H., Yamanaka, S., Tanaka, K., Watanabe, Y., Tsutsumi, C., Chikashige, Y., Hiraoka, Y., Yamashita, A., & Yamamoto, M. P. (2006) · Nature · doi:10.1038/nature04881 · Cited by 313

Formation of triple-helical structures by the 3′-end sequences of MALAT1 and MENβ noncoding RNAs

Brown, J. A., Valenstein, M. L., Yario, T. A., Tycowski, K. T., & STEITZ, J. A. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1217338109 · Cited by 311

Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice

Nakagawa, S., Naganuma, T., Shioi, G., & Hirose, T. (2011) · The Journal of Cell Biology · doi:10.1083/jcb.201011110 · Cited by 309

A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster

Houseley, J. M., Rubbi, L., Grunstein, M. R., Tollervey, D. W., & Vogelauer, M. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.09.027 · Cited by 306

DD3 RNA Analysis in Urine ? A New Perspective for Detecting Prostate Cancer

Tinzl, M., Marberger, M., Horvath, S., & Chypre, C. (2004) · European Urology · doi:10.1016/j.eururo.2004.06.004 · Cited by 282

Biogenesis of Nuclear BodiesPreprint

Dundr, M., & Misteli, T. (2010) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a000711 · Cited by 274

Immobilization of Proteins in the Nucleolus by Ribosomal Intergenic Spacer Noncoding RNA

Audas, T. E., Jacob, M. D., & Lee, S. B. (2012) · Molecular Cell · doi:10.1016/j.molcel.2011.12.012 · Cited by 263

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness

Marques, A. C., & Ponting, C. P. (2009) · Genome biology · doi:10.1186/gb-2009-10-11-r124 · Cited by 261

Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast

van Werven, F. J., Neuert, G., Hendrick, N., Lardenois, A., Buratowski, S., van Oudenaarden, A., Primig, M., & Amon, A. (2012) · Cell · doi:10.1016/j.cell.2012.06.049 · Cited by 257

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

Brunner, A. L., Beck, A. H., Edris, B., Sweeney, R. T., Zhu, S., Li, R., Montgomery, K. D., Varma, S., Gilks, T., Guo, X., et al. (2012) · Genome biology · doi:10.1186/gb-2012-13-8-r75 · Cited by 240

Intergenic transcription through a Polycomb group response element counteracts silencingPreprint

Schmitt, S., Prestel, M., & Paro, R. (2005) · Genes & Development · doi:10.1101/gad.326205 · Cited by 230

Long noncoding RNAs in C. elegansPreprint

Nam, J., & Bartel, D. P. (2012) · Genome Research · doi:10.1101/gr.140475.112 · Cited by 217

RNA Elimination Machinery Targeting Meiotic mRNAs Promotes Facultative Heterochromatin Formation

Zofall, M., Yamanaka, S., Reyes‐Turcu, F. E., Zhang, K., Rubin, C., & Grewal, S. I. S. (2011) · Science · doi:10.1126/science.1211651 · Cited by 213

Genome-wide Measurement of RNA Folding Energies

Wan, Y., Qu, K., Ouyang, Z., Kertesz, M., Li, J., Tibshirani, R. J., Makino, D. L., Nutter, R. C., Segal, E., & Chang, H. Y. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.08.008 · Cited by 211

Set3 HDAC Mediates Effects of Overlapping Noncoding Transcription on Gene Induction Kinetics

Kim, T. S., Xu, Z., Clauder‐Münster, S., Steinmetz, L. M., & Buratowski, S. (2012) · Cell · doi:10.1016/j.cell.2012.08.016 · Cited by 208

Intronic RNAs mediate EZH2 regulation of epigenetic targets

Guil, S., Soler, M., Portela, A., Carrere-Molina, J., Fonalleras, E., Gómez, A., Villanueva, A., & Esteller, M. (2012) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2315 · Cited by 183

uPM3, a new molecular urine test for the detection of prostate cancer

Fradet, Y., Fred Saad, C., Aprikian, A. G., Dessureault, J., ELHILALI, M. M., Trudel, C., Mâsse, B. R., Piché, L., & Chypre, C. (2004) · Urology · doi:10.1016/j.urology.2004.03.052 · Cited by 182

Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix

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Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorderPreprint

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