H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency

Cited by (551)

Items 101–200 of 551

  1. Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation
    Satoyo Oya, Mayumi M. Takahashi, Kazuya Takashima, Tetsuji Kakutani, Soichi Inagaki · 2022 · Nature Communications
  2. Aberrant DNA and histone methylation during zygotic genome activation in goat cloned embryos
    Mingtian Deng, Zifei Liu, Baobao Chen, Yongjie Wan, Hua Yang, Yanli Zhang, Yu Cai, Jian‐Guo Zhou, Feng Wang · 2020 · Theriogenology
  3. SET/MLL family proteins in hematopoiesis and leukemia
    Weiwei Yang, Patricia Ernst · 2016 · International Journal of Hematology
  4. RNF40 regulates gene expression in an epigenetic context-dependent manner
    Wanhua Xie, Sankari Nagarajan, Simon J. Baumgart, Robyn Laura Kosinsky, Zeynab Najafova, Vijayalakshmi Kari, Magali Hennion, Daniela Indenbirken, Stefan Bonn, Adam T. Grundhoff et al. · 2017 · Genome biology
  5. H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells
    Runsheng He, Benjamin L. Kidder · 2017 · Nucleic Acids Research
  6. Epigenetic priming by Dppa2 and 4 in pluripotency facilitates multi-lineage commitment
    Mélanie A. Eckersley-Maslin, Aled Parry, Marloes Blotenburg, Christel Krueger, Yoko Ito, Valar Nila Roamio Franklin, Masashi Narita, Clive S. D’Santos, Wolf Reik · 2020 · Nature Structural & Molecular Biology
  7. Cross-talk between SOX2 and TGFβ Signaling Regulates EGFR–TKI Tolerance and Lung Cancer Dissemination
    Ming-Han Kuo, An-Chun Lee, Shih-Hsin Hsiao, Sey‐En Lin, Yu-Fan Chiu, Li-Hao Yang, Chia-Cherng Yu, Shih‐Hwa Chiou, Hsien‐Neng Huang, Jen‐Chung Ko et al. · 2020 · Cancer Research
  8. A Drosophila Model of Intellectual Disability Caused by Mutations in the Histone Demethylase KDM5
    Sumaira Zamurrad, Hayden A. M. Hatch, Coralie Drelon, Helen M. Belálcazar, Julie Secombe · 2018 · Cell Reports
  9. Using 3D epigenomic maps of primary olfactory neuronal cells from living individuals to understand gene regulation
    S. Rhie, S. Schreiner, Heather Witt, Chris Armoskus, Fides D. Lay, A. Camarena, Valeria N. Spitsyna, Yu Guo, Benjamin P. Berman, O. Evgrafov et al. · 2018 · Science Advances
  10. Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers
    Aziz Khan, Anthony Mathelier, Xuegong Zhang · 2018 · Epigenetics
  11. Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity
    Woo Jun Shim, Enakshi Sinniah, Jun Xu, Burcu Vitrinel, Michael Alexanian, Gaia Andreoletti, Sophie Shen, Yuliangzi Sun, Brad Balderson, Carles A. Boix et al. · 2020 · Cell Systems
  12. Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
    Asa Thibodeau, Eladio J. Márquez, Dong‐Guk Shin, Paola Vera‐Licona, Duygu Ucar · 2017 · Scientific Reports
  13. Why are so many MLL lysine methyltransferases required for normal mammalian development?
    Nicholas T. Crump, Thomas A. Milne · 2019 · Cellular and Molecular Life Sciences
  14. WDR5 supports colon cancer cells by promoting methylation of H3K4 and suppressing DNA damage
    Beth K. Neilsen, Binita Chakraborty, Jamie L. McCall, Danielle E. Frodyma, Richard L. Sleightholm, Kurt W. Fisher, Robert E. Lewis · 2018 · BMC Cancer
  15. Multi-scale chromatin state annotation using a hierarchical hidden Markov model
    Eugenio Marco, Wouter R. A. Meuleman, Jialiang Huang, Kimberly Glass, Luca Pinello, Jianrong Wang, M Kellis, Guo‐Cheng Yuan · 2017 · Nature Communications
  16. Epigenetic landscape reveals MECOM as an endothelial lineage regulator
    Jie Lv, Shu Meng, Qilin Gu, Rongbin Zheng, Xinlei Gao, Jun‐Dae Kim, Min Chen, Bo Xia, Yi-Han Zuo, Sen Lin Zhu et al. · 2023 · Nature Communications
  17. Compensatory RNA polymerase 2 loading determines the efficacy and transcriptional selectivity of JQ1 in Myc-driven tumors
    Elisa Donato, Ottavio Croci, Arianna Sabò, Heiko Müller, Marco J. Morelli, Mattia Pelizzola, Stefano Campaner · 2016 · Leukemia
  18. CRX directs photoreceptor differentiation by accelerating chromatin remodeling at specific target sites
    Philip A. Ruzycki, Xiaodong Zhang, Shiming Chen · 2018 · Epigenetics & Chromatin
  19. HPV integration generates a cellular super-enhancer which functions as ecDNA to regulate genome-wide transcription
    R. Tian, Zhe-Ying Huang, Lifang Li, Jingping Yuan, Qinghua Zhang, Lirong Meng, Bin Lang, Yongfeng Hong, Chaoyue Zhong, Xun Tian et al. · 2023 · Nucleic Acids Research
  20. Genome-wide Analysis of RARβ Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington’s Disease and Other Neurodegenerative Disorders
    Anna Niewiadomska-Cimicka, Agnieszka Krzyżosiak, Tao Ye, Anna Podlesny‐Drabiniok, Doulaye Dembélé, Pascal Dollé, Wojciech Krężel · 2016 · Molecular Neurobiology
  21. Low-Cell-Number Epigenome Profiling Aids the Study of Lens Aging and Hematopoiesis
    Xiaobin Zheng, Sibiao Yue, Haiyang Chen, Blake Weber, Junling Jia, Yixian Zheng · 2015 · Cell Reports
  22. Epigenetic modification in chromatin machinery and its deregulation in pediatric brain tumors: Insight into epigenetic therapies
    Eléonore Maury, Rintaro Hashizume · 2017 · Epigenetics
  23. Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver
    Dubois, Vanessa, Gheeraert, Céline, Vankrunkelsven, Wouter, Dubois‐Chevalier, Julie, Dehondt, Hélène, Bobowski‐Gerard, Marie, Vinod, Manjula, Zummo, Francesco Paolo, Güiza, Fabian, Ploton, Maheul et al. · 2020 · Molecular Systems Biology
  24. LncRNA lncLy6C induced by microbiota metabolite butyrate promotes differentiation of Ly6Chigh to Ly6Cint/neg macrophages through lncLy6C/C/EBPβ/Nr4A1 axis
    Gao, Yunhuan, Zhou, Jiang, Qi, Houbao, Wei, Jianmei, Yang, Yazheng, Yue, Jianmei, Liu, Xinqi, Zhang, Yuan, Yang, Rongcun · 2020 · Cell Discovery
  25. Human-Specific Genes, Cortical Progenitor Cells, and Microcephaly
    Michael Heide, Wieland Β. Huttner · 2021 · Cells
  26. The transcriptional coactivator RUVBL2 regulates Pol II clustering with diverse transcription factors
    Hui Wang, Boyuan Li, Linyu Zuo, Bo Wang, Yan Yan, Kai Tian, Rong Zhou, Chenlu Wang, Xizi Chen, Yongpeng Jiang et al. · 2022 · Nature Communications
  27. Transcription-coupled genetic instability marks acute lymphoblastic leukemia structural variation hotspots
    Merja Heinäniemi, Tapio Vuorenmaa, Susanna Teppo, Minna Unelma Kaikkonen, Maria Bouvy‐Liivrand, Juha Mehtonen, Henri Niskanen, Vasilios Zachariadis, Saara Laukkanen, Thomas Liuksiala et al. · 2016 · eLife
  28. SLY regulates genes involved in chromatin remodeling and interacts with TBL1XR1 during sperm differentiation
    C. Moretti, Maria‐Elisabetta Serrentino, Côme Ialy‐Radio, Marion Delessard, Tatiana Soboleva, Frédéric Torès, Marjorie Leduc, Patrick Nitschké, Joël R. Drevet, David John Tremethick et al. · 2017 · Cell Death and Differentiation
  29. Cross Talk between One-Carbon Metabolism, Eph Signaling, and Histone Methylation Promotes Neural Stem Cell Differentiation
    Mohamad-Ali Fawal, Thomas Jungas, Anthony Kischel, Christophe Audouard, Jason S. Iacovoni, Alice Davy · 2018 · Cell Reports
  30. Unique patterns of trimethylation of histone H3 lysine 4 are prone to changes during aging in Caenorhabditis elegans somatic cells
    Mintie Pu, Minghui Wang, Wenke Wang, Velayudhan Satheeja Santhi, Siu Sylvia Lee · 2018 · PLoS Genetics
  31. Machine learning uncovers cell identity regulator by histone code
    Bo Xia, Dongyu Zhao, Guangyu Wang, Min Zhang, Jie Lv, Alin S. Tomoiaga, Yanqiang Li, Xin Wang, Shu Meng, John P. Cooke et al. · 2020 · Nature Communications
  32. High-resolution analysis of Merkel Cell Polyomavirus in Merkel Cell Carcinoma reveals distinct integration patterns and suggests NHEJ and MMBIR as underlying mechanisms
    Manja Czech‐Sioli, Thomas Günther, Marlin Therre, Michael Spohn, Daniela Indenbirken, Juliane Theiß, Sabine Riethdorf, Minyue Qi, Malik Alawi, Corinna Wülbeck et al. · 2020 · PLoS Pathogens
  33. Low RNA stability signifies increased post-transcriptional regulation of cell identity genes
    Yanqiang Li, Yi Yang, Jie Lv, Xinlei Gao, Yang Yu, Sahana Suresh Babu, Ivone Bruno, Dongyu Zhao, Bo Xia, Weiqun Peng et al. · 2023 · Nucleic Acids Research
  34. Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis
    Nathan J. Palpant, Yuliang Wang, Brandon Hadland, Rebecca J. Zaunbrecher, Meredith A. Redd, Daniel C. Jones, Lil Pabon, Rajan Jain, Jonathan A. Epstein, Walter L. Ruzzo et al. · 2017 · Cell Reports
  35. Evolutionary expansion of DNA hypomethylation in the mammalian germline genome
    Jianghan Qu, Emily C. Hodges, Antoine Molaro, Pascal Gagneux, Matthew D. Dean, Gregory J. Hannon, Andrew D. Smith · 2017 · Genome Research
  36. The Open Chromatin Landscape of Non–Small Cell Lung Carcinoma
    Zhoufeng Wang, Kailing Tu, Xia Lin, Kai Luo, Wenxin Luo, Jie Tang, Keying Lu, Xinlei Hu, Yijing He, Wenliang Qiao et al. · 2019 · Cancer Research
  37. Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia
    Gretchen Johnston, Haley Elizabeth Ramsey, Qi Liu, Jing Wang, Kristy R. Stengel, Shilpa Sampathi, Pankaj Acharya, Maria Pia Arrate, Matthew C. Stubbs, Timothy C. Burn et al. · 2020 · Gene
  38. Epigenetic Regulation of Angiogenesis by JARID1B-Induced Repression of HOXA5
    Christian Fork, Lunda Gu, Juliane Hitzel, Ivana Josipovic, Jiong Hu, Michael Sze Ka Wong, Yuliya Ponomareva, Mareike Albert, Sandra U. Schmitz, Shizuka Uchida et al. · 2015 · Arteriosclerosis Thrombosis and Vascular Biology
  39. Distinct functions of histone H3, lysine 4 methyltransferases in normal and malignant hematopoiesis
    Weiwei Yang, Patricia Ernst · 2017 · Current Opinion in Hematology
  40. Broad domains of histone 3 lysine 4 trimethylation are associated with transcriptional activation in CA1 neurons of the hippocampus during memory formation
    Bridget E. Collins, J. David Sweatt, Celeste B. Greer · 2019 · Neurobiology of Learning and Memory
  41. There is another: H3K27me3-mediated genomic imprinting
    Maximilian W.D. Raas, Dick W. Zijlmans, Michiel Vermeulen, Hendrik Marks · 2021 · Trends in Genetics
  42. Subcellular one carbon metabolism in cancer, aging and epigenetics
    Tiziano Bernasocchi, Raúl Mostoslavsky · 2024 · Frontiers in Epigenetics and Epigenomics
  43. Distinct epigenomic patterns are associated with haploinsufficiency and predict risk genes of developmental disorders
    Xinwei Han, Siying Chen, Elise D. Flynn, Shuang Wu, Dana Wintner, Yufeng Shen · 2018 · Nature Communications
  44. Towards a Quantitative Understanding of Cell Identity
    Zi Ye, Casim A. Sarkar · 2018 · Trends in Cell Biology
  45. Epigenetic dysregulation in cardiovascular aging and disease
    Allison B. Herman, James R. Occean, Payel Sen · 2021 · The Journal of Cardiovascular Aging
  46. Maternal Exercise-Induced SOD3 Reverses the Deleterious Effects of Maternal High-Fat Diet on Offspring Metabolism Through Stabilization of H3K4me3 and Protection Against WDR82 Carbonylation
    Joji Kusuyama, Nathan Makarewicz, Brent G. Albertson, Ana Bárbara Alves-Wagner, Royce H. Conlin, Noah B. Prince, Christiano R. R. Alves, Krithika Ramachandran, Chisayo Kozuka, Xiudong Yang et al. · 2022 · Diabetes
  47. BMI1 promotes osteosarcoma proliferation and metastasis by repressing the transcription of SIK1
    Qiang Wang, Yinghui Wu, Meng Lin, Gaigai Wang, Jinyan Liu, Min Xie, Bo Jian Zheng, Cong Shen, Jun Shen · 2022 · Cancer Cell International
  48. Critical role of SOX2–IGF2 signaling in aggressiveness of bladder cancer
    Yu-Fan Chiu, Chia‐Chang Wu, Ming-Han Kuo, Chia‐Cheng Miao, Ming‐Yi Zheng, Pei‐Yu Chen, Sheng-Chieh Lin, Junn-Liang Chang, Yuan‐Hung Wang, Yu‐Ting Chou · 2020 · Scientific Reports
  49. Targeting netrin‐3 in small cell lung cancer and neuroblastoma
    Shan Jiang, Mathieu Richaud, Pauline Vieugué, Nicolas Rama, Jean‐Guy Delcros, Maha Siouda, Mitsuaki Sanada, Anna Rita Redavid, Benjamin Ducarouge, Maëva Hervieu et al. · 2021 · EMBO Molecular Medicine
  50. The Transcriptional Repressor Polycomb Group Factor 6, PCGF6, Negatively Regulates Dendritic Cell Activation and Promotes Quiescence
    Giselle M. Boukhaled, Brendan Cordeiro, Geneviève Deblois, Vassil Dimitrov, Swneke Donovan Bailey, Thomas Holowka, Anisa Domi, Hannah Guak, Huai-Hsuan Clare Chiu, Bart Everts et al. · 2016 · Cell Reports
  51. Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains
    Ying-Tao Zhao, Deborah Y. Kwon, Brian S. Johnson, Maria Fasolino, Janine M. Lamonica, Yoon Jung Kim, Boxuan Simen Zhao, Chuan He, Golnaz Vahedi, Tae Hoon Kim et al. · 2018 · Genome Research
  52. Pre-differentiation GenX exposure induced neurotoxicity in human dopaminergic-like neurons
    Shichen Wu, Junkai Xie, Han Zhao, Oscar Fernando Sánchez, Xihui Zhao, Jennifer L. Freeman, Chongli Yuan · 2023 · Chemosphere
  53. The PRC2-associated factor C17orf96 is a novel CpG island regulator in mouse ES cells
    Robert Liefke, Yang Shi · 2015 · Cell Discovery
  54. Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs
    Nepal, Chirag, Coolen, Marion, Hadzhiev, Yavor, Cussigh, Delphine, Mydel, Piotr, Steen, Vidar M., Carninci, Piero, Andersen, Jesper B., Bally-Cuif, Laure, Müller, Ferenc et al. · 2016 · Nucleic Acids Research
  55. Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts
    Nathan T Lawlor, Ahrim Youn, Romy Kursawe, Duygu Ucar, Michael L. Stitzel · 2017 · Scientific Reports
  56. Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data
    Wen Jun Xie, Bin Zhang · 2019 · Biophysical Journal
  57. The histone demethylase KDM5 controls developmental timing in Drosophila by promoting prothoracic gland endocycles
    Coralie Drelon, Michael F. Rogers, Helen M. Belálcazar, Julie Secombe · 2019 · Development
  58. Empowering Muscle Stem Cells for the Treatment of Duchenne Muscular Dystrophy
    Romina L. Filippelli, Natasha C. Chang · 2021 · Cells Tissues Organs
  59. Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
    Jin Li, Yan Li, Wei Li, Huai-Bing Luo, Yan-Ping Xi, Shi-Hua Dong, Ming Gao, Peng Xu, Bao-Long Zhang, Ying Liang et al. · 2019 · Genome Research
  60. Epigenetic and molecular coordination between HDAC2 and SMAD3-SKI regulates essential brain tumour stem cell characteristics
    Ravinder Kaur Bahia, Xiaoguang Hao, Rozina Hassam, Orsolya Cseh, Danielle Bozek, Hema Artee Luchman, Samuel Weiss · 2023 · Nature Communications
  61. All-or-(N)One – an epistemological characterization of the human tumorigenic neuronal paralogous FAM72 gene loci
    Arne Kutzner, Subrata Pramanik, Pok‐Son Kim, Klaus Heese · 2015 · Genomics
  62. The aging mouse lens transcriptome
    Adam P. Faranda, Mahbubul H. Shihan, Yan Wang, Melinda K. Duncan · 2021 · Experimental Eye Research
  63. Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7
    Andrew J. Kueh, Maria Bergamasco, Anna Quaglieri, Belinda Phipson, Connie S.N. Li Wai Suen, Ingrid M. Lönnstedt, Yifang Hu, Zhiping Feng, Chris Woodruff, Rose E. May et al. · 2023 · Cell Reports
  64. Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells
    Yingying Han, Xiao Chu, Haopeng Yu, Yingke Ma, Xiu‐Jie Wang, Wenfeng Qian, Yuling Jiao · 2017 · 中国科学通报:英文版
  65. Histone bivalency regulates the timing of cerebellar granule cell development
    Kärt Mätlik, Eve‐Ellen Govek, Matthew Robert Paul, C. David Allis, Mary E. Hatten · 2023 · Genes & Development
  66. Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem
    Steven G. Hussey, Mattheüs T. Loots, Karen van der Merwe, Eshchar Mizrachi, Alexander Andrew Myburg · 2017 · Scientific Reports
  67. Unique Patterns of H3K4me3 and H3K27me3 in 2-Cell-like Embryonic Stem Cells
    Yanping Zhang, Yixin Huang, Yu Dong, Xiaoyu Liu, Xiaochen Kou, Yanhong Zhao, Anqi Zhao, Jiatong Sun, Zhongqu Su, Zongyu Li et al. · 2021 · Stem Cell Reports
  68. Oxidative stress sensing and response in neural stem cell fate
    Inah Hwang, Deanna Tang, Jihye Paik · 2021 · Free Radical Biology and Medicine
  69. Histone Modifications in Ageing and Lifespan Regulation
    Monika Maleszewska, Julia S. P. Mawer, Peter Tessarz · 2016 · Current Molecular Biology Reports
  70. Stable H3K4me3 is associated with transcription initiation during early embryo development
    Xin Huang, Xudong Gao, Wanying Li, Shuai Jiang, Ruijiang Li, Hao Hong, Chenghui Zhao, Ping‐Kun Zhou, Hebing Chen, Xiaochen Bo et al. · 2019 · Bioinformatics
  71. Induction of α cell–restricted Gc in dedifferentiating β cells contributes to stress-induced β cell dysfunction
    Taiyi Kuo, Manashree Damle, Bryan J. González, Dieter M. Egli, Mitchell A. Lazar, Domenico Accili · 2019 · JCI Insight
  72. H3K4 Methylation in Aging and Metabolism
    Chia-Ling Hsu, Yi‐Chen Lo, Cheng-Fu Kao · 2021 · Epigenomes
  73. Chromatin states shaped by an epigenetic code confer regenerative potential to the mouse liver
    Chi Zhang, Filippo Macchi, Elena Magnani, Kirsten C. Sadler · 2021 · Nature Communications
  74. BMI1 promotes spermatogonial stem cell maintenance by epigenetically repressing Wnt10b/β-catenin signaling
    Jun Jian Yu, Cong Shen, Meng Lin, Xia Chen, Xiuliang Dai, Zhiran Li, Yunhao Wu, Yangbo Fu, Jinxing Lv, Xiaoyan Huang et al. · 2022 · International Journal of Biological Sciences
  75. Aberrant H3K4me3 modification of epiblast genes of extraembryonic tissue causes placental defects and implantation failure in mouse IVF embryos
    Dandan Bai, Jin Sun, Chuan Chen, Yanping Jia, Yanhe Li, Kuisheng Liu, Yalin Zhang, Jiqing Yin, Yingdong Liu, Xiaoxiao Han et al. · 2022 · Cell Reports
  76. Epigenomics-Based Identification of Major Cell Identity Regulators within Heterogeneous Cell Populations
    Rizwan Rehimi, Miloš Nikolić, Sara Cruz-Molina, Christina Tebartz, Peter Frommolt, Esther Mahabir, Mathieu Clément‐Ziza, Álvaro Rada-Iglesias · 2016 · Cell Reports
  77. Reprogramming of bivalent chromatin states in NRAS mutant melanoma suggests PRC2 inhibition as a therapeutic strategy
    Christopher J. Terranova, Ming Tang, Mayinuer Maitituoheti, Ayush T. Raman, Archit K. Ghosh, Jonathan Schulz, Samirkumar B. Amin, Elias Orouji, Katarzyna J. Tomczak, Sharmistha Sarkar et al. · 2021 · Cell Reports
  78. Postnatal expression of the lysine methyltransferase SETD1B is essential for learning and the regulation of neuron‐enriched genes
    Alexandra Michurina, M. Sadman Sakib, Cemil Kerimoglu, Dennis Manfred Krüger, Lalit Kaurani, Rezaul Islam, Parth Devesh Joshi, Sophie Schröder, Tonatiuh Peña Centeno, Jiayin Zhou et al. · 2021 · The EMBO Journal
  79. H3K4 demethylase KDM5B regulates cancer cell identity and epigenetic plasticity
    Runsheng He, Besa Xhabija, Lijin K. Gopi, Jiji Thulaseedhara Kurup, Zhishan Xu, Zhe Liu, Benjamin L. Kidder · 2022 · Oncogene
  80. Erosion of the Epigenetic Landscape and Loss of Cellular Identity as a Cause of Aging in Mammals
    Yang, Jae-Hyun, Griffin, Patrick T., Vera, Daniel L., Apostolides, John K., Hayano, Motoshi, Meer, Margarita V., Salfati, Elias L., Su, Qiao, Munding, Elizabeth M., Blanchette, Marco et al. · 2019
  81. Concise Review: Conceptualizing Paralogous Stem-Cell Niches and Unfolding Bone Marrow Progenitor Cell Identities
    Kevin G. Chen, Kory R. Johnson, Ronald D.G. McKay, Pamela Gehron Robey · 2017 · Stem Cells
  82. The histone demethylase KDM5 is required for synaptic structure and function at the Drosophila neuromuscular junction
    Helen M. Belálcazar, Emily L. Hendricks, Sumaira Zamurrad, Faith L. W. Liebl, Julie Secombe · 2021 · Cell Reports
  83. Broad H3K4me3 domains: Maintaining cellular identity and their implication in super‐enhancer hijacking
    Daniel Kent, Letizia Marchetti, Aneta Mikulášová, Lisa Jane Russell, Daniel Rico · 2023 · BioEssays
  84. Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits
    Min Wang, Timothy Hancock, Iona M. MacLeod, J.E. Pryce, Benjamin G. Cocks, Ben J. Hayes · 2017 · Genetics Selection Evolution
  85. H3K4me3 is neither instructive for, nor informed by, transcription
    Struan C. Murray, Philipp Lorenz, Françoise S. Howe, Meredith Wouters, Tom Brown, Shidong Xi, Harry Fischl, Walaa Khushaim, Joseph Regish Rayappu, Andrew Angel et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  86. The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions
    Dubois-Chevalier, Julie, Dubois, Vanessa, Dehondt, Hélène, Mazrooei, Parisa, Mazuy, Claire, Sérandour, Aurélien A., Gheeraert, Céline, Guillaume, Penderia, Baugé, Eric, Derudas, Bruno et al. · 2017 · Genome Research
  87. Sex-specific chromatin landscapes in an ultra-compact chordate genome
    Pavla Navrátilová, Gemma Danks, Abby Long, Stephen Butcher, John Robert Manak, Eric M. Thompson · 2017 · Epigenetics & Chromatin
  88. Functional Roles of H3K4 Methylation in Transcriptional Regulation
    Haoming Yu, Bluma J. Lesch · 2024 · Molecular and Cellular Biology
  89. Epigenetic Regulation of Myeloid Cells
    Lionel B. Ivashkiv, Sung Ho Park · 2016 · Microbiology Spectrum
  90. Identification of long noncoding RNAs in Schistosoma mansoni and Schistosoma japonicum
    Qi Liao, Yu-Wei Zhang, Yuchao Zhu, Jia Chen, Changzheng Dong, Tao Yang, He Ai, Jianfa Liu, Zhongdao Wu · 2018 · Experimental Parasitology
  91. Harnessing model organism genomics to underpin the machine learning-based prediction of essential genes in eukaryotes – Biotechnological implications
    Túlio de Lima Campos, Pasi K. Korhonen, Andreas Hofmann, Robin B. Gasser, Neil David Young · 2021 · Biotechnology Advances
  92. Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging
    James R. Occean, Na Yang, Yan Sun, Marshall S. Dawkins, Rachel B. Munk, Cédric Belair, Showkat Ahmad Dar, Carlos Anerillas, Lin Wang, Changyou Shi et al. · 2024 · Nature Communications
  93. SETD1B-mediated broad H3K4me3 controls proper temporal patterns of gene expression critical for spermatid development
    Zhen Lin, Bowen Rong, Ruitu Lyu, Yuxuan Zheng, Chen Yao, Junyi Yan, Meixia Wu, Xiaogang Gao, Fuchou Tang, Fei Lan et al. · 2025 · Cell Research
  94. Chromatin landscapes and genetic risk in systemic lupus
    Joyce S Hui‐Yuen, Lisha Zhu, Lai Ping Wong, Kaiyu Jiang, Yanmin Chen, Tao Liu, James N. Jarvis · 2016 · Arthritis Research & Therapy
  95. Mechanical memory in cells emerges from mechanotransduction with transcriptional feedback and epigenetic plasticity
    Jairaj Mathur, Vivek B. Shenoy, Amit Pathak · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  96. Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes
    Mohamed Belhocine, Mathieu Simonin, José David Abad Flores, Agata Cieślak, Iris Manosalva, Lydie C. Pradel, Charlotte L. Smith, Ève-Lyne Mathieu, Guillaume Charbonnier, Joost H.A. Martens et al. · 2021 · Genome Research
  97. Epigenetic Profiling of H3K4Me3 Reveals Herbal Medicine Jinfukang‐Induced Epigenetic Alteration Is Involved in Anti‐Lung Cancer Activity
    Jun Lü, Xiaoli Zhang, Tingting Shen, Chao Ma, Jun Wu, Hualei Kong, Jing Tian, Zhifeng Shao, Xiaodong Zhao, Ling Xu · 2016 · Evidence-based Complementary and Alternative Medicine
  98. Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo
    Jialin Liu, Michael Frochaux, Vincent Gardeux, Bart Deplancke, Marc Robinson‐Rechavi · 2020 · BMC Biology
  99. Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells
    David Wu, Aunoy Poddar, Elpinickie Ninou, Elizabeth E. Hwang, Mitchel A. Cole, S. John Liu, Max A. Horlbeck, Jin Chen, Joseph M. Replogle, Giovanni A. Carosso et al. · 2022 · Cell Genomics
  100. Differential epigenetic regulation by blue and UV-A light reveals the key role of CsSDG36-mediated H3K4 methylation in leaf development and secondary metabolism in Camellia sinensis
    Pu Wang, Hong Zhang, Yongli Yin, Yue Ge, Binrui Chen, Jing Rong Hu, Yu Wang, Dejiang Ni, Fei Guo · 2025 · Genome biology