The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Advancing the Microbiome Research Community
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The questionnaire questions were adapted from the PhenX toolkit, which provides recommended standard data collection protocols and has been recommended by the microbiome research community.
“These questions were adapted from questionnaires available at the PhenX toolkit (consensus measures for Phenotypes and eXposures), which provides recommended standard data collection protocols for conducting biomedical research [60] and which has been recommended by the microbiome research community [61].”
From Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition (2018) · cites this paper as [61]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The impact of the gut microbiota on human health: an integrative view
Clemente, J. C., Ursell, L. K., Parfrey, L. W., & Knight, R. (2012) · Cell · doi:10.1016/j.cell.2012.01.035 · Cited by 3,710
Self-citationA framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650
Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor
Smith, M. I., Yatsunenko, T., Manary, M. J., Trehan, I., Mkakosya, R., Cheng, J., Kau, A. L., Rich, S. S., Concannon, P., Mychaleckyj, J. C., et al. (2013) · Science · doi:10.1126/science.1229000 · Cited by 1,173
Self-citationPredicting and Manipulating Cardiac Drug Inactivation by the Human Gut Bacterium Eggerthella lenta
Haiser, H. J., Gootenberg, D. B., Chatman, K., Sirasani, G., Balskus, E. P., & Turnbaugh, P. J. (2013) · Science · doi:10.1126/science.1235872 · Cited by 704 · cited 1×
“…drug responses, such as the role of specific strains of the gut Actinobacterium Eggerthella lenta in inactivating the cardiac glycoside drug digoxin (Haiser et al., 2013) and of p-cresol production by certain gut bacteria interfering with host detoxification of acetaminophen (Clayton et al., 2009).”
Flagged first, then by citations
Research works printed but not linked: 11
- Barrett, 2012, Nucleic Acids Res., 40, D57, 10.1093/nar/gkr1163 · DOI
- Beauharnais, 2012, Clin. Trials, 9, 198, 10.1177/1740774511434844 · DOI
- Clayton, 2009, Proc. Natl. Acad. Sci. USA, 106, 14728, 10.1073/pnas.0904489106 · DOI · Paper page
- Hirschman, 2008, OMICS, 12, 129, 10.1089/omi.2008.0016 · DOI
- Ley, 2005, Proc. Natl. Acad. Sci. USA, 102, 11070, 10.1073/pnas.0504978102 · DOI · Paper page
- Mailman, 2007, Nat. Genet., 39, 1181, 10.1038/ng1007-1181 · DOI
- Pan, 2012, Hum. Mutat., 33, 849, 10.1002/humu.22074 · DOI
- Pressler, 2012, BMC Med. Inform. Decis. Mak., 12, 47, 10.1186/1472-6947-12-47 · DOI
- Rhodes, 2011, Am. J. Bioeth., 11, 1, 10.1080/15265161.2011.615588 · DOI
- Richesson, 2010, Adv. Exp. Med. Biol., 686, 87, 10.1007/978-90-481-9485-8_6 · DOI
- Yilmaz, 2011, Nat. Biotechnol., 29, 415, 10.1038/nbt.1823 · DOI
Cited by
Sorted by citations
Characterization of the gut microbiome using 16S or shotgun metagenomics
Jovel, J., Patterson, J., Wang, W., Hotte, N., O'Keefe, S., Mitchel, T., Perry, T., Kao, D., Mason, A. L., Madsen, K. L., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00459 · Cited by 942
Sartor, R. B., & Wu, G. D. (2017) · Gastroenterology · doi:10.1053/j.gastro.2016.10.012 · Cited by 808
The Microbiome Quality Control Project Consortium, Sinha, R., Abu-Ali, G., Vogtmann, E., Fodor, A. A., Ren, B., Amir, A., Schwager, E., Crabtree, J., Ma, S., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3981 · Cited by 587
Self-citationInteractions between Intestinal Microbiota and Host Immune Response in Inflammatory Bowel Disease
Zhang, M., Sun, K., Wu, Y., Yang, Y., Tso, P., & Wu, Z. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.00942 · Cited by 347
Links between the microbiome and bone
Hernandez, C. J., Guss, J. D., Luna, M., & Goldring, S. R. (2016) · Journal of Bone and Mineral Research · doi:10.1002/jbmr.2887 · Cited by 200
Willis, J. R., González-Torres, P., Pittis, A. A., Bejarano, L. A., Cozzuto, L., Andreu-Somavilla, N., Alloza-Trabado, M., Valentín, A., Ksiezopolska, E., Company, C., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0592-3 · Cited by 158
Metadata
- Authors
- Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J., & White, O.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2014-10
- Volume
- 159
- Issue
- 2
- Pages
- 227-230
- ISSN
- 0092-8674
- PMC
- PMC4221798
- Cited by
- 58
- References
- 4
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
