Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming

Soufi, Abdenour, Garcia, Meilin Fernandez, Jaroszewicz, Artur, Osman, Nebiyu, Pellegrini, Matteo, Zaret, Kenneth S.·2015·Cell

DOI 10.1016/j.cell.2015.03.017

Cited by (780)

Items 201–300 of 780

Nucleosome binding by the pioneer transcription factor OCT4
Echigoya, Kenta, Koyama, Masako, Negishi, Lumi, Takizawa, Yoshimasa, Mizukami, Yuka, Shimabayashi, Hideki, Kuroda, Akari, Kurumizaka, Hitoshi · 2020 · Scientific Reports
Chromatin accessibility dynamics during cell fate reprogramming
Dongwei Li, Xiaodong Shu, Ping Zhu, Duanqing Pei · 2021 · EMBO Reports
Chromatin sequesters pioneer transcription factor Sox2 from exerting force on DNA
Tuan N. Nguyen, Sai Li, Jeremy T.-H. Chang, John W. Watters, Htet Ng, Adewola Osunsade, Yael David, Shixin Liu · 2022 · Nature Communications
A screening system to identify transcription factors that induce binding site-directed DNA demethylation
Takahiro Suzuki, Shiori Maeda, Erina Furuhata, Yuri Shimizu, Hajime Nishimura, Mami Kishima, Harukazu Suzuki · 2017 · Epigenetics & Chromatin
Building Principles for Constructing a Mammalian Blastocyst Embryo
Peter Pfeffer · 2018 · Biology
The Diverse Consequences of FOXC1 Deregulation in Cancer
Liam Niall Gilding, Tim C. P. Somervaille · 2019 · Cancers
Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding
Jan Huertas, Caitlin M. MacCarthy, Hans Robert Schöler, Vlad Cojocaru · 2020 · Biophysical Journal
Pro-neuronal activity of Myod1 due to promiscuous binding to neuronal genes
Lee, Qian Yi, Mall, Moritz, Chanda, Soham, Zhou, Bo, Sharma, Kylesh S., Schaukowitch, Katie, Adrian-Segarra, Juan M., Grieder, Sarah D., Kareta, Michael S., Wapinski, Orly L. et al. · 2020 · Nature Cell Biology
A long noncoding RNA, LncMyoD , modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression
Anqi Dong, Christopher Brandon Preusch, Wai‐Kin So, Kangning Lin, Shaoyuan Luan, Ran Yi, Joyce W. Wong, Zhenguo Wu, Tom H. Cheung · 2020 · Proceedings of the National Academy of Sciences
Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
Seraina Blümli, Nicola Wiechens, Mengying Wu, Vijender Singh, Marek Gierliński, Gabriele Schweikert, Nick Gilbert, Catherine Naughton, Ramasubramanian Sundaramoorthy, Joby Varghese et al. · 2021 · Cell Reports
Molecular dynamics of histone H1
Thomas Wayne Flanagan, David T. Brown · 2015 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping
Lilien N. Voong, Liqun Xi, Jiping Wang, Xiaozhong Wang · 2017 · Trends in Genetics
Transcription factor retention on mitotic chromosomes: regulatory mechanisms and impact on cell fate decisions
Mahé Raccaud, David M. Suter · 2017 · FEBS Letters
Diverse heterochromatin states restricting cell identity and reprogramming
Ryan L. McCarthy, Jingchao Zhang, Kenneth S. Zaret · 2023 · Trends in Biochemical Sciences
Genomic insights into chromatin reprogramming to totipotency in embryos
Sabrina Ladstätter, Kiku-e K. Tachibana · 2018 · The Journal of Cell Biology
p63 establishes epithelial enhancers at critical craniofacial development genes
Enrique Lin-Shiao, Yemin Lan, Julia Welzenbach, Katherine A. Alexander, Zhen Zhang, Michael Knapp, Elisabeth Mangold, Morgan A. Sammons, Kerstin U. Ludwig, Shelley L. Berger · 2019 · Science Advances
Chromatin-state barriers enforce an irreversible mammalian cell fate decision
Blanco, M. Andrés, Sykes, David B., Gu, Lei, Wu, Mengjun, Petroni, Ricardo, Karnik, Rahul, Wawer, Mathias, Rico, Joshua, Li, Haitao, Jacobus, William D. et al. · 2021 · Cell Reports
In vivo SOX2 Regulatory Circuitry During Pluripotency Progression Reveals Multifaceted Master TF-Enhancer Interaction
Lijia Li, Fang-Nong Lai, Xiaoyu Hu, Bofeng Liu, Xukun Lu, Zili Lin, Ling Liu, Yunlong Xiang, Tristan Frum, Michael A. Halbisen et al. · 2022 · Science
Dual-role transcription factors stabilize intermediate expression levels
Jinnan He, Xiangru Huo, Gaofeng Pei, Zeran Jia, Yiming Yan, Jiawei Yu, Haozhi Qu, Yunxin Xie, Junsong Yuan, Yuan Zheng et al. · 2024 · Cell
Genome access is transcription factor-specific and defined by nucleosome position
Ralph Stefan Grand, Marco Pregnolato, Lisa Baumgartner, Leslie Hoerner, Lukas Burger, Dirk Schübeler · 2024 · Molecular Cell
Phenotypic Reprogramming of Striatal Neurons into Dopaminergic Neuron-like Cells in the Adult Mouse Brain
Wenze Niu, Tong Zang, Lei-Lei Wang, Yuhua Zou, Chunli Zhang · 2018 · Stem Cell Reports
BZLF1 interacts with chromatin remodelers promoting escape from latent infections with EBV
Marisa Schäffner, Paulina Mrozek-Górska, Alexander Buschle, Anne Woellmer, Takanobu Tagawa, Filippo M. Cernilogar, Gunnar Schotta, Nils Krietenstein, Corinna Lieleg, Philipp Korber et al. · 2019 · Life Science Alliance
Heterochromatin loosening by the Oct4 linker region facilitates Klf4 binding and iPSC reprogramming
Chen, Keshi, Long, Qi, Xing, Guangsuo, Wang, Tianyu, Wu, Yi, Li, Linpeng, Qi, Juntao, Zhou, Yanshuang, Ma, Bochao, Schöler, Hans R et al. · 2020 · The EMBO Journal
Transcription Control of Liver Development
Tachmatzidi, Evangelia C., Galanopoulou, Ourania, Talianidis, Iannis · 2021 · Cells
The NuRD complex cooperates with SALL4 to orchestrate reprogramming
Wang, Bo, Li, Chen, Ming, Jin, Wu, Linlin, Fang, Shicai, Huang, Yi, Lin, Lihui, Liu, He, Kuang, Junqi, Zhao, Chengchen et al. · 2023 · Nature Communications
Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency
Bobbie Pelham‐Webb, Dylan Murphy, Effie Apostolou · 2020 · Stem Cell Reports
Transcriptional Control of Somatic Cell Reprogramming
Yan Xu, Meng Zhang, Wenjuan Li, Xihua Zhu, Xichen Bao, Baoming Qin, Andrew P. Hutchins, Miguel Angel Esteban · 2016 · Trends in Cell Biology
Metastasis Stemming from Circulating Tumor Cell Clusters
Min Yu · 2019 · Trends in Cell Biology
The interplay of chromatin and transcription factors during cell fate transitions in development and reprogramming
Georgina Peñalosa-Ruiz, Ann Rose Bright, Klaas W. Mulder, Gert Jan C. Veenstra · 2019 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Permissive epigenomes endow reprogramming competence to transcriptional regulators
Kee-Pyo Kim, Jinmi Choi, Juyong Yoon, Jan M. Bruder, Borami Shin, Jonghun Kim, Marcos Jesus Araúzo-Bravo, Dong Han, Guangming Wu, Dong‐Wook Han et al. · 2020 · Nature Chemical Biology
JMJD3 acts in tandem with KLF4 to facilitate reprogramming to pluripotency
Yinghua Huang, Hui Zhang, Lulu Wang, Chuanqing Tang, Xiaogan Qin, Xinyu Wu, Meifang Pan, Yujia Tang, Zhongzhou Yang, Isaac A. Babarinde et al. · 2020 · Nature Communications
Structures and consequences of pioneer factor binding to nucleosomes
Edgar Luzete-Monteiro, Kenneth S. Zaret · 2022 · Current Opinion in Structural Biology
Intrinsic DNA binding properties demonstrated for lineage-specifying basic helix-loop-helix transcription factors
Bradford H. Casey, Rahul Krishna Kollipara, Karine Pozo, Jane E. B. Johnson · 2018 · Genome Research
Cross-lineage potential of Ascl1 uncovered by comparing diverse reprogramming regulatomes
Haofei Wang, Benjamin Keepers, Yunzhe Qian, Yifang Xie, Marazzano Colon, Jiandong Liu, Qian Li · 2022 · Cell stem cell
Transcription Factor Reprogramming in the Inner Ear: Turning on Cell Fate Switches to Regenerate Sensory Hair Cells
Amrita A. Iyer, Andrew K. Groves · 2021 · Frontiers in Cellular Neuroscience
Cell-type-specific chromatin occupancy by the pioneer factor Zelda drives key developmental transitions in Drosophila
Elizabeth D. Larson, Hideyuki Komori, Tyler J. Gibson, Cyrina M. Ostgaard, Danielle C. Hamm, Jack Schnell, Cheng‐Yu Lee, Melissa M. Harrison · 2021 · Nature Communications
FOXA transcriptional factor modulates insect susceptibility to Bacillus thuringiensis Cry1Ac toxin by regulating the expression of toxin-receptor ABCC2 and ABCC3 genes
Jianghuai Li, Yuemin Ma, Wanli Yuan, Yutao Xiao, Chenxi Liu, Jia Wang, Jianxin Peng, Rong Peng, Mário Soberón, Alejandra Bravo et al. · 2017 · Insect Biochemistry and Molecular Biology
Biomimetic Artificial Epigenetic Code for Targeted Acetylation of Histones
Junichi Taniguchi, Yihong Feng, Ganesh N. Pandian, Fumitaka Hashiya, Takuya Hidaka, Kaori Hashiya, Soyoung Park, Toshikazu Bando, Shinji Ito, Hiroshi Sugiyama · 2018 · Journal of the American Chemical Society
Hijacking a key chromatin modulator creates epigenetic vulnerability for MYC-driven cancer
Zhenhua Yang, Kushani K. Shah, Theodore Busby, Keith Giles, Alireza Khodadadi‐Jamayran, Wei Li, Hao Jiang · 2018 · Journal of Clinical Investigation
Identification of the Transcription Factor Relationships Associated with Androgen Deprivation Therapy Response and Metastatic Progression in Prostate Cancer
Nitya V. Sharma, Kathryn L. Pellegrini, Véronique Ouellet, Felipe Giuste, S.S. Ramalingam, Kenneth A. Watanabe, Éloïse Adam-Granger, Lucresse Fossouo, Sungyong You, Michael R. Freeman et al. · 2018 · Cancers
CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation
Sabina Sood, Christopher M. Weber, H. Courtney Hodges, A. Krokhotin, Aryaman Shalizi, Gerald R. Crabtree · 2020 · Proceedings of the National Academy of Sciences
Pioneer activity distinguishes activating from non‐activating SOX2 binding sites
Michela Maresca, Teun van den Brand, Hangpeng Li, Hans Teunissen, James O. J. Davies, Elzo de Wit · 2023 · The EMBO Journal
Factor cooperation for chromosome discrimination in Drosophila
Christian Albig, Evgeniya Tikhonova, Silke Krause, Oksana G Maksimenko, Catherine Regnard, Peter B. Becker · 2018 · Nucleic Acids Research
Histone tails cooperate to control the breathing of genomic nucleosomes
Jan Huertas, Hans Robert Schöler, Vlad Cojocaru · 2021 · PLoS Computational Biology
The transcription factor code in iPSC reprogramming
Weixian Deng, Elsie C. Jacobson, Amanda J. Collier, Kathrin Plath · 2021 · Current Opinion in Genetics & Development
D evelopmental C hromatin R estriction of P ro‐ G rowth G ene N etworks A cts as an E pigenetic B arrier to A xon R egeneration in C ortical N eurons
Ishwariya Venkatesh, Vatsal Mehra, Zimei Wang, Ben L. Callif, Murray G. Blackmore · 2018 · Developmental Neurobiology
Combinatorial Action of Temporally Segregated Transcription Factors
Julien Charest, Thomas Daniele, Jingkui Wang, Aleksandr Bykov, Ariane Mandlbauer, Mila Asparuhova, Josef Roehsner, Paula Gutiérrez‐Pérez, Luisa Cochella · 2020 · Developmental Cell
Dynamic nucleosome organization after fertilization reveals regulatory factors for mouse zygotic genome activation
Chenfei Wang, Chuan Chen, Xiaoyu Liu, Chong Li, Qiu Wu, Xiaolan Chen, Lingyue Yang, Xiaochen Kou, Yanhong Zhao, Hong Wang et al. · 2022 · Cell Research
Alternate Roles of Sox Transcription Factors beyond Transcription Initiation
Yuli Zhang, Linlin Hou · 2021 · International Journal of Molecular Sciences
ZFP462 safeguards neural lineage specification by targeting G9A/GLP-mediated heterochromatin to silence enhancers
Ramesh Yelagandula, Karin Stecher, Maria Novatchkova, Luca Michetti, Georg Michlits, Jingkui Wang, Pablo Hofbauer, Gintautas Vainorius, Carina Pribitzer, Luke Isbel et al. · 2023 · Nature Cell Biology
Constructing arrays of nucleosome positioning sequences using Gibson Assembly for single-molecule studies
Dian Spakman, Graeme A. King, Erwin J.G. Peterman, Gijs J. L. Wuite · 2020 · Scientific Reports
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors
Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolás Manosalva Pérez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang et al. · 2021 · Journal of Experimental Botany
Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells
Le Xiong, Erik A Tolen, Jinmi Choi, Sergiy Velychko, Livia Caizzi, Taras Velychko, Kenjiro Adachi, Caitlin M. MacCarthy, Michael Lidschreiber, Patrick Cramer et al. · 2022 · eLife
Chromatin structure meets cryo-EM: Dynamic building blocks of the functional architecture
Yoshimasa Takizawa, Hitoshi Kurumizaka · 2022 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming
Surag Nair, Mohamed Ameen, Laksshman Sundaram, Anusri Pampari, Jacob Matthew Schreiber, Akshay Balsubramani, Yu Xin Wang, David Burns, Helen M. Blau, Ioannis Karakikes et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
CTCF coordinates cell fate specification via orchestrating regulatory hubs with pioneer transcription factors
Yuting Liu, Xin Wan, Hu Li, Yingxi Chen, Xiaodi Hu, Hebing Chen, Dahai Zhu, Cheng Li, Yong Zhang · 2023 · Cell Reports
Highly cooperative chimeric super-SOX induces naive pluripotency across species
Caitlin M. MacCarthy, Guangming Wu, Vikas Malik, Yotam Menuchin-Lasowski, Taras Velychko, Gal Keshet, Rui Fan, Ivan Bedzhov, George McDonald Church, Ralf Jauch et al. · 2023 · Cell stem cell
Biological importance of OCT transcription factors in reprogramming and development
Kim, Kee-Pyo, Han, Dong Wook, Kim, Johnny, Schöler, Hans R. · 2021 · Experimental & Molecular Medicine
Epigenetics in LMNA-Related Cardiomyopathy
Yinuo Wang, Gergana D. Dobreva · 2023 · Cells
X-ray structure of the MMTV-A nucleosome core
T.D. Frouws, Sylwia Duda, Timothy J. Richmond · 2016 · Proceedings of the National Academy of Sciences
Selecting optimal combinations of transcription factors to promote axon regeneration: Why mechanisms matter
Ishwariya Venkatesh, Murray G. Blackmore · 2016 · Neuroscience Letters
A c-Myb mutant causes deregulated differentiation due to impaired histone binding and abrogated pioneer factor function
Fuglerud, Bettina M., Lemma, Roza B., Wanichawan, Pimthanya, Sundaram, Arvind Y. M., Eskeland, Ragnhild, Gabrielsen, Odd S. · 2017 · Nucleic Acids Research
Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions
Rajarshi P. Ghosh, Quanming Shi, Linfeng Yang, Michael P. Reddick, Nikitina Tv, Victor B. Zhurkin, Polly Morrell Fordyce, Timothy J. Stasevich, Howard Y. Chang, William James Greenleaf et al. · 2019 · Nature Communications
SOX9 reprograms endothelial cells by altering the chromatin landscape
Fuglerud, Bettina M, Drissler, Sibyl, Lotto, Jeremy, Stephan, Tabea L, Thakur, Avinash, Cullum, Rebecca, Hoodless, Pamela A · 2022 · Nucleic Acids Research
Different chromatin-scanning modes lead to targeting of compacted chromatin by pioneer factors FOXA1 and SOX2
Jonathan Lerner, Andrew Katznelson, Jingchao Zhang, Kenneth S. Zaret · 2023 · Cell Reports
Chromatin remodeling effects on enhancer activity
Estela G. García-González, Martín Escamilla-Del-Arenal, Rodrigo G. Arzate‐Mejía, Félix Recillas Targa · 2016 · Cellular and Molecular Life Sciences
Transactivation of Herpes Simplex Virus 1 (HSV-1) Infected Cell Protein 4 Enhancer by Glucocorticoid Receptor and Stress-Induced Transcription Factors Requires Overlapping Krüppel-Like Transcription Factor 4/Sp1 Binding Sites
Jeffery B. Ostler, Prasanth Thunuguntla, Bailey Y. Hendrickson, Clinton Jones · 2020 · Journal of Virology
OCT4 interprets and enhances nucleosome flexibility
Caitlin M. MacCarthy, Jan Huertas, Claudia Ortmeier, Hermann vom Bruch, Daisylyn Senna Tan, Deike Reinke, Astrid Sander, Tim Bergbrede, Ralf Jauch, Hans Robert Schöler et al. · 2022 · Nucleic Acids Research
DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2
Sveinn Bjarnason, Jordan A. P. McIvor, Andreas Prestel, Kinga S. Demény, Jakob Tómas Bullerjahn, Birthe Brandt Kragelund, Davide Mercadante, Pétur O. Heidarsson · 2024 · Nature Communications
From Endoderm to Liver Bud
Kenneth S. Zaret · 2016 · Current topics in developmental biology/Current Topics in Developmental Biology
Diverse mechanisms of IRF5 action in inflammatory responses
Tariq E. Khoyratty, Irina A. Udalova · 2018 · The International Journal of Biochemistry & Cell Biology
A protein activity assay to measure global transcription factor activity reveals determinants of chromatin accessibility
Bei Wei, Arttu Jolma, Biswajyoti Sahu, Lukas M. Orre, Fan Zhong, Fangjie Zhu, Teemu Kivioja, Inderpreet Sur, Janne Lehtiö, Minna Taipale et al. · 2018 · Nature Biotechnology
Ranking reprogramming factors for cell differentiation
Jennifer Hammelman, Tulsi Patel, Michael Closser, Hynek Wichterle, David Kenneth Gifford · 2022 · Nature Methods
Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity
Katsuda, Takeshi, Sussman, Jonathan H., Ito, Kenji, Katznelson, Andrew, Yuan, Salina, Takenaka, Naomi, Li, Jinyang, Merrell, Allyson J., Cure, Hector, Li, Qinglan et al. · 2024 · Nature Communications
Human induced pluripotent stem cells: A disruptive innovation
John De Vos, Julien Bouckenheimer, Caroline Sansac, Jean-Marc Lemaı̂tre, Saïd Assou · 2016 · Current Research in Translational Medicine
Changes in Gene Expression and Estrogen Receptor Cistrome in Mouse Liver Upon Acute E2 Treatment
Gaëlle Palierne, Aurélie Fabre, Romain Solinhac, Christine Le Péron, Stéphane Avner, Françoise Lenfant, Coralie Fontaine, Gilles Salbert, Gilles Flouriot, Jean‐François Arnal et al. · 2016 · Molecular Endocrinology
Structural mechanism of LIN28B nucleosome targeting by OCT4
R. Guan, Tengfei Lian, Bing‐Rui Zhou, David Lee Wheeler, Yawen Bai · 2023 · Molecular Cell
C2H2 proteins: Evolutionary aspects of domain architecture and diversification
Artem N. Bonchuk, Pavel G Georgiev · 2024 · BioEssays
MyoD reprogramming requires Six1 and Six4 homeoproteins: genome-widecis-regulatory module analysis
Marc Santolini, Iori Sakakibara, Morgane Gauthier, Francesc Ribas‐Aulinas, Hirotaka Takahashi, Tatsuya Sawasaki, Vincent Mouly, Jean‐Paul Concordet, Pierre‐Antoine Defossez, Vincent Hakim et al. · 2016 · Nucleic Acids Research
Pioneering the chromatin landscape
Kenneth S. Zaret · 2018 · Nature Genetics
Recent advances of induced pluripotent stem cells application in neurodegenerative diseases
Nashwa Amin, Xiaoning Tan, Qiannan Ren, Ning Zhu, Benson O. A. Botchway, Zhiying Hu, Marong Fang · 2019 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones
Daniel Espiritu, Anna K. Gribkova, Shubhangi Gupta, Alexey К. Shaytan, Anna R. Panchenko · 2021 · The Journal of Physical Chemistry B
Pioneer factors in development and cancer
Benjamin D. Sunkel, Benjamin Z. Stanton · 2021 · iScience
A quantitative metric of pioneer activity reveals that HNF4A has stronger in vivo pioneer activity than FOXA1
Jeffrey L Hansen, Barak A. Cohen · 2022 · Genome biology
Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells
Almira A. Chervova, Amandine Molliex, H. Irem Baymaz, Rémi-Xavier Coux, Thaleia Papadopoulou, Florian Mueller, Eslande Hercul, David Fournier, Agnès Dubois, Nicolas Gaïani et al. · 2024 · Nature Structural & Molecular Biology
Epigenetic Mechanisms Regulating Adaptive Responses to Targeted Kinase Inhibitors in Cancer
Steven P. Angus, Jon S. Zawistowski, Gary L. Johnson · 2017 · The Annual Review of Pharmacology and Toxicology
How structural biology transformed studies of transcription regulation
Cynthia Wolberger · 2021 · Journal of Biological Chemistry
Pax7 pioneer factor action requires both paired and homeo DNA binding domains
Audrey Pelletier, Alexandre Mayran, Arthur Gouhier, James G. Omichinski, Aurélio Balsalobre, Jacques Drouin · 2021 · Nucleic Acids Research
Pluripotency factors determine gene expression repertoire at zygotic genome activation
Meijiang Gao, Marina Veil, Marcus Rosenblatt, Aileen Julia Riesle, Anna Gebhard, Helge Hass, Lenka Buryanova, Lev Y. Yampolsky, Björn Andreas Grüning, Sergey V. Ulianov et al. · 2022 · Nature Communications
GATA4 Regulates Developing Endocardium Through Interaction With ETS1
Pingzhu Zhou, Yan Zhang, Isha Sethi, Lincai Ye, Michael A. Trembley, Yangpo Cao, Brynn N. Akerberg, Feng Xiao, Xiaoran Zhang, Kai Li et al. · 2022 · Circulation Research
Putting chromatin in its place: the pioneer factor NeuroD1 modulates chromatin state to drive cell fate decisions
Alexander Glahs, Robert P. Zinzen · 2015 · The EMBO Journal
TALE factors use two distinct functional modes to control an essential zebrafish gene expression program
Franck Ladam, William Stanney, Ian J. Donaldson, Ozge Yildiz, Nicoletta Bobola, Charles G. Sagerström · 2018 · eLife
Automatic identification of small molecules that promote cell conversion and reprogramming
Francesco Napolitano, Trisevgeni Rapakoulia, Patrizia Annunziata, Akira Hasegawa, Mélissa Cardon, Sara Napolitano, Lorenzo Vaccaro, Antonella Iuliano, Luca G. Wanderlingh, Takeya Kasukawa et al. · 2021 · Stem Cell Reports
MicroRNA Roles in Cell Reprogramming Mechanisms
Emilia Pascale, Carmen Caiazza, Martina Paladino, Silvia Parisi, Fabiana Passaro, Massimiliano Caiazzo · 2022 · Cells
Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors
Xionghui Lin, Benjamin Swedlund, Mai-Linh Nu Ton, Shila Ghazanfar, Carolina Guibentif, Catherine Paulissen, Elodie Baudelet, Elise Plaindoux, Younès Achouri, Emilie Calonne et al. · 2022 · Nature Cell Biology
Loss of Interdependent Binding by the FoxO1 and FoxA1/A2 Forkhead Transcription Factors Culminates in Perturbation of Active Chromatin Marks and Binding of Transcriptional Regulators at Insulin-sensitive Genes
Akua Koaso Yalley, Daniel Schill, Mitsutoki Hatta, Nicole M. Johnson, Lisa Ann Cirillo · 2016 · Journal of Biological Chemistry
Epigenetic Control of Reprogramming and Transdifferentiation by Histone Modifications
Hua Qin, Andong Zhao, Cuiping Zhang, Xiaobing Fu · 2016 · Stem Cell Reviews and Reports
Genomic effects of glucocorticoids
Ivana Grbeša, Ofir Hakim · 2016 · PROTOPLASMA
Pioneer Factors in Animals and Plants—Colonizing Chromatin for Gene Regulation
Xuelei Lai, Leonie Verhage, Véronique Hugouvieux, Chloé Zubieta · 2018 · Molecules
Biphotonic Ionization of DNA : From Model Studies to Cell
Jean Cadet, J. Richard Wagner, Dimitar Angelov · 2018 · Photochemistry and Photobiology