Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
Shekhar, Karthik, Lapan, Sylvain W., Whitney, Irene E., Tran, Nicholas M., Macosko, Evan Z., Kowalczyk, Monika, Adiconis, Xian, Levin, Joshua Z. +6 more·2016·Cell
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- Zero-preserving imputation of scRNA-seq data using low-rank approximationGeorge C. Linderman, Jun Zhao, Yuval Kluger · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Cross-Species Analysis of Single-Cell Transcriptomic DataMaxwell E. R. Shafer · 2019 · Frontiers in Cell and Developmental Biology
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- Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALTBushra Raj, James A. Gagnon, Alexander F. Schier · 2018 · Nature Protocols
- Microfluidics for Neuronal Cell and Circuit EngineeringRouhollah Habibey, Jesús Eduardo Rojo Arias, Johannes Striebel, Volker Busskamp · 2022 · Chemical Reviews
- Continuous Variation within Cell Types of the Nervous SystemMark S. Cembrowski, Vilas Menon · 2018 · Trends in Neurosciences
- Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene RegulationJonathan S. Packer, Cole Trapnell · 2018 · Trends in Genetics
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- Integrated analysis of single cell transcriptomic data across conditions, technologies, and speciesButler, Andrew, Satija, Rahul · 2017
- Selecting single cell clustering parameter values using subsampling-based robustness metricsRyan B. Patterson Cross, Ariel J. Levine, Vilas Menon · 2021 · BMC Bioinformatics
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- Single-cell genomics to guide human stem cell and tissue engineeringJ. Gray Camp, Damian Wollny, Barbara Treutlein · 2018 · Nature Methods
- The State of the NIH BRAIN InitiativeWalter J. Koroshetz, Joshua A. Gordon, Amy Bany Adams, Andrea C. Beckel-Mitchener, James D. Churchill, Gregory K. Farber, Michelle P. Freund, Jim Gnadt, Nina S. Hsu, Nicholas B. Langhals et al. · 2018 · Journal of Neuroscience
- Batch alignment of single-cell transcriptomics data using deep metric learningXiaokang Yu, Xinyi Xu, Jingxiao Zhang, Xiangjie Li · 2023 · Nature Communications
- scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch EffectKaterina Boufea, Sohan Seth, Nizar N. Batada · 2020 · iScience
- Single-Cell Classification Using Mass Spectrometry through Interpretable Machine LearningYuxuan Richard Xie, Daniel C. Castro, Sara E. Bell, Stanislav S. Rubakhin, Jonathan V. Sweedler · 2020 · Analytical Chemistry
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- Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomicsAyshwarya Subramanian, Mikhail Alperovich, Yiming Yang, Bo Li · 2022 · Genome biology
- Diversity of oligodendrocytes and their progenitorsLeda Dimou, Mikael Simons · 2017 · Current Opinion in Neurobiology
- A single-cell transcriptomic atlas of the developing chicken limbChristian Feregrino, Fabio Sacher, Oren Parnas, Patrick Tschopp · 2019 · BMC Genomics
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- Brain Transcriptome Databases: A User's GuideJason M. Keil, Adel Qalieh, Kenneth Y. Kwan · 2018 · Journal of Neuroscience
- Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT+ Endothelial Progenitor CellsXiaomeng Ren, Vladimir Ustiyan, Minzhe Guo, Guolun Wang, Craig Bolte, Yufang Zhang, Yan Juan Xu, Jeffrey A. Whitsett, Tanya V. Kalin, Vladimir V. Kalinichenko · 2019 · American Journal of Respiratory and Critical Care Medicine
- A statistical simulator scDesign for rational scRNA-seq experimental designWei Vivian Li, Jingyi Jessica Li · 2019 · Bioinformatics
- Light-Seq: light-directed in situ barcoding of biomolecules in fixed cells and tissues for spatially indexed sequencingJocelyn Y. Kishi, Ninning Liu, Emma R. West, Kuanwei Sheng, Jack J. Jordanides, Matthew P. Serrata, Constance L. Cepko, Sinem K. Saka, Peng Yin · 2022 · Nature Methods
- Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq dataVilas Menon · 2017 · Briefings in Functional Genomics
- SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profilesXie, Peng, Gao, Mingxuan, Wang, Chunming, Zhang, Jianfei, Noel, Pawan, Yang, Chaoyong, Von Hoff, Daniel, Han, Haiyong, Zhang, Michael Q, Lin, Wei · 2019 · Nucleic Acids Research
- The promise of single-cell RNA sequencing for kidney disease investigationHao Wu, Benjamin D. Humphreys · 2017 · Kidney International
- Deep learning tackles single-cell analysis—a survey of deep learning for scRNA-seq analysisMario A. Flores, Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu‐Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou‐Jiang Gao et al. · 2021 · Briefings in Bioinformatics
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- Single-cell RNA-seq clustering: datasets, models, and algorithmsLihong Peng, Xiongfei Tian, Geng Tian, Junlin Xu, Xin Huang, Yanbin Weng, Jialiang Yang, Liqian Zhou · 2020 · RNA Biology
- Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinementBrian Thomas Kalish, Lucas Cheadle, Siniša Hrvatin, M. Aurel Nagy, Samuel A. Rivera, Megan Crow, Jesse A Gillis, Rory D. Kirchner, Michael E. Greenberg · 2018 · Proceedings of the National Academy of Sciences
- The Human Cell AtlasAviv Regev, Sarah Amalia Teichmann, Eric S. Lander, Ido Amit, Christophe O. Benoist, Ewan Birney, Bernd Bodenmiller, Peter J. Campbell, Piero Carninci, Menna Ruth Clatworthy et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Adult Human Glioblastomas Harbor Radial Glia-like CellsRong Wang, Roshan Sharma, Xiaojuan Shen, Ashley Marie Laughney, Kosuke Funato, Philip J. Clark, Monika Shpokayte, Peter F. Morgenstern, Monalisa Navare, Yichi Xu et al. · 2020 · Stem Cell Reports
- Single-cell analysis reveals inflammatory interactions driving macular degenerationManik Razdan Kuchroo, Marcello DiStasio, Eric Song, Eda Calapkulu, Le Zhang, Maryam Ige, Amar H. Sheth, Abdelilah Majdoubi, Madhvi Menon, Alexander Tong et al. · 2023 · Nature Communications
- Diversification of multipotential postmitotic mouse retinal ganglion cell precursors into discrete typesShekhar, Karthik, Whitney, Irene E, Butrus, Salwan, Peng, Yi-Rong, Sanes, Joshua R · 2022 · eLife
- Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architectureYanfang Lu, Miao Liu, Jennifer Yang, Sherman M. Weissman, Xinghua Pan, Samuel G. Katz, Siyuan Wang · 2021 · Cell Discovery
- Single-cell transcriptome analysis of regenerating RGCs reveals potent glaucoma neural repair genesLiang Li, Fang Fang, Xue Feng, Pei Zhuang, Haoliang Huang, Pingting Liu, Liang Liu, Adam Z Xu, Lei S. Qi, Le Cong et al. · 2022 · Neuron
- A single-cell transcriptome atlas of glial diversity in the human hippocampus across the postnatal lifespanSu, Yijing, Zhou, Yi, Bennett, Mariko L., Li, Shiying, Carceles-Cordon, Marc, Lu, Lu, Huh, Sooyoung, Jimenez-Cyrus, Dennisse, Kennedy, Benjamin C., Kessler, Sudha K. et al. · 2022 · Cell Stem Cell
- Retinal organoids on-a-chip: a micro-millifluidic bioreactor for long-term organoid maintenanceXue, Yuntian, Seiler, Magdalene J., Tang, William C., Wang, Jasmine Y., Delgado, Jeffrey, McLelland, Bryce T., Nistor, Gabriel, Keirstead, Hans S., Browne, Andrew W. · 2021 · Lab on a Chip
- Spatial organization of the mouse retina at single cell resolution by MERFISHJongsu Choi, Jin Li, Salma Ferdous, Qingnan Liang, Jeffrey R. Moffitt, Rui Chen · 2023 · Nature Communications
- Fasting reshapes tissue-specific niches to improve NK cell-mediated anti-tumor immunityRebecca B. Delconte, Mark Owyong, Endi K. Santosa, Katja Srpan, Sam Sheppard, Tomi J. McGuire, Aamna J. Abbasi, Carlos Díaz-Salazar, Jerold J. M. Chun, Inez Rogatsky et al. · 2024 · Immunity
- Fluorescent analysis of bioactive molecules in single cells based on microfluidic chipsYuanyuan Fan, Defang Dong, Qingling Li, Haibin Si, Haimeng Pei, Li Lu, Bo Tang · 2018 · Lab on a Chip
- Optic nerve regeneration screen identifies multiple genes restricting adult neural repairJane A. Lindborg, Nicholas M. Tran, Devon M. Chenette, Kristin DeLuca, Yram Foli, Ramakrishnan Kannan, Yuichi Sekine, Xingxing Wang, Marius Wollan, In-Jung Kim et al. · 2021 · Cell Reports
- Automatic cell type identification methods for single-cell RNA sequencingXie, Bingbing, Jiang, Qin, Mora, Antonio, Li, Xuri · 2021 · Computational and Structural Biotechnology Journal
- Single-Cell Transcriptomics in Cancer Immunobiology: The Future of Precision OncologyFátima Valdés‐Mora, Kristina Handler, Andrew M. K. Law, Robert Salomon, Samantha Richelle Oakes, Christopher John Ormandy, David Gallego‐Ortega · 2018 · Frontiers in Immunology
- On and off signaling pathways in the retina and the visual systemTomomi Ichinose, Samar Habib · 2022 · Frontiers in Ophthalmology
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- Subcellular proteomics of dopamine neurons in the mouse brainBenjamin D. Hobson, Se Joon Choi, Eugene V Mosharov, Rajesh K Soni, David Sulzer, Peter A. Sims · 2022 · eLife
- Bi-order multimodal integration of single-cell dataJinzhuang Dou, Shaoheng Liang, Vakul Mohanty, Qi Miao, Yuefan Huang, Qingnan Liang, Xuesen Cheng, Sangbae Kim, Jongsu Choi, Yumei Li et al. · 2022 · Genome biology
- Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinasFuguo Wu, Jonathan Bard, Julien Kann, Donald Albert Yergeau, Darshan Sapkota, Yichen Ge, Zihua Hu, Jie Wang, Tao Liu, Xiuqian Mu · 2021 · Nature Communications
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- Advances and applications in single-cell and spatial genomicsJingjing Wang, Fang Ye, Haoxi Chai, Yujia Jiang, Teng Wang, Xia Ran, Qimin Xia, Ziye Xu, Yuting Fu, Guodong Zhang et al. · 2024 · Science China Life Sciences
- Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neuronsQuentin Lo Giudice, Marion Leleu, Gioele La Manno, Pierre J. Fabre · 2019 · Development
- Molecular signatures of retinal ganglion cells revealed through single cell profilingLauren A. Laboissonniere, Jillian J. Goetz, Gregory M. Martin, Ran Bi, Terry J. S. Lund, Laura Ellson, Madison R. Lynch, Bailey Mooney, Hannah Wickham, Peng Liu et al. · 2019 · Scientific Reports
- A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumorsMichal Slyper, Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Christopher S. Smillie, Gabriela Smith-Rosario, Jingyi Wu, Danielle Ashley Dionne et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Limitations and Promise of Retinal Tissue From Human Pluripotent Stem Cells for Developing Therapies of BlindnessRatnesh Kumar Singh, Igor O. Nasonkin · 2020 · Frontiers in Cellular Neuroscience
- Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and FunctionEmily Ling-Lin Pai, Daniel L. Vogt, Alexandra Clemente-Perez, Gabriel L. McKinsey, Frances S. Cho, Jia Sheng Hu, Matthew Wimer, Anirban Paul, Siavash Fazel Darbandi, Ramón Pla et al. · 2019 · Cell Reports
- Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic CellsWang, Xiaojun, Tucciarone, Jason, Jiang, Siqi, Yin, Fangfang, Wang, Bor-Shuen, Wang, Dingkang, Jia, Yao, Jia, Xueyan, Li, Yuxin, Yang, Tao et al. · 2019 · Cell Reports
- Single-cell RNA sequencing in vision research: Insights into human retinal health and diseaseAndrew P. Voigt, Nathaniel K. Mullin, Edwin M. Stone, Budd A. Tucker, Todd E. Scheetz, Robert F. Mullins · 2020 · Progress in Retinal and Eye Research
- Molecular codes for cell type specification in Brn3 retinal ganglion cellsSzilard Sajgo, Miruna Georgiana Ghinia Tegla, Matthew Brooks, Friedrich Kretschmer, Katherine Chuang, Suja Hiriyanna, Zhijian Wu, Octavian Popescu, Tudor C. Badea · 2017 · Proceedings of the National Academy of Sciences
- Cell type discovery using single-cell transcriptomics: implications for ontological representationBrian D. Aevermann, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Alexander D. Diehl, David Osumi-Sutherland, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann · 2018 · Human Molecular Genetics
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- An interpretable deep-learning architecture of capsule networks for identifying cell-type gene expression programs from single-cell RNA-sequencing dataWang, Lifei, Nie, Rui, Yu, Zeyang, Xin, Ruyue, Zheng, Caihong, Zhang, Zhang, Zhang, Jiang, Cai, Jun · 2020 · Nature Machine Intelligence
- Human Organoids for the Study of Retinal Development and DiseaseClaire M. Bell, Donald J. Zack, Cynthia A. Berlinicke · 2020 · Annual Review of Vision Science
- A multi-omics atlas of the human retina at single-cell resolutionQingnan Liang, Xuesen Cheng, Jun Wang, Leah A. Owen, Akbar Shakoor, John L. Lillvis, Charles Zhang, Michael H. Farkas, Ivana K. Kim, Yumei Li et al. · 2023 · Cell Genomics
- Homeostatic Plasticity Shapes Cell-Type-Specific Wiring in the RetinaNai-Wen Tien, Florentina Soto, Daniel Kerschensteiner · 2017 · Neuron
- Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass SpectrometryElizabeth K. Neumann, Joanna F. Ellis, Amelia E. Triplett, Stanislav S. Rubakhin, Jonathan V. Sweedler · 2019 · Analytical Chemistry
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- Soluble CX3CL1 gene therapy improves cone survival and function in mouse models of retinitis pigmentosaSean K. Wang, Yunlu Xue, Parimal C. Rana, Christin M. Hong, Constance L. Cepko · 2019 · Proceedings of the National Academy of Sciences
- Synapse type-specific proteomic dissection identifies IgSF8 as a hippocampal CA3 microcircuit organizerNuno Apóstolo, Samuel N. Smukowski, Jeroen Vanderlinden, Giuseppe Condomitti, Vasily Rybakin, Jolijn ten Bos, Laura Trobiani, Sybren Portegies, Kristel M. Vennekens, Natalia V. Gounko et al. · 2020 · Nature Communications
- Rod and cone interactions in the retinaGordon Fain, Alapakkam P. Sampath · 2018 · F1000Research
- Deciphering Brain Complexity using Single-Cell SequencingQuanhua Mu, Yiyun Chen, Jiguang Wang · 2019 · Genomics Proteomics & Bioinformatics
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- Molecular dissection of CD8+ T cell dysfunctionChao Wang, Meromit Singer, A. Anderson · 2017 · Trends in immunology
- Direction selectivity in retinal bipolar cell axon terminalsAkihiro Matsumoto, Weaam Agbariah, Stella Solveig Nolte, Rawan Andrawos, Hadara Levi, Shai Sabbah, Keisuke Yonehara · 2021 · Neuron