Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

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  83. The SNARE regulator Complexin3 is a target of the cone circadian clock
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  85. Propensity score matching enables batch-effect-corrected imputation in single-cell RNA-seq analysis
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  87. Pivotal roles of Fezf2 in differentiation of cone OFF bipolar cells and functional maturation of cone ON bipolar cells in retina
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  88. Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification
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  89. Pan-cancer mapping of single T cell profiles reveals a TCF1:CXCR6-CXCL16 regulatory axis essential for effective anti-tumor immunity
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  90. Cellular evolution of the hypothalamic preoptic area of behaviorally divergent deer mice
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  91. Müller Cell Molecular Heterogeneity: Facts and Predictions
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  92. Comprehensive single-cell RNA-seq analysis using deep interpretable generative modeling guided by biological hierarchy knowledge
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