Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

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    Zhiwei Zeng, Nan Miao, Tao Sun · 2018 · Stem Cell Research & Therapy
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    Mark S. Cembrowski · 2019 · Journal of Neuroscience Methods
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    Yuste, Rafael, Hawrylycz, Michael, Aalling, Nadia, Aguilar-Valles, Argel, Arendt, Detlev, Armañanzas, Ruben, Ascoli, Giorgio A., Bielza, Concha, Bokharaie, Vahid, Bergmann, Tobias Borgtoft et al. · 2020 · Nature Neuroscience
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    Cyril Cros, Oliver Hobert · 2022 · Proceedings of the National Academy of Sciences
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    Jen-Chun Hsiang, Keith P. Johnson, Linda Madisen, Hongkui Zeng, Daniel Kerschensteiner · 2017 · eLife
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    Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido · 2023 · BMC Bioinformatics
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    Ying Cheng, Man Zhang, Rong Hua Xu, Lingli Fu, Mei Xue, Chaofei Xu, Chao Tang, Ting Fang, Xiaohuan Liu, Bei Sun et al. · 2024 · Experimental Gerontology
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    Robert Evan Johnson, Nai-Wen Tien, Ning Shen, James T. Pearson, Florentina Soto, Daniel Kerschensteiner · 2017 · Nature Communications
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    S. Sean Millard, Matthew Y. Pecot · 2018 · Neural Development
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    Jialei Duan, Boxun Li, Minoti Bhakta, Shiqi Xie, Pei Zhou, Nikhil V. Munshi, Gary C. Hon · 2019 · Cell Reports
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    Florentina Soto, Nai-Wen Tien, Anurag Goel, Lei Zhao, Philip A. Ruzycki, Daniel Kerschensteiner · 2019 · Cell Reports
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46. Integrated multi-omics single cell atlas of the human retina
    Jin Li, Jun Wang, Ignacio L. Ibarra, Xuesen Cheng, Malte D. Luecken, Jiaxiong Lu, Aboozar Monavarfeshani, Wenjun Yan, Yiqiao Zheng, Zhen C. Zuo et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
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    Tom Baden, Juan Manuel Angueyra, Jenny M. Bosten, Shaun P. Collin, Bevil R. Conway, Fabio Cortesi, Karin Dedek, Thomas Euler, Iñigo Novales Flamarique, Anna Franklin et al. · 2025 · PLoS Biology
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    Laura Hanson, Prathyusha Ravi-Chander, David M. Berson, Gautam Bhagwan Awatramani · 2023 · Cell Reports
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    Pablo G. Cámara · 2017 · Current Opinion in Systems Biology
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    Kobak, Dmitry, Bernaerts, Yves, Weis, Marissa A., Scala, Federico, Tolias, Andreas S., Berens, Philipp · 2021 · Journal of the Royal Statistical Society Series C: Applied Statistics
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    Benjamin D. Hobson, Adrien T. Stanley, Mark B. De Los Santos, Bruce Culbertson, Eugene V. Mosharov, Peter A. Sims, David L. Sulzer · 2023 · Brain Behavior and Immunity
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    Kenta Sato, Koki Tsuyuzaki, Kentaro Shimizu, Itoshi Nikaido · 2019 · Genome biology
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    Bernard Khor, Kara L. Conway, Abdifatah S. Omar, Moshe Biton, Adam L. Haber, Noga Rogel, Leigh A. Baxt, Jakob Begun, Petric Kuballa, John D Gagnon et al. · 2019 · The Journal of Immunology
55. scINSIGHT for interpreting single-cell gene expression from biologically heterogeneous data
    Kun Qian, Shiwei Fu, Hongwei Li, Wei Vivian Li · 2022 · Genome biology
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    Yuge Wang, Tianyu Liu, Hongyu Zhao · 2022 · Bioinformatics
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    Ruiqing Zheng, Zhenlan Liang, Xiang Chen, Yu Tian, Chen Cao, Min Li · 2020 · Frontiers in Genetics
58. Combined microRNA and mRNA detection in mammalian retinas by in situ hybridization chain reaction
    Pei Zhuang, Huanqing Zhang, Ryan M. Welchko, Robert C. Thompson, Shun-Bin Xu, D. Turner · 2020 · Scientific Reports
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    Seema Banerjee, Qin Wang, Fuxin Zhao, George Tang, Chunghim So, Dennis Y. Tse, Chi Ho To, Yun Feng, Xiangtian Zhou, Feng Pan · 2020 · Frontiers in Cellular Neuroscience
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    Natalie R. Hamilton, Andrew J. Scasny, Alex L. Kolodkin · 2021 · Developmental Biology
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    Pengcheng Shu, Chao Wu, Wei Liu, Xiangbin Ruan, Chang Liu, Lin Hou, Yi Zeng, Hongye Fu, Ming Wang, Pan Chen et al. · 2018 · Journal of Biological Chemistry
62. Molecular Cross-Validation for Single-Cell RNA-seq
    Joshua Batson, Löıc A. Royer, James T. Webber · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
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    Michael J. Fitzpatrick, Daniel Kerschensteiner · 2022 · Progress in Retinal and Eye Research
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    Jinzhuang Dou, Shaoheng Liang, Vakul Mohanty, Xuesen Cheng, Sangbae Kim, Jongsu Choi, Yumei Li, Katayoun Rezvani, Rui Chen, Ken Chen · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
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    Ryan B. MacDonald, Mark A. Charlton-Perkins, William A. Harris · 2017 · Current Opinion in Neurobiology
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    Takae Kiyama, Ye Long, Ching-Kang Chen, Christopher M. Whitaker, Allison Shay, Hongyu Wu, Tudor C. Badea, Amir Mohsenin, Jan Parker‐Thornburg, William H. Klein et al. · 2019 · Cell Reports
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