In toto imaging and reconstruction of post-implantation mouse development at the single-cell level

Adam: A Method for Stochastic Optimization

Kingma, D. P., & Ba, J. (2014) · arXiv · doi:10.48550/arxiv.1412.6980 · Cited by 98,946 · see citing works

Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift

Ioffe, S., & Szegedy, C. (2015) · arXiv · doi:10.48550/arxiv.1502.03167 · Cited by 27,818 · see citing works

A method for registration of 3-D shapes

Besl, P. J., & McKay, N. D. (1992) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/34.121791 · Cited by 18,363 · see citing works

The Hungarian method for the assignment problem

Kuhn, H. W. (1955) · Naval Research Logistics Quarterly · doi:10.1002/nav.3800020109 · Cited by 13,120 · see citing works

TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems

Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G. S., Davis, A., Dean, J., Devin, M., et al. (2016) · arXiv · doi:10.48550/arxiv.1603.04467 · Cited by 9,408 · see citing works

Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy

Huisken, J., Swoger, J., Bene, F. D., Wittbrodt, J., & Stelzer, E. H. K. (2004) · Science · doi:10.1126/science.1100035 · Cited by 2,370 · see citing works

Animating rotation with quaternion curves

Shoemake, K. (1985) · ACM SIGGRAPH Computer Graphics · doi:10.1145/325165.325242 · Cited by 1,735 · see citing works

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

Keller, P., Schmidt, A. D., Wittbrodt, J., & Stelzer, E. H. K. (2008) · Science · doi:10.1126/science.1162493 · Cited by 1,569 · see citing works

A New Statistical Approach to Geographic Variation Analysis

Gabriel, K. R., & Sokal, R. R. (1969) · Systematic Zoology · doi:10.2307/2412323 · Cited by 1,289 · see citing works

Vector median filters

Astola, J. T., Haavisto, P., & Neuvo, Y. A. (1990) · Proceedings of the IEEE · doi:10.1109/5.54807 · Cited by 1,141 · see citing works

Primordial germ cells in the mouse embryo during gastrulation

Ginsburg, M., Snow, M. H. L., & McLaren, A. (1990) · Development · doi:10.1242/dev.110.2.521 · Cited by 1,016 · see citing works

Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging

Susaki, E. A., Tainaka, K., Perrin, D., Yukinaga, H., Kuno, A., & Ueda, H. R. (2015) · Nature Protocols · doi:10.1038/nprot.2015.085 · Cited by 821 · see citing works

JAABA: Interactive machine learning for automatic annotation of animal behavior

Kabra, M., Robie, A. A., Rivera-Alba, M., Branson, S., & Branson, K. (2013) · Nature Methods · doi:10.1038/nmeth.2281 · Cited by 644 · see citing works

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

Tomer, R., Khairy, K. A., Amat, F., & Keller, P. (2012) · Nature Methods · doi:10.1038/nmeth.2062 · Cited by 538 · see citing works

Average Brain Models: A Convergence Study

Guimond, A., Meunier, J., & Thirion, J. (2000) · Computer Vision and Image Understanding · doi:10.1006/cviu.1999.0815 · Cited by 431 · see citing works

Primordial Germ Cells in MicePreprint

Saitou, M., & Yamaji, M. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a008375 · Cited by 418 · see citing works

Properties of Gabriel Graphs Relevant to Geographic Variation Research and the Clustering of Points in the Plane

Matula, D. W., & Sokal, R. R. (1980) · Geographical Analysis · doi:10.1111/j.1538-4632.1980.tb00031.x · Cited by 369 · see citing works

Time-Lapse Analysis of Living Mouse Germ Cell Migration

Molyneaux, K. A., Stallock, J., Schaible, K., & Wylie, C. C. (2001) · Developmental Biology · doi:10.1006/dbio.2001.0436 · Cited by 336 · see citing works

Efficient generation of targeted large insertions by microinjection into two-cell-stage mouse embryos

Gu, B., Pósfai, E., & Rossant, J. (2018) · Nature Biotechnology · doi:10.1038/nbt.4166 · Cited by 324 · see citing works

The onset of germ cell migration in the mouse embryo

Anderson, R., Copeland, T. K., Schöler, H. R., et al. (2000) · Mechanisms of Development · doi:10.1016/s0925-4773(99)00271-3 · Cited by 315 · see citing works

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

Amat, F., Lemon, W. C., Mossing, D. P., McDole, K., Wan, Y., Branson, K. M., Myers, E. W., & Keller, P. (2014) · Nature Methods · doi:10.1038/nmeth.3036 · Cited by 293 · see citing works

Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images

Sebastien Ourselin, A., Roche, A., Prima, S., & Ayache, N. (2000) · Lecture notes in computer science · doi:10.1007/978-3-540-40899-4_57 · Cited by 285 · see citing works

Cell fate, morphogenetic movement and population kinetics of embryonic endoderm at the time of germ layer formation in the mouse

Lawson, K. A., Pedersen, R. A., & van de Geer, S. (1987) · Development · doi:10.1242/dev.101.3.627 · Cited by 278 · see citing works

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

Royer, L. A., Lemon, W. C., Chhetri, R. K., Wan, Y., Coleman, M., Myers, E. W., & Keller, P. (2016) · Nature Biotechnology · doi:10.1038/nbt.3708 · Cited by 277 · see citing works

The allocation of epiblast cells to the embryonic heart and other mesodermal lineages: the role of ingression and tissue movement during gastrulation

Tam, P., Parameswaran, M., Kinder, S. J., & Weinberger, R. P. (1997) · Development · doi:10.1242/dev.124.9.1631 · Cited by 274 · see citing works

Establishment of conditional reporter mouse lines at ROSA26 locus for live cell imaging

Abe, T., Kiyonari, H., Shioi, G., Inoue, K., Nakao, K., Aizawa, S., & Fujimori, T. (2011) · genesis · doi:10.1002/dvg.20753 · Cited by 251 · see citing works

Whole-animal functional and developmental imaging with isotropic spatial resolution

Chhetri, R. K., Amat, F., Wan, Y., Höckendorf, B., Lemon, W. C., & Keller, P. (2015) · Nature Methods · doi:10.1038/nmeth.3632 · Cited by 237 · see citing works

Use of the viral 2A peptide for bicistronic expression in transgenic mice

Trichas, G., Begbie, J., & Srinivas, S. (2008) · BMC Biology · doi:10.1186/1741-7007-6-40 · Cited by 236 · see citing works

Inverted light-sheet microscope for imaging mouse pre-implantation development

Strnad, P., Günther, S., Reichmann, J., et al. (2015) · Nature Methods · doi:10.1038/nmeth.3690 · Cited by 207 · see citing works

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

Wolff, C., Tinévez, J.-Y., Pietzsch, T., Stamataki, E., Harich, B., Guignard, L., Preibisch, S., Shorte, S. L., Keller, P., Tomančák, P., et al. (2018) · eLife · doi:10.7554/elife.34410 · Cited by 178 · see citing works

Clonal Analysis of Cell Fate During Gastrulation and Early Neurulation in the Mouse

Lawson, K. A., & Pedersen, R. A. (2007) · Novartis Foundation symposium · doi:10.1002/9780470514221.ch2 · Cited by 177 · see citing works

Establishment and Organization of Germ Layers in the Gastrulating Mouse Embryo

Tam, P., & Beddington, R. S. P. (2007) · Novartis Foundation symposium · doi:10.1002/9780470514221.ch3 · Cited by 150 · see citing works

The Dynamics of Morphogenesis in the Early Mouse EmbryoPreprint

Rivera‐Pérez, J. A., & Hadjantonakis, A. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a015867 · Cited by 132 · see citing works

Essential Role of Sox2 for the Establishment and Maintenance of the Germ Cell Line

Campolo, F., Gori, M., Favaro, R., Nicolis, S., Pellegrini, M., Botti, F., Rossi, P., Jannini, E., & Dolci, S. (2013) · Stem Cells · doi:10.1002/stem.1392 · Cited by 132 · see citing works

Efficient processing and analysis of large-scale light-sheet microscopy data

Amat, F., Höckendorf, B., Wan, Y., et al. (2015) · Nature Protocols · doi:10.1038/nprot.2015.111 · Cited by 131 · see citing works

Origin and role of distal visceral endoderm, a group of cells that determines anterior–posterior polarity of the mouse embryo

Takaoka, K., Yamamoto, M., & Hamada, H. (2011) · Nature Cell Biology · doi:10.1038/ncb2251 · Cited by 127 · see citing works

Automated Mitosis Detection of Stem Cell Populations in Phase-Contrast Microscopy Images

Huh, S., Ker, D. F. E., Bise, R., et al. (2010) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2010.2089384 · Cited by 126 · see citing works

Dynamic in vivo imaging of postimplantation mammalian embryos using whole embryo culture

Jones, E. A. V., Crotty, D. A., Kulesa, P. M., et al. (2002) · genesis · doi:10.1002/gene.10162 · Cited by 123 · see citing works

Noise reduction by vector median filtering

Liu, Y. (2013) · Geophysics · doi:10.1190/geo2012-0232.1 · Cited by 100 · see citing works

Quantitative imaging of cell dynamics in mouse embryos using light-sheet microscopy

Udan, R. S., Piazza, V. G., Hsu, C., Hadjantonakis, A., & Dickinson, M. E. (2014) · Development · doi:10.1242/dev.111021 · Cited by 98 · see citing works

Charting Brachyury-mediated developmental pathways during early mouse embryogenesis

Lolas, M., Valenzuela, P., Tjian, R., & Liu, Z. J. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1402612111 · Cited by 91 · see citing works

Calretinin neurons in human medial prefrontal cortex (areas 24a,b,c, 32?, and 25)

Gabbott, P. L. A., Jays, P. R. L., & Bacon, S. J. (1997) · The Journal of Comparative Neurology · doi:10.1002/(sici)1096-9861(19970519)381:4 · Cited by 81 · see citing works

Fate mapping the mouse embryo

Lawson, K. A. (1999) · The International Journal of Developmental Biology · doi:10.1387/ijdb.10668985 · Cited by 66 · see citing works

Automated pipeline for anatomical phenotyping of mouse embryos using micro-CT

Wong, M. D., Maezawa, Y., Lerch, J. P., & Henkelman, R. M. (2014) · Development · doi:10.1242/dev.107722 · Cited by 62 · see citing works

Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools

Ichikawa, T., Nakazato, K., Keller, P., Kajiura‐Kobayashi, H., Stelzer, E. H. K., Mochizuki, A., & Nonaka, S. (2014) · Nature Protocols · doi:10.1038/nprot.2014.035 · Cited by 43 · see citing works

Generation of knock‐in mice that express nuclear enhanced green fluorescent protein and tamoxifen‐inducible Cre recombinase in the notochord from Foxa2 and T loci

Imuta, Y., Kiyonari, H., Jang, C., et al. (2013) · genesis · doi:10.1002/dvg.22376 · Cited by 38 · see citing works

Ex Utero Culture and Live Imaging of Mouse Embryos

Piliszek, A., Kwon, G. S., & Hadjantonakis, A. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-210-6_9 · Cited by 35 · see citing works

Traffic jam in the primitive streak: The role of defective mesoderm migration in birth defects

Herion, N. J., Salbaum, J. M., & Kappen, C. (2014) · Birth Defects Research Part A Clinical and Molecular Teratology · doi:10.1002/bdra.23283 · Cited by 30 · see citing works

Complexity of the Delaunay Triangulation of Points on Polyhedral Surfaces

Attali, D., & Boissonnat, J. (2003) · Discrete & Computational Geometry · doi:10.1007/s00454-003-2824-x · Cited by 21 · see citing works

SPATIO-TEMPORAL REGISTRATION OF EMBRYO IMAGES

Godin, C., Fiúza, U.-M., Hufnagel, L., Malandain, L. G., Godin, C., Fiúza, U.-M., Lemaire, P., Al, E., Hal, H. I., Guignard, L., et al. (2013) · Cited by 12 · see citing works

3D Haar-like elliptical features for object classification in microscopy

Amat, F., & Keller, P. (2013) · IEEE International Symposium on Biomedical Imaging (ISBI) · doi:10.1109/isbi.2013.6556694 · Cited by 6 · see citing works

Deep learning for cellular image analysis

Moen, E., Bannon, D., Kudo, T., Graf, W., Covert, M., & Van Valen, D. (2019) · Nature Methods · doi:10.1038/s41592-019-0403-1 · Cited by 1,225 · see citing works

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Bunne, C., Roohani, Y., Rosen, Y., Gupta, A., Zhang, X., Roed, M., Alexandrov, T., AlQuraishi, M., Brennan, P., Burkhardt, D. B., et al. (2024) · Cell · doi:10.1016/j.cell.2024.11.015 · Cited by 393 · see citing works

Exploring single cells in space and time during tissue development, homeostasis and regeneration

Mayr, U., Serra, D., & Liberali, P. (2019) · Development · doi:10.1242/dev.176727 · Cited by 63 · see citing works

Using Single-Cell and Spatial Transcriptomes to Understand Stem Cell Lineage Specification During Early Embryo Development

Peng, G., Cui, G., Ke, J., & Jing, N. (2020) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-120219-083220 · Cited by 42 · see citing works

ИСПОЛЬЗОВAНИЕ ПОТЕНЦИAЛA СОЦИAЛЬНЫХ ПAРТНЕРОВ В ПОДГОТОВКЕ БУДУЩИХ ПЕДAГОГОВ

Атабекова, Б. Б. (2024) · Habaršy. Pedagogika ġylymdary seriâsy · doi:10.51889/2959-5762.2023.80.4.019

Cloning and Characterization of Rat BAT3 cDNA

Ozaki, T., Hanaoka, E., Naka, M., et al. (1999) · DNA and Cell Biology · doi:10.1089/104454999315222 · Cited by 22 · see citing works

EFFECT OF THE NEMATODE PHASMARHABDITIS HERMAPHRODITA ON YOUNG STAGES OF THE PEST SLUG ARION LUSITANICUS

Grimm, B. (2002) · Journal of Molluscan Studies · doi:10.1093/mollus/68.1.25 · Cited by 41 · see citing works

HLA-B-associated transcript 3 (Bat3)/Scythe is essential for p300-mediated acetylation of p53Preprint

Sasaki, T., Gan, E. C., Wakeham, A. C., Kornbluth, S. A., Mak, T. W., & Okada, H. (2007) · Genes & Development · doi:10.1101/gad.1534107 · Cited by 127 · see citing works

Anthoxanthum Mosaic Virus

Catherall, P. L. (1970) · Plant Pathology · doi:10.1111/j.1365-3059.1970.tb00999.x · Cited by 6 · see citing works