Cited by 326

The DOI matches its Crossref record; 10 of the 10 references it cites were found in a registry or an index.

An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells

Bowling, Sarah, Sritharan, Duluxan, Osorio, Fernando G., Nguyen, Maximilian, Cheung, Priscilla, Rodriguez-Fraticelli, Alejo, Patel, Sachin, Yuan, Wei-Chien, Fujiwara, Yuko, Li, Bin E., Orkin, Stuart H., Hormoz, Sahand, Camargo, Fernando D.·2020·Cell

Published version of a preprint

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.cell.2020.04.048

Cites

10 of 10 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Research works printed but not linked: 38

  1. Alemany, 2018, Whole-organism clone tracing using single-cell sequencing, Nature, 556, 108, 10.1038/nature25969 · DOI
  2. Aubrey, 2015, An inducible lentiviral guide RNA platform enables the identification of tumor-essential genes and tumor-promoting mutations in vivo, Cell Rep., 10, 1422, 10.1016/j.celrep.2015.02.002 · DOI
  3. Bałakier, 1982, Allocation of cells to inner cell mass and trophectoderm lineages in preimplantation mouse embryos, Dev. Biol., 90, 352, 10.1016/0012-1606(82)90384-0 · DOI
  4. Beard, 2006, Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells, Genesis, 44, 23, 10.1002/gene.20180 · DOI
  5. Buchholz, 1998, Improved properties of FLP recombinase evolved by cycling mutagenesis, Nat. Biotechnol., 16, 657, 10.1038/nbt0798-657 · DOI
  6. Bunge, 2012, Estimating population diversity with CatchAll, Bioinformatics, 28, 1045, 10.1093/bioinformatics/bts075 · DOI
  7. Bunge, 2014, Estimating the number of species in microbial diversity studies, Annu. Rev. Stat. Appl., 1, 427, 10.1146/annurev-statistics-022513-115654 · DOI
  8. Calvanese, 2019, MLLT3 governs human haematopoietic stem-cell self-renewal and engraftment, Nature, 576, 281, 10.1038/s41586-019-1790-2 · DOI
  9. Cermak, 2011, Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting, Nucleic Acids Res., 39, e82, 10.1093/nar/gkr218 · DOI
  10. Chu, 2015, Increasing the efficiency of homology-directed repair for CRISPR-Cas9-induced precise gene editing in mammalian cells, Nat. Biotechnol., 33, 543, 10.1038/nbt.3198 · DOI · Paper page
  11. Colwell, 2012, Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages, J. Plant Ecol., 5, 3, 10.1093/jpe/rtr044 · DOI
  12. Corrado, 2011, The exact distribution of the maximum, minimum and the range of Multinomial/Dirichlet and Multivariate Hypergeometric frequencies, Stat. Comput., 21, 349, 10.1007/s11222-010-9174-3 · DOI
  13. Dzierzak, 2018, Blood Development: Hematopoietic Stem Cell Dependence and Independence, Cell Stem Cell, 22, 639, 10.1016/j.stem.2018.04.015 · DOI
  14. Feng, 2019, Estimation of cell lineage trees by maximum-likelihood phylogenetics, arXiv
  15. Frieda, 2017, Synthetic recording and in situ readout of lineage information in single cells, Nature, 541, 107, 10.1038/nature20777 · DOI · Paper page
  16. Gao, 2018, The hematopoietic stem cell niche: from embryo to adult, Development, 145, dev139691, 10.1242/dev.139691 · DOI · Paper page
  17. Gerrits, 2010, Cellular barcoding tool for clonal analysis in the hematopoietic system, Blood, 115, 2610, 10.1182/blood-2009-06-229757 · DOI
  18. Harrison, 1991, Most primitive hematopoietic stem cells are stimulated to cycle rapidly after treatment with 5-fluorouracil, Blood, 78, 1237, 10.1182/blood.V78.5.1237.1237 · DOI
  19. Houlihan, 2012, Isolation of mouse mesenchymal stem cells on the basis of expression of Sca-1 and PDGFR-α, Nat. Protoc., 7, 2103, 10.1038/nprot.2012.125 · DOI
  20. Kretzschmar, 2012, Lineage tracing, Cell, 148, 33, 10.1016/j.cell.2012.01.002 · DOI
  21. Ledford, 2007, Impaired host defense in mice lacking ONZIN, J. Immunol., 178, 5132, 10.4049/jimmunol.178.8.5132 · DOI
  22. Lu, 2011, Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding, Nat. Biotechnol., 29, 928, 10.1038/nbt.1977 · DOI
  23. Lu, 2019, Clonal-level lineage commitment pathways of hematopoietic stem cells in vivo, Proc. Natl. Acad. Sci. USA, 116, 1447, 10.1073/pnas.1801480116 · DOI
  24. McKenna, 2016, Whole-organism lineage tracing by combinatorial and cumulative genome editing, Science, 353, aaf7907, 10.1126/science.aaf7907 · DOI · Paper page
  25. Orlitsky, 2016, Optimal prediction of the number of unseen species, Proc. Natl. Acad. Sci. USA, 113, 13283, 10.1073/pnas.1607774113 · DOI
  26. Raj, 2018, Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain, Nat. Biotechnol., 36, 442, 10.1038/nbt.4103 · DOI
  27. Rice, 2000, EMBOSS: the European Molecular Biology Open Software Suite, Trends Genet., 16, 276, 10.1016/S0168-9525(00)02024-2 · DOI · Paper page
  28. Rogulski, 2005, Onzin, a c-Myc-repressed target, promotes survival and transformation by modulating the Akt-Mdm2-p53 pathway, Oncogene, 24, 7524, 10.1038/sj.onc.1208897 · DOI
  29. Schepers, 2008, Dissecting T cell lineage relationships by cellular barcoding, J. Exp. Med., 205, 2309, 10.1084/jem.20072462 · DOI
  30. Smith, 2017, UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy, Genome Res., 27, 491, 10.1101/gr.209601.116 · DOI
  31. Snippert, 2010, Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells, Cell, 143, 134, 10.1016/j.cell.2010.09.016 · DOI · Paper page
  32. Spanjaard, 2018, Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars, Nat. Biotechnol., 36, 469, 10.1038/nbt.4124 · DOI · Paper page
  33. Stuart, 2019, Comprehensive integration of single-cell data, Cell, 177, 1888, 10.1016/j.cell.2019.05.031 · DOI · Paper page
  34. Sun, 2014, Clonal dynamics of native haematopoiesis, Nature, 514, 322, 10.1038/nature13824 · DOI · Paper page
  35. Traykova-Brauch, 2008, An efficient and versatile system for acute and chronic modulation of renal tubular function in transgenic mice, Nat. Med., 14, 979, 10.1038/nm.1865 · DOI
  36. Wright, 2001, Physiological migration of hematopoietic stem and progenitor cells, Science, 294, 1933, 10.1126/science.1064081 · DOI · Paper page
  37. Zhang, 2014, PEAR: a fast and accurate Illumina Paired-End reAd mergeR, Bioinformatics, 30, 614, 10.1093/bioinformatics/btt593 · DOI · Paper page
  38. Zilionis, 2017, Single-cell barcoding and sequencing using droplet microfluidics, Nat. Protoc., 12, 44, 10.1038/nprot.2016.154 · DOI

Cited by

See all 326

Metadata

Authors
Bowling, S., Sritharan, D., Osorio, F. G., Nguyen, M., Cheung, P., Rodriguez-Fraticelli, A., Patel, S., Yuan, W.-C., Fujiwara, Y., Li, B. E., Orkin, S. H., Hormoz, S., & Camargo, F. D.
Venue
Cell
Publisher
Elsevier BV
Published
2020-06
Volume
181
Issue
6
Pages
1410-1422.e27
ISSN
0092-8674
Cited by
326
References
10
Language
en
Update notices
erratum (2020-06-25)
Funders
  • Howard Hughes Medical Institute
  • European Molecular Biology Organization
  • Leukemia and Lymphoma Society
  • National Heart, Lung, and Blood Institute
  • Natural Sciences and Engineering Research Council of Canada

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review