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Generation of Functional Human 3D Cortico-Motor Assembloids
Open accessAbstract
SUMMARY Neurons in the cerebral cortex connect through descending pathways to hindbrain and spinal cord to activate muscle and generate movement. Although components of this pathway have been previously generated and studied in vitro, the assembly of this multi-synaptic circuit has not yet been achieved with human cells. Here, we derive organoids resembling the cerebral cortex or the hindbrain/spinal cord and assemble them with human skeletal muscle spheroids to generate 3D cortico-motor assembloids. Using rabies tracing, calcium imaging, and patch-clamp recordings, we show that corticofugal neurons project and connect with spinal spheroids, while spinal-derived motor neurons connect with muscle. Glutamate uncaging or optogenetic stimulation of cortical spheroids triggers robust contraction of 3D muscle, and assembloids are morphologically and functionally intact for up to 10 weeks post-fusion. Together, this system highlights the remarkable self-assembly capacity of 3D cultures to form functional circuits that could be used to understand development and disease.
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TL;DR
The paper generates three-dimensional human cortico-motor assembloids by fusing hiPS cell-derived cortical spheroids, hindbrain/cervical spinal cord spheroids, and skeletal muscle spheroids. It shows that cortical neurons connect to spinal spheroids, spinal motor neurons connect to muscle, and cortical stimulation can drive muscle contraction in vitro for up to 10 weeks.
Key findings
- hSpS resembling hindbrain/cervical spinal cord were generated from hiPS cells; condition 8 (0.1 µM RA, 0.1 µM SAG, 10 ng/mL FGF-2) was selected, and DAPT exposure produced a ~3-fold increase in motor neurons and a 4-fold decrease in an undefined mixed neuronal population. Single-cell profiling included n = 7,888 cells (BD Rhapsody) and n = 9,302 cells across three hiPS cell lines (10x Genomics).
- In hCS-hSpS assembloids, hCS-derived eYFP projections increased over time; rabies tracing showed ~95% of GFP+/mCherry+ hCS cells co-expressed MAP2, <4% GFAP, ~60% CTIP2, and ~12% BRN2. Optogenetic stimulation of hCS elicited calcium spikes in hSpS in 4/10 assembloids, with median response amplitude ~5 times higher than random time points (n = 16 cells, p = 0.0005), blocked by NBQX/APV; patch-clamp found reliable postsynaptic currents in 2/30 recorded Hb9+ cells across 4 assembloids.
- In hSpS-hSkM assembloids, rabies tracing showed 90% of GFP+ cells were CHAT+, <5% GABA+, and ~45% ISL1+; glutamate uncaging caused muscle contraction that was blocked by curare. In hCS-hSpS-hSkM assembloids, spontaneous contractions were ~5× more frequent than hSkM alone or hCS-hSkM, and optogenetic hCS stimulation induced global contractions in 85.7% of tested assembloids and 40% of pulses, abolished by NBQX/APV.
- Assembloids remained morphologically and functionally intact for up to 10 weeks; optogenetic contraction success was 50% at 8 weeks versus 81% at 5 weeks (p = 0.06), while calcium responses after 5 stimulations were more robust at 7–8 weeks (p = 0.003 for Stim 5).
Methods
- Used n = 9 hiPS cell lines from 8 healthy subjects to generate human cortical spheroids (hCS), hindbrain/cervical spinal cord spheroids (hSpS), human skeletal myoblasts (hSkM), and hiPS cell-derived myoblasts (ihSkM); assembled hCS-hSpS, hSpS-hSkM, and hCS-hSpS-hSkM cultures, plus mouse E11.5 limb bud co-cultures.
- Characterized cells and circuits with single-cell transcriptomics (BD Rhapsody and 10x Genomics), qPCR, immunocytochemistry, electron microscopy, rabies tracing, calcium imaging, patch-clamp electrophysiology, optogenetics, glutamate uncaging, and MUSCLEMOTION contraction analysis.
- Statistical comparisons are reported throughout using p-values from the described assays; sample sizes and cell-line/differentiation details are in Table S1 and figure legends.
Limitations
- The paper states that further improvements are needed: more caudal spinal cord cell types, organizing centers or other strategies to improve progenitor domain organization, assessment of ascending projections, and optimization of optogenetics with cell-type-specific reporters.
- The text also notes that direct comparison to human developing hindbrain/spinal cord in the future could better address identity questions; rabies infection of 3D hSkM was challenging, yielding fewer GFP+ cells in some assembloids; and optogenetic success depends on light-pulse duration and opsin delivery efficiency.
- Evident from the reported results: only 4/10 assembloids showed calcium responses in hCS-hSpS, only 2/30 recorded Hb9+ cells showed reliable postsynaptic currents, one hiPS cell line had a higher proportion of V2a neurons at the expense of motor neurons, and the hSpS single-cell analysis did not identify a clear V3 domain or non-ectodermal cells.
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A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we find that human-induced pluripotent stem (hiPS) cell-derived region-specific spheroids form physiologically relevant connections when assembled together”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
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In the paper
“exposure to low levels of RA and high levels of FGF-2 yields more caudal fates (Figure S1D; HOXC9, p = 0.002)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“high SAG exposure is associated with higher expression of ventral marker genes (Figures S1E and S1F; OLIG2, p = 0.001; NKX6–1, p = 0.002; CHX10, p = 0.007; and ISL1, p = 0.01)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“We first generated spheroids resembling the human hindbrain/cervical spinal cord (hSpS) starting from hiPS cells”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“Exposure to high levels of RA and low levels of FGF-2 results in more rostral fates (Figure S1D; HOXA2, p = 0.002)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“assembloids at 8 weeks tended to be more likely to repeatedly contract following five consecutive stimulations (Figures 7M and 7N; p = 0.06)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
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In the paper
“Further quantification showed that ~45% of these cells were also positive for the motor neuron-related transcription factor ISL1 but not for CHX10, PROX1, or FOXP2”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
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In the paper
“Immunocytochemistry of hSkM after co-culture with hSpS revealed binding of bungarotoxin (BTX)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
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In the paper
“We found that neurons in hSpS in 4 out of 10 assembloids responded with calcium spikes that followed the stimulus after ~200 ms”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
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In the paper
“by 12 daf hSpS sent out abundant projections to the 3D hSkM”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
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In the paper
“We found that hCS-hSpS-hSkM can be kept in culture for up to 10 weeks post-assembly (~16–18 weeks from the initiation of hSpS differentiation).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
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In the paper
“We found that consecutive light stimulation to the area surrounding Hb9+ cells could result in reliable post-synaptic currents (Figure 4I; 2 out of 30 recorded cells in 4 assembloids)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
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In the paper
“we found no expression of cholinergic markers CHT1 and VACHT in hCS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
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In the paper
“We found that MN subdivided into at least 6 groups”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“We found that these 3D ihSkM can also be assembled with hSpS and hCS to generate three-part assembloids (Figure S8G) that display contraction following optogenetic stimulation”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIn the paper
“RSS analysis comparing hSpS to different CNS regions in the mouse (Zeisel et al., 2018) showed that hSpS was most closely correlated to hindbrain cell types”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Zeisel et al., 2018 source
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIn the paper
“We verified expression of cortico-spinal-associated markers in hCS, including FEZF2, BCL11B (CTIP2), and SOX5, using single-cell profiling of hCS (Birey et al., 2017) and found a population of cells co-expressing these genes in the glutamatergic neuron cluster but not in a subpallial-derived GABAergic cluster”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
What the sources say
- Not checked yetcites Birey et al., 2017 source
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In the paper
“we found that spontaneous activity in hSpS-hSkM and hCS-hSpS-hSkM assembloids was more coordinated across fields as assessed by analysis of the covariance between subfields in an imaging field”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
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In the paper
“We found that hSpS-hSkM and hCS-hSpS-hSkM assembloids displayed ~5× more spontaneous contractions compared to hSkM alone or hCS-hSkM assembloids”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
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In the paper
“Real-time qPCR for ISL1 and CHX10 showed that out of 16 samples from 5 lines in 4 differentiations, 2 had higher expression of CHX10 compared to ISL1”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:plain· not yet calibratedn = 16Tests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesA result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we added the AMPA and NMDA receptor blockers NBQX (50 µM) and APV (50 µM), which completely abolished light-induced responses”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
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In the paper
“We found that, overall, cluster annotation in hSpS matched previously annotated spinal cord clusters”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we used immunocytochemistry to verify the presence of neuromuscular junctions by labeling Desmin+ myofibers with the pre-synaptic marker synaptophysin and BTX”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
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In the paper
“we found that cell diversity was overall similar (Figures 1G, 1H, and S3B). We also compared expression of all genes across lines and found that they were highly correlated”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“Immunohistochemistry in hCS-hSpS assembloids at 28 daf showed that hCS-derived eYFP processes often project toward ISL1+ cell clusters”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
Strength:plain· not yet calibratedCausal:correlational· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIn the paper
“we found that it broadly matched that described in the literature (Delile et al., 2019) and included glutamatergic (SLC17A6+), GABAergic (GAD1+, GAD2+ or SLC32A1+), glycinergic (SLC6A5+), and cholinergic (SLC5A7+ or SLC18A3+) cells”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Delile et al., 2019 source
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In the paper
“These responses were blocked by application of the ionotropic glutamate receptor blockers NBQX (20 µM) and APV (50 µM)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
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In the paper
“while stimulation of Chrimson-expressing hCS in hCS-hSkM did not trigger a response”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
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In the paper
“We observed extensive projections from the hSpS into the limb bud upon assembly”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passes- Rests on an assumption: Mouse limb buds dissected at embryonic day 11.5 have not yet received spinal cord axonal innervation.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“although the relative proportions of these cell types were not different in hCS at this in vitro stage”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesA result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“One hiPS cell line (8858–1) had a higher proportion of V2a neurons at the expense of motor neurons”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
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In the paper
“We found that the median amplitude of the response was ~5 times higher for real stimulation compared to randomly selected time points (n = 16 cells, p = 0.0005)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
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In the paper
“We placed hSpS on top of hSkM grown in 2D adherent cultures (Figure 5C), and within a week, hSpS projected out to cover muscle cells”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
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In the paper
“Chrimson-triggered EPSCs were blocked by bath application of TTX (1 µM; Tocris, 1069).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
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In the paper
“Specifically, we have generated hSpS that contain a large diversity of spinal neuronal domains and shown they resemble in vivo neuronal populations in mouse.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“Finally, we showed that this three-part assembloid can be maintained functionally and morphologically intact for up to 10 weeks in vitro.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“Here, we leveraged this approach to generate an intact, three-component cortico-motor circuit in which cortical neural activation controls muscle contraction via activation of motor neurons.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“Specifically, we have generated hSpS that contain a large diversity of spinal neuronal domains and shown they resemble in vivo neuronal populations in mouse.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“Moreover, we implemented a series of neuroscience tools and showed that this system can be used for tracing connectivity using a rabies virus, as well as for probing and manipulating neural activity using calcium imaging, glutamate uncaging, and optogenetic stimulation.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“Moreover, we implemented a series of neuroscience tools and showed that this system can be used for tracing connectivity using a rabies virus, as well as for probing and manipulating neural activity using calcium imaging, glutamate uncaging, and optogenetic stimulation.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
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In the paper
“We found four out of ten assembloids to have clear responding cells.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > QUANTIFICATION AND STATISTICAL ANALYSIS
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In the paper
“4/7 cells were able to fire repetitive action potentials.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
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“Damage or degeneration of the cortico-motor circuit following traumatic injury, amyotrophic lateral sclerosis, or autoimmune disorders result in severe motor dysfunction”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
- Not checked yetcites Blesch and Tuszynski, 2009
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In the paper
“We have previously developed an approach to model complex cellular interactions during human brain development by specifying region-specific spheroids or organoids and then fusing them in vitro to generate three-dimensional (3D) assembloids”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
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In the paper
“Corticofugal glutamatergic neurons in the cerebral cortex send long-range axons to modulate networks in the hindbrain and spinal cord to ultimately induce muscle contraction”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesThe paper states this without a source or data behind it here, so there is nothing to check it against. The quote shows it is in the paper.
In the paper
“However, in vitro derivation and assembly of a functional multi-synaptic circuit from human cells have not been achieved.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIn the paper
“This pattern of expression suggests the presence of hindbrain and spinal cord motor neuron progenitor populations in hSpS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Guthrie, 2007 source
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesNone of the sources cited for this claim have been checked yet.
In the paper
“These species-specific differences are further highlighted by challenges in translating findings from animal models”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
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In the paper
“We previously described the generation of 3D spheroids resembling the cerebral cortex (human cortical spheroids [hCS]) (Birey et al., 2017; Paşca et al., 2015; Sloan et al., 2017, 2018), which contain deep and superficial glutamatergic neurons.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
What the sources say
- Not checked yetcites Birey et al., 2017 source
- Not matchedcites Paşca et al., 2015
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Not matchedcites Sloan et al., 2017, 2018
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“suggestive of caudal hindbrain/cervical spinal cord identity”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Together, these data indicate that hCS-hSpS-hSkM assembloids can be maintained in culture for up to 10 weeks without structural disintegration.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Load-bearingStrength:hedged· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIn the paper
“Variation in the state of hiPS cell lines can lead to divergent neuronal biases”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Micali et al., 2020 source
Strength:plain· not yet calibratedCausal:direct· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIn the paper
“Conventional motor neuron and muscle co-cultures are not amenable to long-term experiments, as cells tend to detach over time”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
What the sources say
- Not checked yetcites Thomson et al., 2012
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“indicating glutamatergic transmission from hCS to hSpS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“These responses could be blocked by application of TTX, indicating that they have been triggered by action potentials in axons of hCS neurons by mono- or di-synaptic connections.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Together, these assays indicate that corticofugal neurons in hCS synaptically connect with neurons in hSpS.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesA conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“glutamate uncaging of hCS in hCS-hSkM did not elicit a response (Figures 6I and 6J), showing that muscle contraction upon cortical stimulation is dependent on the presence of the hSpS.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesWhat the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“First, we used human-derived components that are assembled in a self-organizing 3D preparation, and we achieved this reliably using multiple hiPS cells lines.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesNone of the sources cited for this claim have been checked yet.
In the paper
“This represents a significant advance beyond prior models in which individual components of motor circuits have been generated in 3D in isolation or co-cultured in 2D (Duval et al., 2019; Ogura et al., 2018; Sances et al., 2016; Shi et al., 2018; Steinbeck et al., 2016).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
What the sources say
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passes
- It may state two separate claims as one. 46
- The quote only partly states this claim. 2
- Probably not a substantial claim. 24
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“found that ~40% of OLIG2+ cells co-expressed the marker NKX2.2 and ~15% co-expressed NKX6.1”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Spheroids resembling the cerebral cortex form long-range functional connections with spheroids resembling the hindbrain/cervical spinal cord, and these in turn project and connect with human skeletal muscle.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We found that OLIG2 was more highly expressed toward the edge of the hSpS, whereas PAX6 showed the opposite pattern, with higher expression toward the center”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“In condition 8 (hSpS), the neuroectodermal markers SOX1 and PAX6 peaked at day 10, followed by an increase in the expression of OLIG2 and NKX6–1 from day 12”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:plain· not yet calibratedCausal:correlational· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Activity in hSpS-limb assembloids persisted for at least 2 weeks in vitro and was completely blocked by addition of the acetylcholine receptor antagonist curare (100 µM; χ2 test, p = 0.02”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we found that the proportion of active hSkM doubled in hSpS-hSkM in comparison to hSkM in isolation or co-cultured with hCS (hSpS-hSkM versus hSkM p = 0.01; Figures 5E and S6D; Video S2, sequence 2). This effect was observed mainly in hSkM within 1 mm of hSpS (hSkM versus hSpS-hSkM <1 mm, p < 0.0001; Figures S6E and S6F) and was blocked by curare”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We did not find a clear V3 domain with this analysis, and we found no non-ectodermal cells, however, we identified a group of neural cells that we could not define based on known marker genes.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We found that hSkM contracted after light stimulation at both time points, although the success rate for contracting assembloids at 8 weeks tended to be decreased (50% versus 81% success rate at 8 and 5 weeks, respectively; p = 0.06”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Quantification of the eYFP+-covered area in hSpS in intact hCS-hSpS assembloids showed a progressive increase of eYFP over time (5 daf versus 10 daf p = 0.009; 5 daf versus 20 daf p < 0.0001; Figures 3D, S5F, and S5G for examples of hCS-hSpS assembloids at 20 daf), and this was not observed to the same extent in hCS-hCS assembloids”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we examined the expression of HOX genes in hSpS and found expression of HOXB4, HOXC4, and HOXB5”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We found that ~95% of the GFP+/mCherry+ cells in hCS co-expressed the neuronal marker MAP2 and fewer than 4% expressed the glial lineage marker GFAP”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“This resulted in robust muscle contraction (p = 0.002) (Figures 6F–6H) suggesting functional assembly of a cortico-spinal-muscle functional unit. The contraction was blocked by treatment with 100 µm curare (Figures 6G, S7D, and S7E) and was not related to UV exposure”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“limb buds displayed spontaneous contractions when assembled with hSpS, but not when kept in isolation or when assembled with hCS (χ2 test, p = 0.02”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
- Rests on an assumption: Mouse limb buds dissected at embryonic day 11.5 have not yet received spinal cord axonal innervation.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We also confirmed the presence of cholinergic motor neurons in hSpS by immunocytochemistry for the enzyme that catalyzes the biosynthesis of the neurotransmitter acetylcholine (CHAT), the vesicular acetylcholine transporter VACHT, the neurofilament SMI-32, and the transcription factors HB9, ISL1, and PHOX2B”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We found that almost 60% of all GFP+/mCherry+ cells co-expressed the corticofugal marker CTIP2, and only ~12% co-expressed BRN2”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Live imaging at 5 days after fusion (daf) showed processes derived from cells in the hCS extending into hSpS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one. The quote only partly states this claim.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“hSpS cells sometimes projected into hCS but seldom migrated (Figure S5J). Similarly, we did not observe hSpS-derived Hb9 cells migrating into hCS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Cortico-Spinal Assembloids
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“hSpS cell cluster identity and found they included progenitors expressing SOX9 and TOP2A, astroglia, and several neuronal domains including a dorsal group of cells expressing LHX2, INSM1, ST18, and TLX3”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one. The quote only partly states this claim.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We also observed the presence of ventral neuronal domains in hSpS by immunohistochemistry at day 45 (Figures 2E, 2F, and S4G), as well as the presence of astrocytes and oligodendrocytes at day 75”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We observed extensive expression of GFP in hSpS and cells co-expressing GFP and mCherry in hCS”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we found no significant difference in the number of contractions or the covariance between hSpS-hSkM and hCS-hSpS-hSkM (p = >0.99)”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“we used immunohistochemistry in hCS-hSpS-hSkM assembloids at 10 weeks (Figure 7G) and found the presence of hCS-derived projections into hSpS (Figures 7H and S7U), motor neurons (Figure 7I, S7U, and S7V), non-reactive astrocytes (Figures 7H and S7V), myelinating oligodendrocytes (Figures 7H and 7I) and neuromuscular junctions”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Activation of Chrimson-expressing hCS induced global contractions in hSkM in 85.7% of tested assembloids (p = 0.01) (Figures 6L and 6M; Video S5, sequence 1) and 40% of pulses”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“We found that assembloids at this time present intact axons and dendrites (Figure S7N), mature synapses (Figures 7B, 7C, S7O, and S7P), organized skeletal muscle fibers (Figures 7D and S7Q), and neuromuscular contacts”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“When differentiated in the presence of DAPT, although overall similar to the unexposed condition (hSpS(–)DAPT; R2 = 0.85, p < 0.0001), hSpS contained a ~3-fold increase in the proportion of motor neurons as well as a 4-fold decrease in the proportion of an undefined mixed neuronal population”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Activation of Chrim-expressing hCS induced calcium spikes in hSkM fibers (Figures 6Q and 6R; Video S5, sequence 2), and these were dependent on the presence of Chrimson”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Applications in Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Photostimulation of hSpS in hSpS-hSkM assembloids resulted in robust hSkM contraction in the presence, but not in the absence, of MNI-caged glutamate (Figures 5M, 5N, S6O, and S6P; Video S3), and addition of curare stopped hSkM contractions”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Differentiated myotubes expressed markers of mature skeletal muscle, such as desmin (DES), titin (TTN), and the heavy chain myosin (MyHC), and became multinucleated”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Light-induced hCS activity elicited calcium spikes in hSkM at both 4–5 and 7–8 weeks, but although hSkM fibers in assembloids respond to the first stimulation at both ages, only at the later time point cells are able to maintain a robust response after 5 stimulations”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Gene expression profiles of 4,175 and 3,173 cells were recovered for hSpS with or without DAPT, respectively, with an average number of reads of ~17,000, ~2,400 molecules and ~1,400 number of genes detected per cell with average molecular index coverage (that is, the number of times a molecule was sequenced) of 4.8.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
A result the paper reports from its own data — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Third, we showed the generation, from three components, of a functional human neural circuit that contains at least two synaptic contacts.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
Load-bearingStrength:boosted· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“Specification of the progenitor domains in the hindbrain and spinal cord relies on signaling molecules like WNT and retinoic acid (RA) secreted along the rostro-caudal axis, and sonic hedgehog (SHH) along the dorso-ventral axis”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesProbably not a substantial claim.
None of the sources cited for this claim have been checked yet.
In the paper
“Recent evidence points at primate-specific reorganization and connectivity of the cortico-spinal pathway, including the presence of direct monosynaptic cortico-spinal connections, which may be related to corticalization of motor control and the evolution of dexterity”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“Long-range neural projections have been observed in a cortico-thalamic assembloid (Xiang et al., 2019), in organotypic mouse co-cultures (Takuma et al., 2002) and in a preparation that used sliced cortical organoids and rodent spinal cord explants (Giandomenico et al., 2019).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“Although components of the cortico-spinal-motor pathway have been generated or studied in isolation (Ogura et al., 2018; Sances et al., 2016; Shi et al., 2018; Steinbeck et al., 2016), the in vitro derivation and assembly of this three-part system have not yet been achieved with human cells.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
What the sources say
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“these cortico-motor assembloids can be used to trace anatomical and functional connectivity, can be maintained long term in vitro to capture cellular and functional changes, and can be manipulated optogenetically or pharmacologically at multiple levels to control human muscle contraction.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > INTRODUCTION
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
In the paper
“Whereas spinal cord progenitors are organized in a well-defined laminar pattern during development, post-mitotic neurons in the spinal cord do not appear to maintain this organization at later stages”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Lai et al., 2016 source
Strength:hedged· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Most of these cells expressed the motor neuron marker PHOX2B, but did not express the visceral motor neuron marker TBX20, suggesting motor neurons in hSpS have a largely somatic identity”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:hedged· not yet calibratedCausal:correlational· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“The balance between V2a interneurons and motor neurons is known to be linked (Thaler et al., 1999), and loss of motor neurons in Olig1/2 knockout mice results in a dramatic increase of Chx10+ V2a interneurons”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
What the sources say
- Not checked yetcites Thaler et al., 1999 source
- Not checked yetcites Zhou and Anderson, 2002
Strength:boosted· not yet calibratedCausal:direct· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“MN cluster 6 was negative for PHOX2B and positive for ISL1/2 and HB9 (MNX1), indicating a limb-innervating lateral motor column-like identity”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:hedged· not yet calibratedCausal:correlational· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
The paper states this without a source or data behind it here, so there is nothing to check it against. The quote shows it is in the paper.
In the paper
“The functional output of the cortico-motor circuit is muscle contraction through motor neuron activity.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Functional Assembly of Spinal Spheroids with Muscle
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesProbably not a substantial claim.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Some dorsal clusters appeared to be less correlated compared to ventral clusters, which may be explained by the lack of dorsalizing signals in hSpS.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Generation of Hindbrain/Cervical Spinal Cord Spheroids from Pluripotent Stem Cells
Strength:hedged· not yet calibratedCausal:conditional· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes? Load-bearing: unclear✓ Based: passesIt may state two separate claims as one.
In the paper
“Corticofugal projection neurons, which include cortico-spinal projecting cells, express CTIP2 and are mainly located in deep layers of the cerebral cortex, whereas neurons located in superficial layers express BRN2 and project to the contra-lateral cortex”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Viral Tracing, Optogenetics, and Calcium Imaging in Cortico-Spinal Assembloids
What the sources say
- Not checked yetcites Greig et al., 2013 source
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Cells with mitochondrial gene (with a gene symbol starting with MT) content > 30%, were discarded, retaining a total of 7,888 cells from both samples.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedCausal:direct· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Processed gene expression data are available in the Gene Expression Omnibus under accession number GEO: GSE123722.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > RESOURCE AVAILABILITY
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“We excluded cells with more than 6,000 or less than 1,000 detected genes, as well as those with a mitochondrial content higher than 18%.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Cultures were tested and maintained mycoplasma free.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > EXPERIMENTAL MODEL AND SUBJECT DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Experiments in this manuscript were performed with stimulations of 68–100 ms for increased sampling speed and to avoid any light-induced toxicity, yet longer stimulations may yield higher success rates.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:hedged· not yet calibratedCausal:conditional· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✗ Based: failsProbably not a substantial claim. The paper’s conclusions may not depend on it. The paper may give no reason why it holds.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Widespread infection of 3D hSkM with rabies-∆G-Cre-eGFP and AAV-8-CAG-FLEX-Rabies G was challenging, which resulted in some assembloids having fewer GFP cells for quantification.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedCausal:direct· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Approval for mouse experiments was obtained from the Stanford University’s Administrative Panel on Laboratory Animal Care (APLAC).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“A total number of 798 (hSkM condition), 652 (hCS + hSkM condition), 1006 (hSpS + hSkM condition) and 727 (hSpS + hSkM + curare condition) hSkM fibers were analyzed.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > QUANTIFICATION AND STATISTICAL ANALYSIS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“the proportion of live cells was estimated using a fluorescent assay (~90%) and all cells were used for further processing.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:hedged· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
In the paper
“We previously showed the potential of using region-specific spheroids as a modular approach to study human interneuron migration and identify disease phenotypes (Birey et al., 2017).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > DISCUSSION
What the sources say
- Not checked yetcites Birey et al., 2017 source
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesProbably not a substantial claim.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Approval for using these lines was obtained from the Stanford IRB panel and informed consent was obtained from all subjects.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > EXPERIMENTAL MODEL AND SUBJECT DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it. It may state two separate claims as one.
None of the sources cited for this claim have been checked yet.
In the paper
“The hiPS cell lines used in this study were validated using standard methods as previously described (Paşca et al., 2011; Sloan et al., 2018).”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > EXPERIMENTAL MODEL AND SUBJECT DETAILS
What the sources say
- Not checked yetcites Paşca et al., 2011
- Not checked yetcites Sloan et al., 2018 source
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesProbably not a substantial claim.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Taken together, these results demonstrate that the assembly of intact 3D human cultures resembling the cerebral cortex, hindbrain/spinal cord and skeletal muscle enables the formation of neural circuits that can be readily manipulated over several weeks in vitro to model cortical control of muscle contraction.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > RESULTS > Long-Term Culture and Functionality of Cortico-Motor Assembloids
Tests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesIt may state two separate claims as one.
A conclusion the paper draws from its own results — it cites no other source for it, so there is none to check. The quote shows it is in the paper.
In the paper
“Moreover, because low opsin expression may result in reduced stimulation success, inspection of hCS AAV-1-hSYN1-ChrimsonR-tdT expression before assembly is recommended.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:hedged· not yet calibratedCausal:conditional· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Human brain specimens were obtained under a protocol approved by the Research Compliance Office at Stanford University.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > EXPERIMENTAL MODEL AND SUBJECT DETAILS
Load-bearingStrength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✓ Load-bearing: passes✓ Based: passesProbably not a substantial claim.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“We note that optogenetic stimulation experiments depend on at least two factors: (i) the duration of light pulses, and (ii) the efficiency of opsin delivery.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedCausal:conditional· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Validation of hiPS genome integrity was performed by high density SNP arrays.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedSingle caseTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Only assembloids with at least 10 GFP+ cells were included in the analysis.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“We excluded genes that were not expressed in at least three cells.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
What the paper did — it cites no source for this, so there is none to check. The quote shows it is in the paper.
In the paper
“Due to sex differences between hiPS cell lines we also removed all genes on the X and Y chromosomes from the count matrix.”
§ Generation of Functional Human 3D Cortico-Motor Assembloids > STAR★METHODS > METHOD DETAILS
Strength:plain· not yet calibratedCausal:direct· not yet calibratedTests✓ Asserted: passes✓ Checkable: passes✗ Load-bearing: fails✓ Based: passesProbably not a substantial claim. The paper’s conclusions may not depend on it.
The paper relies on this without support.
Mouse limb buds dissected at embryonic day 11.5 have not yet received spinal cord axonal innervation.
“we dissected mouse limb buds at embryonic day 11.5 (E11.5) before spinal cord axonal innervation”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“Variants of ECM combinations, micropatterned 2D mono-culture or co-culture237,238, cell sheets239, stacked 3D structures26, and micro-positioned ECM substrates70,240 allow the formation of reproducible tissue structures and functions with a high degree of spatiotemporal control such as stretching241 and osmotic forces242 (FIG. 5).”
From Organoids (2022) · cites this paper as [237]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Single-cell totals do not add up
MajorThe two reported recovered-cell counts sum to 7,348, not 7,888. The stated total is also described as remaining after filtering, which cannot increase the count.
Reported 7888 · recomputed 7348
“Gene expression profiles of 4,175 and 3,173 cells were recovered for hSpS with or without DAPT, respectively”
Citations
Cites
Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
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Comprehensive Integration of Single-Cell Data
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Integrating single-cell transcriptomic data across different conditions, technologies, and species
Butler, A., Hoffman, P., Smibert, P., Papalexi, E., & Satija, R. (2018) · Nature Biotechnology · doi:10.1038/nbt.4096 · Cited by 13,174
Meijer, L., Nelson, D. J., Riazanski, V., Gabdoulkhakova, A. G., Héry-Arnaud, G., Berre, R. L., Loaëc, N., Oumata, N., Galons, H., Nowak, E., et al. (2016) · Journal of Innate Immunity · doi:10.1159/000444256 · Cited by 5,008
Molecular Architecture of the Mouse Nervous System
Zeisel, A., Hochgerner, H., Lönnerberg, P., Johnsson, A., Memic, F., van der Zwan, J., Häring, M., Braun, E., Borm, L. E., La Manno, G., et al. (2018) · Cell · doi:10.1016/j.cell.2018.06.021 · Cited by 2,552
Independent optical excitation of distinct neural populations
Klapoetke, N. C., Murata, Y., Kim, S. S., Pulver, S. R., Birdsey-Benson, A., Cho, Y. K., Morimoto, T. K., Chuong, A. S., Carpenter, E. J., Tian, Z., et al. (2014) · Nature Methods · doi:10.1038/nmeth.2836 · Cited by 2,344
Neuronal specification in the spinal cord: inductive signals and transcriptional codes
Jessell, T. M. (2000) · Nature Reviews Genetics · doi:10.1038/35049541 · Cited by 2,089
Directed differentiation of embryonic stem cells into motor neurons.
Wichterle, H., Lieberam, I., Porter, J. A., & Jessell, T. (2002) · Cell · doi:10.1016/s0092-8674(02)00835-8 · Cited by 1,792
Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture
Paşca, A. M., Sloan, S. A., Clarke, L. E., Tian, Y., Makinson, C. D., Huber, N., Kim, C. H., Park, J.-Y., O'Rourke, N. A., Nguyen, K. D., et al. (2015) · Nature Methods · doi:10.1038/nmeth.3415 · Cited by 1,609
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Zhao, Z., Chen, X., Dowbaj, A. M., Sljukic, A., Bratlie, K., Lin, L., Fong, E. L. S., Balachander, G. M., Chen, Z., Soragni, A., et al. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00174-y · Cited by 1,082
Self-citationHuman organoids in basic research and clinical applications
Tang, X.-Y., Wu, S., Wang, D., Chu, C., Hong, Y., Tao, M., Hu, H., Xu, M., Guo, X. L., & Liu, Y. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-01024-9 · Cited by 539
Induced pluripotent stem cells (iPSCs): molecular mechanisms of induction and applications
Cerneckis, J., Cai, H., & Shi, Y. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01809-0 · Cited by 452
Scaffolding Biomaterials for 3D Cultivated Meat: Prospects and Challenges
Bomkamp, C., Skaalure, S. C., Fernando, G. F., Arye, T. B., Swartz, E. W., & Specht, E. A. (2021) · Advanced Science · doi:10.1002/advs.202102908 · Cited by 366
Human cerebral organoids — a new tool for clinical neurology research
Eichmüller, O. L., & Knoblich, J. A. (2022) · Nature Reviews Neurology · doi:10.1038/s41582-022-00723-9 · Cited by 319
Metadata
- Authors
- Andersen, J., Revah, O., Miura, Y., Thom, N., Amin, N. D., Kelley, K. W., Singh, M., Chen, X., Thete, M. V., Walczak, E. M., Vogel, H., Fan, H. C., & Paşca, S. P.
- Affiliations
- Stanford Medicine (US)
- BD Biosciences (United States) (US)
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2020-12
- Volume
- 183
- Issue
- 7
- Pages
- 1913-1929.e26
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC8711252
- OpenAlex
- W3111725926
- Semantic Scholar
- efd4826167926999032fda07b3500f99ab4d42ee
- Cited by
- 593
- References
- 75
- Citations by year
- 2026: 96 · 2025: 127 · 2024: 123 · 2023: 80 · 2022: 88 · 2021: 79
- FWCI
- 20.02
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- New York Stem Cell Foundation
- Chan Zuckerberg Initiative
- National Institutes of Health
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neural Engineering
- Keywords
- spinal cord organoids, hindbrain, corticofugal neurons, motor neurons, muscle contraction, glutamate uncaging, optogenetic stimulation, calcium imaging, patch-clamp recording
- MeSH terms
- Animals, Calcium, Cell Differentiation, Cells, Cultured, Cerebral Cortex, Cervical Vertebrae, Gene Expression Regulation, Glutamates, Humans, Motor Cortex, Muscles, Nerve Net, Organoids, Rhombencephalon, Spinal Cord, Spheroids, Cellular, Myoblasts, Mice, Induced Pluripotent Stem Cells, Optogenetics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
A language model drew the claims from the paper on 2026-10-07, under version 3 of the claim definition (model deepseek-v4.1-flash, prompt extract-v3).
A second model labelled each claim on 2026-10-07 (model jev-1.13-20260917, definition revision gold-guideline-v0.2).
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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