hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids
Open accessAbstract
Human brain organoid techniques have rapidly advanced to facilitate investigating human brain development and diseases. These efforts have largely focused on generating telencephalon due to its direct relevance in a variety of forebrain disorders. Despite its importance as a relay hub between cortex and peripheral tissues, the investigation of three-dimensional (3D) organoid models for the human thalamus has not been explored. Here, we describe a method to differentiate human embryonic stem cells (hESCs) to thalamic organoids (hThOs) that specifically recapitulate the development of thalamus. Single-cell RNA sequencing revealed a formation of distinct thalamic lineages, which diverge from telencephalic fate. Importantly, we developed a 3D system to create the reciprocal projections between thalamus and cortex by fusing the two distinct region-specific organoids representing the developing thalamus or cortex. Our study provides a platform for understanding human thalamic development and modeling circuit organizations and related disorders in the brain.
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Long-range neural projections have been observed in cortico-thalamic assembloids, organotypic mouse co-cultures, and sliced cortical organoids with rodent spinal cord explants.
“Long-range neural projections have been observed in a cortico-thalamic assembloid (Xiang et al., 2019), in organotypic mouse co-cultures (Takuma et al., 2002) and in a preparation that used sliced cortical organoids and rodent spinal cord explants (Giandomenico et al., 2019).”
From Generation of Functional Human 3D Cortico-Motor Assembloids (2020) · cites this paper as Xiang et al., 2019
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Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890 · see citing works
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625 · see citing works
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets.
Macosko, E. Z., Basu, A., Satija, R., Nemesh, J., Shekhar, K., Goldman, M., Tirosh, I., Bialas, A. R., Kamitaki, N., Martersteck, E. M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.05.002 · Cited by 7,110 · see citing works
Cerebral organoids model human brain development and microcephaly
Lancaster, M. A., Renner, M., Martin, C.-A., Wenzel, D., Bicknell, L. S., Hurles, M. E., Homfray, T., Penninger, J. M., Jackson, A. P., & Knoblich, J. A. (2013) · Nature · doi:10.1038/nature12517 · Cited by 5,372 · see citing works
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
Chambers, S. M., Fasano, C. A., Papapetrou, E. P., Tomishima, M., Sadelain, M., & Studer, L. (2009) · Nature Biotechnology · doi:10.1038/nbt.1529 · Cited by 3,620 · see citing works
Thalamocortical oscillations in the sleeping and aroused brain
Steriade, M., McCormick, D. A., & Sejnowski, T. J. (1993) · Science · doi:10.1126/science.8235588 · Cited by 3,564 · see citing works
Modeling Development and Disease with Organoids
Clevers, H. (2016) · Cell · doi:10.1016/j.cell.2016.05.082 · Cited by 3,196 · see citing works
Organogenesis in a dish: Modeling development and disease using organoid technologies
Lancaster, M. A., & Knoblich, J. A. (2014) · Science · doi:10.1126/science.1247125 · Cited by 2,931 · see citing works
Piñero, J., Bravo, À., Queralt-Rosinach, N., Gutiérrez-Sacristán, A., Deu-Pons, J., Centeno, E., García-García, J., Sanz, F., & Furlong, L. I. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw943 · Cited by 2,680 · see citing works
Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure
Qian, X., Nguyen, H. N., Song, M. M., Hadiono, C., Ogden, S. C., Hammack, C., Yao, B., Hamersky, G. R., Jacob, F., Zhong, C., et al. (2016) · Cell · doi:10.1016/j.cell.2016.04.032 · Cited by 2,127 · see citing works
Using GOstats to test gene lists for GO term association
Falcon, S., & Gentleman, R. C. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl567 · Cited by 2,019 · see citing works
Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture
Paşca, A. M., Sloan, S. A., Clarke, L. E., Tian, Y., Makinson, C. D., Huber, N., Kim, C. H., Park, J.-Y., O'Rourke, N. A., Nguyen, K. D., et al. (2015) · Nature Methods · doi:10.1038/nmeth.3415 · Cited by 1,609 · see citing works
A survey of human brain transcriptome diversity at the single cell level
Darmanis, S., Sloan, S. A., Zhang, Y., Enge, M., Caneda, C., Shuer, L. M., Hayden Gephart, M. G., Barres, B. A., & Quake, S. R. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1507125112 · Cited by 1,401 · see citing works
Assembly of functionally integrated human forebrain spheroids
Birey, F., Andersen, J., Makinson, C. D., Islam, S., Wei, W., Huber, N., Fan, H. C., Metzler, K. R. C., Panagiotakos, G., Thom, N., et al. (2017) · Nature · doi:10.1038/nature22330 · Cited by 1,365 · see citing works
Jo, J., Xiao, Y., Sun, A. X., Cukuroglu, E., Tran, H.-D., Göke, J., Tan, Z. Y., Saw, T. Y., Tan, C.-P., Lokman, H., et al. (2016) · Cell Stem Cell · doi:10.1016/j.stem.2016.07.005 · Cited by 861 · see citing works
Fused cerebral organoids model interactions between brain regions
Bagley, J. A., Reumann, D., Bian, S., Lévi-Strauss, J., & Knoblich, J. A. (2017) · Nature Methods · doi:10.1038/nmeth.4304 · Cited by 790 · see citing works
Functional organization of thalamocortical relays
Sherman, S. M., & Guillery, R. W. (1996) · Journal of Neurophysiology · doi:10.1152/jn.1996.76.3.1367 · Cited by 762 · see citing works
Cognition in schizophrenia: core psychological and neural mechanisms
Barch, D. M., & Ceaser, A. E. (2011) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2011.11.015 · Cited by 752 · see citing works
Xiang, Y., Tanaka, Y., Patterson, B., Kang, Y., Govindaiah, G., Roselaar, N., Çakır, B., Kim, K.-Y., Lombroso, A., Hwang, S., et al. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.07.007 · Cited by 696 · see citing works
Self-citationSelf-Organization of Polarized Cerebellar Tissue in 3D Culture of Human Pluripotent Stem Cells
Muguruma, K., Nishiyama, A., Kawakami, H., Hashimoto, K., & Sasai, Y. (2015) · Cell Reports · doi:10.1016/j.celrep.2014.12.051 · Cited by 692 · see citing works
Childhood absence epilepsy: Genes, channels, neurons and networks
Crunelli, V., & Leresche, N. (2002) · Nature reviews. Neuroscience · doi:10.1038/nrn811 · Cited by 664 · see citing works
Diffusion maps for high-dimensional single-cell analysis of differentiation data
Haghverdi, L., Buettner, F., & Theis, F. J. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv325 · Cited by 649 · see citing works
Sakaguchi, H., Kadoshima, T., Soen, M., Narii, N., Ishida, Y., Ohgushi, M., Takahashi, J., Eiraku, M., & Sasai, Y. (2015) · Nature Communications · doi:10.1038/ncomms9896 · Cited by 542 · see citing works
The rise of three-dimensional human brain cultures
Pașca, S. P. (2018) · Nature · doi:10.1038/nature25032 · Cited by 509 · see citing works
Thalamocortical development: how are we going to get there?
López‐Bendito, G., & Molnár, Z. (2003) · Nature reviews. Neuroscience · doi:10.1038/nrn1075 · Cited by 447 · see citing works
Non-epithelial stem cells and cortical interneuron production in the human ganglionic eminences
Hansen, D. V., Lui, J. H., Flandin, P., Yoshikawa, K., Rubenstein, J. L., Alvarez-Buylla, A., & Kriegstein, A. R. (2013) · Nature Neuroscience · doi:10.1038/nn.3541 · Cited by 328 · see citing works
Subcortical origins of human and monkey neocortical interneurons
Ma, T., Wang, C., Wang, L., Zhou, X., Tian, M., Zhang, Q., Zhang, Y., Li, J., Liu, Z., Cai, Y., et al. (2013) · Nature Neuroscience · doi:10.1038/nn.3536 · Cited by 322 · see citing works
Primary Cilia in the Developing and Mature Brain
Guemez-Gamboa, A., Coufal, N. G., & Gleeson, J. G. (2014) · Neuron · doi:10.1016/j.neuron.2014.04.024 · Cited by 296 · cited 1× · see citing works
“The CBC showed a high expression of genes involved in cilium development, which is essential for brain development and function (Guemez-Gamboa et al., 2014).”
BackgroundMinimization of exogenous signals in ES cell culture induces rostral hypothalamic differentiation
Wataya, T., Ando, S., Muguruma, K., Ikeda, H. O., Watanabe, K., Eiraku, M., Kawada, M., Takahashi, J. B., Hashimoto, N., & Sasai, Y. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0803078105 · Cited by 269 · see citing works
Vesicular Glutamate Transporter VGLUT2 Expression Levels Control Quantal Size and Neuropathic Pain
Moechars, D., Weston, M. C., Leo, S., Callaerts‐Vegh, Z., Goris, I., Daneels, G., Buist, A., Cik, M., van der Spek, P. J., Kass, S. U., et al. (2006) · Journal of Neuroscience · doi:10.1523/jneurosci.2556-06.2006 · Cited by 226 · see citing works
The Role of the Thalamus in Schizophrenia
Andreasen, N. C. (1997) · The Canadian Journal of Psychiatry · doi:10.1177/070674379704200104 · Cited by 217 · see citing works
Neural Connections Between the Lateral Geniculate Nucleus and Visual Cortex in Vitro
Yamamoto, N., Kurotani, T., & Toyama, K. (1989) · Science · doi:10.1126/science.2749258 · Cited by 195 · see citing works
In vivo reprogramming of circuit connectivity in postmitotic neocortical neurons
la Rossa, A. D., Bellone, C., Golding, B., Vitali, I., Moss, J., Toni, N., Lüscher, C., & Jabaudon, D. (2013) · Nature Neuroscience · doi:10.1038/nn.3299 · Cited by 188 · see citing works
Morphological alterations in the thalamus, striatum, and pallidum in autism spectrum disorder
Schuetze, M., Park, M. T. M., Cho, I. Y., MacMaster, F. P., Chakravarty, M. M., & Bray, S. L. (2016) · Neuropsychopharmacology · doi:10.1038/npp.2016.64 · Cited by 186 · see citing works
Laminar specificity of extrinsic cortical connections studied in coculture preparations
Yamamoto, N., Yamada, K., Kurotani, T., & Toyama, K. (1992) · Neuron · doi:10.1016/0896-6273(92)90161-6 · Cited by 177 · see citing works
Ontogeny-recapitulating generation and tissue integration of ES cell–derived Purkinje cells
Muguruma, K., Nishiyama, A., Ono, Y., Miyawaki, H., Mizuhara, E., Hori, S., Kakizuka, A., Obata, K., Yanagawa, Y., Hirano, T., et al. (2010) · Nature Neuroscience · doi:10.1038/nn.2638 · Cited by 162 · see citing works
ER Proteostasis Control of Neuronal Physiology and Synaptic Function
Martínez, G., Khatiwada, S., Costa‐Mattioli, M., & Hetz, C. A. (2018) · Trends in Neurosciences · doi:10.1016/j.tins.2018.05.009 · Cited by 132 · see citing works
Building a bridal chamber: development of the thalamus
Scholpp, S., & Lumsden, A. (2010) · Trends in Neurosciences · doi:10.1016/j.tins.2010.05.003 · Cited by 118 · see citing works
Thalamocortical connectivity in major depressive disorder
Brown, E. C., Clark, D., Hassel, S., MacQUEEN, G. M., & Ramasubbu, R. (2017) · Journal of Affective Disorders · doi:10.1016/j.jad.2017.04.004 · Cited by 115 · see citing works
Hao, C., Freeman, C. G., Jacobson, G. A., & Small, D. H. (2013) · IUBMB Life · doi:10.1002/iub.1118 · Cited by 89 · see citing works
Specificity and Plasticity of Thalamocortical Connections in Sema6A Mutant Mice
Little, G. E., López‐Bendito, G., Rünker, A. E., et al. (2009) · PLoS Biology · doi:10.1371/journal.pbio.1000098 · Cited by 73 · see citing works
Kalish, B. T., Cheadle, L., Hrvatin, S., Nagy, M. A., Rivera, S. A., Crow, M., Gillis, J. A., Kirchner, R. D., & Greenberg, M. E. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1717871115 · Cited by 68 · see citing works
Dynamic spatiotemporal gene expression in embryonic mouse thalamus
Suzuki‐Hirano, A., Ogawa, M., Kataoka, A., Yoshida, A., Itoh, D., Ueno, M., Blackshaw, S., & Shimogori, T. (2010) · The Journal of Comparative Neurology · doi:10.1002/cne.22531 · Cited by 66 · see citing works
Molecular anatomy of the thalamic complex and the underlying transcription factors
Nagalski, A., Puelles, L., Dąbrowski, M., Węgierski, T., Kuźnicki, J., & Wisniewska, M. B. (2015) · Brain Structure and Function · doi:10.1007/s00429-015-1052-5 · Cited by 64 · see citing works
Harsan, L. A., Dávid, C., Reisert, M., Schnell, S., Hennig, J., von Elverfeldt, D., & Staiger, J. F. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1218330110 · Cited by 55 · see citing works
Generation of thalamic neurons from mouse embryonic stem cells
Shiraishi, A., Muguruma, K., & Sasai, Y. (2017) · Development · doi:10.1242/dev.144071 · Cited by 55 · see citing works
Molecular Regionalization of the Developing Neural Tube
Martı́nez, S., Puelles, E., Puelles, L., & Echevarrı́a, D. (2011) · Elsevier eBooks · doi:10.1016/b978-0-12-369497-3.10001-9 · Cited by 40 · see citing works
Enríquez-Barreto, L., Palazzetti, C., Brennaman, L. H., et al. (2012) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2012.00076 · Cited by 29 · see citing works
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Andersen, J., Revah, O., Miura, Y., Thom, N., Amin, N. D., Kelley, K. W., Singh, M., Chen, X., Thete, M. V., Walczak, E. M., et al. (2020) · Cell · doi:10.1016/j.cell.2020.11.017 · Cited by 593 · see citing works
Cho, A.-N., Jin, Y., An, Y., Kim, J., Choi, Y. S., Lee, J. S., Kim, J., Choi, W.-Y., Koo, D.-J., Yu, W., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-24775-5 · Cited by 397 · see citing works
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Sharma, A., Sances, S., Workman, M. J., & Svendsen, C. N. (2020) · Cell Stem Cell · doi:10.1016/j.stem.2020.02.011 · Cited by 296 · see citing works
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Fleck, J. S., Sanchís-Calleja, F., He, Z., Santel, M., Boyle, M. J., Camp, J. G., & Treutlein, B. (2021) · Cell Stem Cell · doi:10.1016/j.stem.2021.02.015 · Cited by 118 · see citing works
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Harrison, S. P., Siller, R., Tanaka, Y., Chollet, M. E., de la Morena-Barrio, M. E., Xiang, Y., Patterson, B., Andersen, E., Bravo-Pérez, C., Kempf, H., et al. (2023) · Experimental & Molecular Medicine · doi:10.1038/s12276-023-01074-1 · Cited by 119 · see citing works
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“Examples of assembloids are the combination of organoids resembling different regions of the brain, such as dorsal and ventral forebrain, or thalamic and cortical organoids to study the spatial organization and functional interaction between the various subtypes of cells (Xiang et al., 2019).”
BackgroundMarangon, D., Caporale, N., Boccazzi, M., Abbracchio, M. P., Testa, G., & Lecca, D. (2021) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2021.748849 · Cited by 34 · see citing works
- Authors
- Xiang, Y., Tanaka, Y., Cakir, B., Patterson, B., Kim, K.-Y., Sun, P., Kang, Y.-J., Zhong, M., Liu, X., Patra, P., Lee, S.-H., Weissman, S. M., & Park, I.-H.
- Affiliations
- Yale University (US)
- University of Arkansas for Medical Sciences (US)
- University of Bridgeport (US)
- Corresponding author
- Park, In-Hyun
- ORCID
- Venue
- Cell Stem Cell
- Publisher
- Elsevier BV
- Published
- 2019-03
- Volume
- 24
- Issue
- 3
- Pages
- 487-497.e7
- ISSN
- 1875-9777 (ISSN-L)
- 1934-5909
- PMC
- PMC6853597
- OpenAlex
- W2917788812
- Cited by
- 485
- References
- 48
- Citations by year
- 2026: 37 · 2025: 70 · 2024: 87 · 2023: 67 · 2022: 75 · 2021: 71 · 2020: 53 · 2019: 25
- FWCI
- 18.62
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell stem cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (GM111667-01, R01AA025080-01, R01CA203011-2)
- National Institute of General Medical Sciences
- Kavli Foundation
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- human embryonic stem cells, cortical organoids, organoid fusion, thalamocortical connections, thalamus development, telencephalon
- MeSH terms
- Human Embryonic Stem Cells, Cerebral Cortex, Humans, Models, Biological, Organoids, Thalamus
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