Early Alzheimer’s disease pathology in human cortex involves transient cell states
Gazestani, Vahid, Kamath, Tushar, Nadaf, Naeem M., Dougalis, Antonios, Burris, S.J., Rooney, Brendan, Junkkari, Antti, Vanderburg, Charles, Pelkonen, Anssi, Gomez-Budia, Mireia, Välimäki, Nelli-Noora, Rauramaa, Tuomas, Therrien, Martine, Koivisto, Anne M., Tegtmeyer, Matthew, Herukka, Sanna-Kaisa, Abdulraouf, Abdulraouf, Marsh, Samuel E., Hiltunen, Mikko, Nehme, Ralda, Malm, Tarja, Stevens, Beth, Leinonen, Ville, Macosko, Evan Z.·2023·Cell
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- SRRM2 haploinsufficiency drives SynGAP-γ reduction, AGAP3 mis-splicing, and oligodendrocyte deficits in a mouse model of schizophreniaSameer Aryal, Chuhan Geng, Margaret A. Yin, Min Jee Kwon, Zohreh Farsi, Nathaniel Goble, Ahmet S. Asan, Kira S. Brenner, Nate Shepard, Ana Geller et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Effect of knockdown LncRNA SNHG1 on autophagic function in SH-SY5Y cells: a model of Alzheimer’s disease (AD)Xiaoxu Li, Xu-Sheng Yan, Chun-Jie Zhang, Yichi Zhang, Xiao-Jing Su, He Zhang, Jin Yang, Yilong Zhang, Zhiying Zhao · 2025 · Journal of Toxicology and Environmental Health
- Human brain cell types shape host-rabies virus transcriptional interactions revealing a preexisting pro-viral astrocyte subpopulationLena Feige, Karl Young, Juan‐Pablo Cerapio, Tatsuya Kozaki, Lauriane Kergoat, Valentina Libri, Florent Ginhoux, Milena Hasan, Lamya Ben Ameur, Gregory Chin et al. · 2025 · Cell Reports
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- Lactate metabolism links reactive microglia, amyloid pathology, and Aβ dynamicsClair C. Ashley, Nicholas J. Constantino, Ryan J. Pettit‐Mee, James Andy Snipes, Kai Saito, Riley E. Irmen, Rui Zhang, Evan M. Neary, Matthew J. Lanning, Celeste M M. Karch et al. · 2026 · Journal of Neuroinflammation
- PS1/gamma-secretase acts as rogue chaperone of glutamate transporter EAAT2/GLT-1 in Alzheimer’s diseaseFlorian Perrin, Lauren C. Anderson, Shane P. C. Mitchell, Priyanka Sinha, Yuliia Turchyna, Masato Maesako, Mei CQ Houser, Can Martin Zhang, Steven L. Wagner, Rudolph E. Tanzi et al. · 2024 · Acta Neuropathologica Communications
- Integrative single-cell and cell-free plasma RNA transcriptomics identifies biomarkers for early non-invasive AD screeningLi Wu, Renxin Zhang, Yichao Wang, Shao‐Xing Dai, Naixue Yang · 2025 · Frontiers in Aging Neuroscience
- Spatial2GWAS: a database for linking spatial transcriptomic regions with GWAS traitsXi Hu, Aoqi Wang, Huan Yu, Pora Kim, Xiaobo Zhou · 2025 · Nucleic Acids Research
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- Tau mediates the reshaping of the transcriptional landscape toward intermediate Alzheimer’s disease stagesGiacomo Siano, Martina Varisco, Marco Terrigno, Congwei Wang, Arianna Scarlatti, Vincenzo Iannone, Marco Groth, Marie‐Christine Galas, Jeroen J.M. Hoozemans, Alessandro Cellerino et al. · 2025 · Frontiers in Cell and Developmental Biology
- A Question of Origins: Non-neuronal Sources of Amyloid-βAndrew Octavian Sasmita, Constanze Depp · 2026 · Neuroscience Bulletin
- Glioinflammation: disease-associated microglia and astrocytes in psychiatric disorders, neurodegeneration, and senescenceKumiko Uemura, Shunya Hiro, Suthinee Attachaipanich, Ruixue Du, Nur Intan Saidaah Mohamed Yusof, Miyu Kinoshita, Momoka Hikosaka, Gen Ohtsuki · 2026 · Frontiers in Cellular Neuroscience
- Potential Protection Against Parkinson’s Disease by Ergothioneine—Nature’s Multifactorial NeuroprotectantTeddy J. W. Tng, Irwin Kee-Mun Cheah, Barry B. Halliwell, Kah‐Leong Lim · 2026 · Antioxidants
- Secreted GPNMB enhances uptake of fibrillar alpha-synuclein in a non-cell-autonomous process that can be blocked by anti-GPNMB antibodiesMarc Carceles‐Cordon, Eliza M. Brody, Masen L. Boucher, Michael D. Gallagher, R. Tyler Skrinak, Travis L. Unger, Cooper K Penner, Adama J. Berndt, Sromona Das, Katie Lam et al. · 2026 · Neuron
- Lysosomal dysfunction drives a transcriptional and epigenetic signature found in disease-associated microglia in neurodegenerative diseasesChristopher D. Balak, Johannes C. M. Schlachetzki, Addison J. Lana, Elizabeth West, Christine Hong, Jordan DuGal, Yi Zhou, Benjamin Li, Nathanael J. Spann, Payam A. Saisan et al. · 2026 · Immunity
- Deep learning assisted quantitative analysis of Aβ and microglia in patients with idiopathic normal pressure hydrocephalus in relation to cognitive outcomeAntti Johannes Luikku, Ossi Nerg, Anne Maria Koivisto, Tuomo Hänninen, Antti Junkkari, Susanna Kemppainen, Sini-Pauliina Juopperi, Rosa Sinisalo, Alli Pesola, Hilkka Soininen et al. · 2024 · Journal of Neuropathology & Experimental Neurology
- Early metabolic changes in the brain of Alzheimer’s disease rats are driven by GLAST+ cellsWilliam J Morrey, Kelly Ceyzériat, Quentin Amossé, Aurélien M. Badina, Ben Dickie, Ingo Schießl, Stergios Tsartsalis, P. Millet, Hervé Boutin, Benjamin B. Tournier · 2025 · Journal of Cerebral Blood Flow & Metabolism
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- Context-dependent regulatory variants in Alzheimer’s diseaseZiheng Chen, Yaxuan Liu, Ashley R. Brown, Heather H. Sestili, Easwaran Ramamurthy, Xushen Xiong, Dmitry Prokopenko, BaDoi N. Phan, Lahari Gadey, Robert van de Weerd et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Glial changes and gene expression in Alzheimer's disease from snRNA-Seq and spatial transcriptomicsSongren Wei, Chenyang Li, W.Q. Li, Fumiao Yuan, Jingjing Kong, Xi Su, Peng Huang, Hongbo Guo, Jiangping Xu, Haitao Sun · 2025 · Journal of Alzheimer s Disease
- Single-cell elderly blood–CSF atlas implicates peripherally influenced immune dysregulation in normal pressure hydrocephalusPhan Q. Duy, Emre Kiziltug, Ana B.W. Greenberg, Neel H. Mehta, Le T. Hao, Carla Fortes, Susan Mullany, Baojian Fan, Ani W Manichaikul, Andrew F. Teich et al. · 2025 · Proceedings of the National Academy of Sciences
- White matters arising: Rethinking Alzheimer’s disease through the lens of myelinConstanze Depp · 2025 · Science
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- Utilisation of Machine Learning Approaches Improves RNA-Seq Transcriptome Analyses in Alzheimer’s Disease BrainYuning Cheng, Kristina Santucci, Yulan Gao, Konii Takenaka, Grace Lindner, Si-Mei Xu, Michael Janitz · 2026 · Journal of Molecular Neuroscience
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- Srrm2 haploinsufficiency drives SynGAP-γ reduction, Agap3 mis-splicing, and oligodendrocyte deficits in a genetic mouse model of schizophreniaSameer Aryal, Chuhan Geng, Margaret A. Yin, Min Jee Kwon, Zohreh Farsi, Nathaniel Goble, Ahmet S. Asan, Kira S. Brenner, Nate Shepard, Ana Geller et al. · 2026 · Cell Reports
- The bidirectional effects of APPswe on the osteogenic differentiation of MSCs in bone homeostasis by regulating Notch signalingNan Wang, Xiaoyu Shen, Huakun Huang, Runhan Zhao, Habu Jiwa, Zongxin Li, Pei Li, Jixing Ye, Qiang Zhou · 2024 · Genes & Diseases
- Evolutionary neurogenomics at single-cell resolutionEmre Caglayan, Geneviève Konopka · 2024 · Current Opinion in Genetics & Development
- Sonic Hedgehog Is an Early Oligodendrocyte Marker During RemyelinationMariagiovanna Russo, Amina Zahaf, Abdelmoumen Kassoussi, Ariane Sharif, Hélène Faure, Élisabeth Traiffort, Martial Ruat · 2024 · Cells
- Lower expression of BIN1's neuronal isoform in vulnerable excitatory neurons increases risk in Alzheimer's diseaseRajesh Ranganathan, Siwen Li, Georgy Sapozhnikov, Shoutang Wang, You‐Qiang Song · 2025 · Journal of Alzheimer s Disease Reports
- Tau alters global gene expression affecting chromatin in the early stages of Alzheimer’s diseaseGiacomo Siano, Martina Varisco, Marco Terrigno, C. Wang, Marco Groth, Marie‐Christine Galas, Jeroen J.M. Hoozemans, Alessandro Cellerino, Antonino Cattaneo, Cristina Di Primio · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- A single-cell eQTL atlas of the human cerebellum reveals vulnerability of oligodendrocytes in essential tremorGuy Armand Rouleau, Charles-Etienne Castonguay, Farah Aboasali, Miranda Medeiros, Théodore Becret, Zoe Schmilovich, Anouar Khayachi, Alex H. Rajput, Patrick A. Dion · 2024 · Research Square
- Muti-omics characterization reveals brain-wide disruption of synapses and region- and age-specific changes in neurons and glia in Sp4 mutant mice, a genetic model of schizophrenia and bipolar disorderMin Jee Kwon, Kira A. Perzel Mandell, Sameer Aryal, Chuhan Geng, Ally A. Nicolella, Antia Valle-Tojeiro, Sahana Natarajan, Deeksha Misri, Alyssa Hall, Bryan J. Song et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Cell-type specific profiling of human entorhinal cortex at the onset of Alzheimer’s disease neuropathologyPatricia Rodriguez‐Rodriguez, Wei Wang, Christina Tsagkogianni, Irena Feng, Ana Morello-Megias, Kaahini Jain, Vilma Alanko, Han Ali Kahvecioglu, Elyas Mohammadi, Xiaofei Li et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Comparing phenotypic manifolds with Kompot: Cluster-free differential expression at single-cell resolutionDominik J. Otto, Erica A. Arriaga-Gomez, Elana Thieme, Ruijin Yang, Stanley Chun-Wei Lee, Manu N. Setty · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Ketone body β-hydroxybutyrate restores neuronal Tau proteostasis via ketolysis-independent mechanismLeigh-Ana M. Rossitto, Jamie Foo, Julia M Di Silvestri, Leanne M Lehmann, Melina Brunelli, Yuhang Nie, Daniel Muñoz-Mayorga, Qiang Xiao, Anna Y Dai-Liu, Suborno Jati et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Multiregional single-cell profiling reveals shared and specialized cellular vulnerability in Alzheimer’s diseaseKyle J. Travaglini, Mariano I. Gabitto, Yi Ding, Anamika Agrawal, Nadia O. Postupna, Joseph T. Mahoney, Eitan S Kaplan, Erica J. Melief, Jeff Goldy, Anish Bhaswanth Chakka et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Enhanced differentiation of neural progenitor cells in Alzheimer’s disease into vulnerable immature neuronsJoonho Cho, Simsung Bae, Juyeong Jeon, Janis Lisa Transfeld, Changyeob Lee, Alexi Nott, Fan Gao, Jinsoo Seo · 2025 · iScience
- Precision medicine in the pediatric and neonatal intensive care units through genomicsPhan Q. Duy, Benjamin Dylik, Engin Deniz · 2025 · Current Opinion in Pediatrics
- Identification of Novel Biomarkers Related to Vesicle Trafficking in Alzheimer’s Disease Using Bioinformatics ApproachesYirong Hu, Yi Liu, Qiuyan Zhu, Yong Chen, Ying Zeng · 2025 · Neurochemical Research
- Gene module-trait network analysis uncovers cell type specific systems and genes relevant to Alzheimer's DiseaseKátia de Paiva Lopes, Ricardo A. Vialle, Gilad Green, Masashi Fujita, Chris Gaiteri, Vilas Menon, Julie A. Schneider, Yanling Wang, Philip L. De Jager, Naomi Habib et al. · 2025 · Acta Neuropathologica Communications
- Machine Learning-Enhanced Hyperspectral Raman Imaging for Label-Free Molecular Atlas of Alzheimer’s BrainZiyang Wang, Jeewan C. Ranasinghe, Dennis C. Y. Chan, Ashley Gomm, Rudolph E. Tanzi, Can Martin Zhang, Nanyin Zhang, Shengxi Huang · 2025 · ACS Applied Materials & Interfaces
- Astrocytic TPK1 mitigates amyloid pathology via TFEB-mediated endocytosisShu-Zhen Zhang, Yuan Ma, Yu Ding, Yanqing Yin, B. Wang, Gang Hu, Jia-Wei Zhou · 2026 · Experimental Neurology
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- PROTAC-mediated multi-target protein degradation in Alzheimer's disease: mechanistic insights, therapeutic applications, and translational challengesBin Wang, Yunan Li, Tingting Yao, Xinai Shen, Huan Li, Wei Jiang, Xinuo Li, Zheying Zhu · 2026 · RSC Medicinal Chemistry
- Phagocytosis and neuroinflammation: orchestrating central nervous system homeostasis, repair, and the resolution of inflammationAndrew D. Gaudet, Laura K. Fonken · 2026 · Trends in Neurosciences
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- Dissecting microglial contributions to neurodegenerative disease pathophysiology using human pluripotent stem cellsDayoung Kim, Takayuki Kondo, Haruhisa Inoue · 2026 · Stem Cell Reports
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- Additional file 3 of Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case studyJie Pan, Jaume Forés-Martos, Claire Delpirou Nouh, Tanner D. Jensen, Kristen Vallejo, Romain Cayrol, Saman Seyed Ahmadian, Euan Angus Ashley, Michael D. Greicius, Inma Cobos · 2024 · Figshare
- Additional file 4 of Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case studyJie Pan, Jaume Forés-Martos, Claire Delpirou Nouh, Tanner D. Jensen, Kristen Vallejo, Romain Cayrol, Saman Seyed Ahmadian, Euan Angus Ashley, Michael D. Greicius, Inma Cobos · 2024 · Figshare
- Additional file 5 of Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case studyJie Pan, Jaume Forés-Martos, Claire Delpirou Nouh, Tanner D. Jensen, Kristen Vallejo, Romain Cayrol, Saman Seyed Ahmadian, Euan Angus Ashley, Michael D. Greicius, Inma Cobos · 2024 · Figshare
- Additional file 2 of Deciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profiling: a case studyJie Pan, Jaume Forés-Martos, Claire Delpirou Nouh, Tanner D. Jensen, Kristen Vallejo, Romain Cayrol, Saman Seyed Ahmadian, Euan Angus Ashley, Michael D. Greicius, Inma Cobos · 2024 · Figshare
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