Empowering biomedical discovery with AI agents

Cited by (322)

Items 101–200 of 322

  1. Talk2Biomodels: AI agent-based open-source LLM initiative for kinetic biological models
    Lilija Wehling, Gurdeep Singh, Ahmad Wisnu Mulyadi, Rakesh Hadne Sreenath, Henning Hermjakob, Tung V. N. Nguyen, Thomas Rückle, Mohammed H. Mosa, Henrik Cordes, Tommaso Andreani et al. · 2025 · BMC Bioinformatics
  2. Foundation models in clinical oncology: Progresses and perspectives
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  3. GenAI-agents in education: a systematic review of macro-level trends, educational roles, theoretical foundations and future agendas
    Xingchang Liu, Qianwen Tang, Wanting Wu, X Y Chen, Chengliang Wang · 2026 · Interactive Learning Environments
  4. A conceptual framework for human–AI collaborative genome annotation
    Xiaomei Li, Alex Whan, Meredith McNeil, David Starns, Jessica L. Irons, Samuel C. Andrew, Radosław Suchecki · 2025 · Briefings in Bioinformatics
  5. Cell‐Membrane‐Camouflaged Biomimetic Nanomedicines for Cerebral Ischemia‐Reperfusion Injury Treatment
    Yihong Su, Bingcang Huang, Dingsheng Liu, Luodan Yu, Yu Chen · 2025 · Advanced Healthcare Materials
  6. Development of a 3D Human Colon Model Along with Bioelectronics for the Induction and Monitoring of Diseases
    Jorge Alfonso Tavares Negrete, Sahar Najafikoshnoo, Anita Ghandehari, Mozhgan Keshavarz, Quinton Smith, A. A. Ahmetaj, Saeid Zanganeh, Rahim Esfandyarpour · 2025 · Advanced Science
  7. Agentic Large Language Models for Conceptual Systems Engineering and Design
    Soheyl Massoudi, Mark Fuge · 2025 · Journal of Mechanical Design
  8. A multi-agent approach to neurological clinical reasoning
    Moran Sorka, Alon Gorenshtein, Dvir Aran, Shahar Shelly · 2025 · PLOS Digital Health
  9. AI-driven CRISPR screening: optimizing gene editing through automation and intelligent decision support
    Yuxi Zhao, Xingrui Li, Yaying Du · 2026 · Journal of Translational Medicine
  10. From conventional screening to self-driving discovery: Organ-on-Chip platforms as engines for AI-guided nanomedicine
    Kimia Asadi Jozani, Karen Shen, Nicky Anvari, Daniel Hocevar, Rosanna Jiang, Boyang Zhang, Ilya Yakavets, Yimu Zhao · 2026 · Advanced Drug Delivery Reviews
  11. AutoMed: Multi-Agent AI System for Personalized Medical Knowledge Retrieval and Summarization
    Manav Israni, Shruti Renuse, V. Premanand · 2025 · International Conference on Data Science, Agents & Artificial Intelligence (ICDSAAI)
  12. Cardiovascular Complications Are Increased in Inflammatory Bowel Disease: A Path Toward Achievement of a Personalized Risk Estimation
    Vito Annese, Maria Laura Annunziata, Guglielmo Albertini Petroni, Emanuele Orlando, Sofia Cinque, Marzio Parisi, Paolo Biamonte, Giuseppe Dell’Anna, Anna Latiano, Serenella Castelvecchio · 2025 · Journal of Personalized Medicine
  13. A Framework for Autonomous AI-Driven Drug Discovery
    Douglas W. Selinger, Timothy R. Wall, Eleni S. Stylianou, Ehab M. Khalil, Jedidiah Gaetz, Oren Levy · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  14. DORA AI Scientist: Multi-agent Virtual Research Team for Scientific Exploration Discovery and Automated Report Generation
    Naumov, Vladimir, Zagirova, Diana, Lin, Sha, Xie, Yupeng, Gou, Wenhao, Urban, Anatoly, Tikhonova, Nina, Alawi, Khadija, Durymanov, Mike, Galkin, Fedor et al. · 2025
  15. PhenoGraph: A Multi-Agent Framework for Phenotype-driven Discovery in Spatial Transcriptomics Data Augmented with Knowledge Graphs
    Seyednami Niyakan, Xiaoning Qian · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  16. Episodic Memory in AI Agents Poses Risks that Should be Studied and Mitigated
    DeChant, Chad · 2025 · 2025 IEEE Conference on Secure and Trustworthy Machine Learning (SaTML)
  17. Accelerating primer design for amplicon sequencing using large language model-powered agents
    Yi Wang, Yuejie Hou, Lin Yang, Shisen Li, Weiting Tang, Hui Ru Tang, Qigai He, Siyuan Lin, Yan‐Yan Zhang, Xingyu Li et al. · 2025 · Nature Biomedical Engineering
  18. AI agents in Alzheimer’s disease management: challenges and future directions
    Gerasimos Grammenos, Aristidis G. Vrahatis, Konstantinos Lazaros, Themis P. Exarchos, Panagiotis Vlamos, Marios G. Krokidis · 2026 · Frontiers in Aging Neuroscience
  19. Toward Sustainable Agentic AI Systems: A Survey of Architectures and Methodologies
    Yubeen Lee, Eunil Park · 2026 · Sustainable Development
  20. Recent advances in the biodegradable polymers for environmental and biomedical applications
    Abid Ullah, Noor Rehman, Rizwan Ullah, Hidayat Ullah, Abbas Khan, Muhammad Sadiq, Badshah Ullah, Nadia Khan, Fazal Ghani · 2026 · Polymer Bulletin
  21. Enhancing soil science research with multi-agent artificial intelligence systems
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  22. Biobanking in the Era of Artificial Intelligence: Convergence, Challenges, and Opportunities
    Nam Khoa Tran, Rajiv Dhir, Hooman Rashidi · 2026 · Biopreservation and Biobanking
  23. Large Language Models for Knowledge Discovery in Healthcare
    Shadi Mahmoud Faleh AlZu’bi, Tarek Ghazi Kanan, Muder Almiani · 2024 · International Conference on Intelligent Computing, Communication, Networking and Services (ICCNS)
  24. A roadmap for AI-aided digital twins in computational nuclear oncology: A position paper by the EANM
    Lara Cavinato, Margarita Kirienko, Laszlo Papp, Kuangyu Shi, Dimitris Visvikis, Arturo Chiti, Martina Sollini · 2025 · The EANM Journal
  25. Development and validation of a multidimensional and interpretable artificial intelligence model to predict gout recurrence in hospitalised patients: a real-world, ambispective multicentre cohort study in China
    Meng Li, Hui Zhang, Shixian Chen, Fei Zhong, Jiani Liu, Juan Wu, Ruifeng Lin, Ruichang Li, Yu Feng Wu, Danning Xie et al. · 2025 · BMC Medicine
  26. OmniCellAgent: An AI Scientist for Omic-Driven Scientific Discovery
    Di Huang, Hao Li, Wenyu Li, Heming Zhang, Tianqi Xu, Yifei Lu, Kaiwen Fang, Zixi Xu, Justin Chen, Patricia Dickson et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  27. AI vs Human Performance in Conversational Hospital-Based Neurological Diagnosis
    Moran Sorka, Alon Gorenshtein, Hillel Abramovitch, Pannathat Soontrapa, Shahar Shelly, Dvir Aran · 2025 · medRxiv
  28. Orchestrating Microbiome Analysis with Bioconductor
    Tuomas Borman, Giulio Benedetti, Geraldson Muluh, Aura Raulo, Benjamín Valderrama, Artur Sannikov, Stefanie Peschel, Yihan Liu, Rasmus Hindström, Katariina M. M. Pärnänen et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  29. FR-BINN: Biologically Informed Neural Networks for Enhanced Biomarker Discovery and Pathway Analysis
    Yangkun Cao, Chaoyi Yin, Xu Zhou, Yonghe Zhao · 2025 · International Journal of Molecular Sciences
  30. Synergy of robotics and microfluidics for intelligent micro- and nanomanipulation
    Mengmeng Xi, Pengsong Zhang, Junyue Dai, Jia Dong Shi, Haoran Cui, Bowen Wang, Junhui Zhu, Peng Pan, Xinyu Liu · 2025 · Biomicrofluidics
  31. General artificial intelligence for the diagnosis and treatment of cancer: the rise of foundation models
    Ali A. Tarhini, Palak Dave, Issam El Naqa · 2025 · BJR|Artificial Intelligence
  32. Empowering scientific discovery with explainable small domain-specific and large language models
    Hengjie Yu, Yizhi Wang, Tao Cheng, Yan Yan, Kenneth A. Dawson, Sam Fong Yau Li, Yefeng Zheng, Yaochu Jin · 2025 · Artificial Intelligence Review
  33. Towards Intelligent Virtual Clerks: AI-Driven Automation for Clinical Data Entry in Dialysis Care
    Perasuk Worragin, Suepphong Chernbumroong, Kitti Puritat, Phichete Julrode, Kannikar Intawong · 2025 · Technologies
  34. Dreams, Distortions, and Disruptions
    Murat ARTSIN, Aras Bozkurt · 2025 · Advances in computational intelligence and robotics book series
  35. Autonomous Agentic AI for Clinical Workflow Orchestration: Self-Managing Healthcare Operations
    Arjun Rajeev Warrier, Abhilash K S · 2025 · International Conference on IoT Based Control Networks and Intelligent Systems (ICICNIS)
  36. Generative AI in pharmaceutical R&D: From large language models to AI agents to regulation
    James Weatherall, Chris Meier · 2026 · Drug Discovery Today
  37. What are the limits to biomedical research acceleration through general-purpose AI?
    Konstantin Hebenstreit, Constantin Convalexius, Stephan Reichl, Stefan Ernest Huber, Christoph Bock, Matthias Samwald · 2026 · Scientific Reports
  38. Envisioning digital health ecosystem transformation in Canada «a conceptual foundation en Neuf Etapes.»
    Pai, Nitika Pant, Rahimi, Samira Abbasgholizadeh, Tulsi, Juhi, Bartlett, Susan, Grover, Steven, Sejdic, Ervin · 2026 · FACETS
  39. From foundation models to autonomous agents in biology
    Shenghui Huang, Mei Lang, Zihan Chen, Chenxu Yang, Xiaoying Huang, Zeynab Mohtashaminia, Yuzhong Peng · 2026 · Genomics Communications
  40. Cross-species plant single-cell analysis: community challenges and shared solutions
    Maryam Haghani, Tran N Chau, Razan M. Alajoleen, Chia‐Yu Chen, Sajib Acharjee Dip, Vandana Gurung, Che‐Wei Hsu, Chadinthon Kittivorawong, Sanchari Kundu, Xiaohui Li et al. · 2026 · Journal of Experimental Botany
  41. The cellular actors of the tumor microenvironment: a single-cell atlas perspective on specialized subtypes, coordinated networks, and immunotherapy
    Linnan Zhu, Nan Jiang, Zemin Zhang · 2026 · Immunity & Inflammation
  42. Spatial biomarker discovery via interpretable semantic learning in histopathology
    Junhao Liang, Xiaofeng Jiang, Nic Gabriel Reitsam, Tim Lenz, Li Zhang, Marco Gustav, Zunamys Itzell Carrero, Hannah Sophie Muti, Peter Neidlinger, Jan Clusmann et al. · 2026 · Cancer Cell
  43. Empowering biomedical evidence exploration and synthesis with deep knowledge graph research
    Zifeng Wang, Zheng Chen, Ziwei Yang, X Wang, Qiao Jin, Yifan Peng, Zhiyong Lu, Jimeng Sun · 2026 · Nature Machine Intelligence
  44. MutexaGPT: an intuition-to-design translator for physics-based enzyme engineering
    Qianzhen Shao, Yinjie Zhong, Sebastian L. Stull, Xinchun Ran, Ning Ding, Kieran Nehil-Puleo, Ruizhe Yao, Han Xu, Zhongyue John Yang · 2026 · Nature Computational Science
  45. Generative artificial intelligence tools in journal article preparation: A preliminary catalog of ethical considerations, opportunities, and pitfalls
    Robin R. White · 2025 · JDS Communications
  46. PerTurboAgent: A Self-Planning Agent for Boosting Sequential Perturb-seq Experiments
    Minsheng Hao, Yongju Lee, Hanchen Wang, Gabriele Scalia, Aviv Regev · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  47. Unveiling fundamental principles: visualizing T cell immunity with explainable artificial intelligence
    Liyun Tu, Aoyu Xu, Hantao Lou, Yongzhi Huang, Jian-Qing Zheng, Yu Chen, Song Zhang · 2025 · Medicine Plus
  48. Using Embodied Artificial Intelligence Agents to Automate Biorisk Management Tasks in High-Containment Laboratories
    Leyma P. De Haro · 2025 · Applied Biosafety
  49. Empowering Biomedical Research with Foundation Models in Computational Microscopy: A Systematic Review
    Di Ding, Tianliang Yao, Genyi Feng, Xueqing Gao, Xusen Sun, Rong Luo · 2025 · Advanced Intelligent Systems
  50. TMBquant: an explainable AI-powered caller advancing tumor mutation burden quantification across heterogeneous samples
    Shenjie Wang, Xiaonan Wang, Xiaoyan Zhu, Xuwen Wang, Yuqian Liu, Minchao Zhao, Zhili Chang, Yang Washington Shao, Haitao Zhang, Shuanying Yang et al. · 2025 · Briefings in Bioinformatics
  51. AI- and Biotechnology-Driven Digital Design of Biohydrogen-Producing Microbiota
    Qian Liu, Shuang Gao, Yanan Hou, Jianfeng Liu, Qianqian Yuan, Ai-Jie Wang, Nanqi Ren, Cong Huang · 2025 · Engineering
  52. A Generative AI-Enhanced Robotic Desktop Automation Framework for Multi-System Nephrology Data Entry in Government Healthcare Platforms
    Sumalee Sangamuang, Perasuk Worragin, Kitti Puritat, Phichete Julrode, Kannikar Intawong · 2025 · Technologies
  53. Beyond the Cell Atlas
    Yiming Li, Tingkun Ma, Hao Lu, Yiping Yan, Yucheng Xue, Jinmeng Suo, Yusheng Chen, Zhiyong Peng · 2026 · Journal of the American Society of Nephrology
  54. Application of artificial intelligence in head and neck squamous cell carcinoma
    Peipei Wang, Jiaxin Tian, Guowan Zheng, Yunzhao Chen, Xinxin Ren · 2026 · Annals of Medicine
  55. Leveraging artificial intelligence in tissue regenerative engineering via small-molecule libraries
    Fatemeh S. Hosseini, Taraje Whitfield, Juan Mitchell, Yingcui Li, Kevin W.‐H. Lo · 2026 · Drug Discovery Today
  56. Socially Minded Intelligence: How Individuals, Groups, and Artificial Intelligence Can Make Each Other Smarter (or Not)
    William Bingley, S. Alexander Haslam, Janet Wiles · 2026 · Personality and Social Psychology Review
  57. Beyond accuracy: comprehensive alignment for AI-driven molecular design
    Q H Zhang, Xiang Zhuang, Chenyi Zhou, Yihang Zhu, Tong Xu, Tianhao Li, Dianbo Liu, Shengchao Liu, Keyan Ding, Michael Li et al. · 2026 · AI for Science
  58. Artificial Intelligence in Orthopedic Trauma: A Narrative Review
    Carson Walters, Porter F Young · 2026 · Cureus
  59. schema-miner pro: Agentic AI for Ontology Grounding Over LLM-Discovered Scientific Schemas in a Human-in-the-Loop Workflow
    Sameer Sadruddin, Jennifer D’Souza, Eleni Poupaki, Alex Watkins, Bora Karasulu, Sören Auer, Adriaan J. M. Mackus, W. M. M. Kessels · 2026 · Semantic Web
  60. The State of World Research Toward AI Agents and Future Perspective: A Bibliometric Study
    Mohammad Al Rashdi, Shams Jamal Fayyadh, Yousif Raad Muhsen, S. Abbas, Alkhensaa Abdulatheem Mohammed, Ahmed Abbas Jasim Al-Hchaimi · 2026 · Lecture notes in networks and systems
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    Jason H. Yang, Caleb J. Bashor · 2026 · Advanced Drug Delivery Reviews
  62. Use of AI agents to assess preoperative frailty in cancer patients
    Denise T. Lee, Steven Yen, Georgia E. Smits, David S. Matteson, Noah Cohen, Eyal Klang, Girish N. Nadkarni, Michael L. Marin · 2026 · npj Digital Surgery
  63. Harnessing Deep Learning Models for Guide RNA Optimization and Off‐Target Prediction in CRISPR Systems
    Muhammad Saeed, Muhammad Arham, Imran Zafar, Adil Jamal, Majid Hussian, Muhammad Usman, Fayez Saeed Bahwerth, Muhammad Noman, Md. Belal Hossain · 2026 · Biotechnology Journal
  64. AI-driven cellular immunotherapy: transforming CAR-T engineering and translation
    Ziliang Huang, Xinhui Wang, Lukai Lin, Yahan Liu, Xiaoshuai Huang, Pengli Zheng, Bei Liu, Yiqian Wu · 2026 · Physics of Life Reviews
  65. Toward generalizable and interpretable AI in regulatory genomics
    Masayuki NAGAI, Alan E Murphy, Kaeli Rizzo, Peter K. Koo · 2026 · Nature Genetics
  66. AI for science: Progress, challenges, and perspectives
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  67. Agentic systems in computational pathology: architectures, evidence, and translational challenges
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  68. The synergy of artificial intelligence in biomaterials, regenerative medicine and drug delivery
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  69. Herbal medicine in the modern age: The era of personalized precision
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  70. The synthetic Turn in healthcare AI: Promise and Peril
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  71. Perspective on utilizing foundation models for laboratory automation in materials research
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  72. Case Study of Using AI as Co-Pilot in Biotech Research: Functional Network Analysis of Invasive Cancer
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  73. Human-supervised Agentic AI for Hypothesis Generation and Experimental Assistance in Drug Repurposing
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  74. A Review of Multi-Agent AI Systems for Biological and Clinical Data Analysis
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  75. Exploring the Efficacy of Large Language Models in Predicting Chemical Toxicity
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  77. Agent AI Becomes Next Addictive Disorder
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  78. Intelligent tool orchestration for rapid mechanistic model prototyping: MCP servers as AI-biology interfaces
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