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Single-Molecule Quantification of Translation-Dependent Association of mRNAs with the Endoplasmic Reticulum
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Several studies have documented the presence of Gapdh mRNA in association with the ER.
“Notably, although Gapdh is a cytosolic protein-encoded gene, several studies have documented the presence of Gapdh mRNA in association with the ER [57–61].”
From The Mitochondria-Associated ER Membranes Are Novel Subcellular Locations Enriched for Inflammatory-Responsive MicroRNAs (2020) · cites this paper as [61]
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Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. S., & Weissman, J. S. (2009) · Science · doi:10.1126/science.1168978 · Cited by 3,853
The mammalian ribo-interactome reveals ribosome functional diversity and heterogeneity
Simsek, D., Tiu, G. C., Flynn, R. A., Byeon, G. W., Leppek, K., Xu, A. F., Chang, H. Y., & Barna, M. (2017) · Cell · doi:10.1016/j.cell.2017.05.022 · Cited by 439
The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells
Horvathova, I., Voigt, F., Kotrys, A. V., Zhan, Y., Artus-Revel, C. G., Eglinger, J., Stadler, M. B., Giorgetti, L., & Chao, J. A. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.09.030 · Cited by 225
Self-citationBarman, B., & Bhattacharyya, S. N. (2015) · Journal of Biological Chemistry · doi:10.1074/jbc.c115.661868 · Cited by 86
Flagged first, then by citations
Research works printed but not linked: 68
- Azzam, 1973, Mechanism of puromycin action: fate of ribosomes after release of nascent protein chains from polysomes, Proc. Natl. Acad. Sci. USA, 70, 3866, 10.1073/pnas.70.12.3866 · DOI
- Banaszynski, 2006, A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules, Cell, 126, 995, 10.1016/j.cell.2006.07.025 · DOI · Paper page
- Benaglia, 2009, mixtools: An R package for analyzing finite mixture models, J. Stat. Softw., 32, 1
- Berthold, 2009, KNIME - the Konstanz information miner: version 2.0 and beyond, SIGKDD Explor., 11, 26, 10.1145/1656274.1656280 · DOI
- Bertrand, 1998, Localization of ASH1 mRNA particles in living yeast, Mol. Cell, 2, 437, 10.1016/S1097-2765(00)80143-4 · DOI
- Cenik, 2017, A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and N1-methyladenosine modification, RNA, 23, 270, 10.1261/rna.059105.116 · DOI
- Chao, 2008, Structural basis for the coevolution of a viral RNA-protein complex, Nat. Struct. Mol. Biol., 15, 103, 10.1038/nsmb1327 · DOI
- Chen, 2011, Hierarchical regulation of mRNA partitioning between the cytoplasm and the endoplasmic reticulum of mammalian cells, Mol. Biol. Cell, 22, 2646, 10.1091/mbc.e11-03-0239 · DOI
- Cui, 2012, Visualization of endoplasmic reticulum localized mRNAs in mammalian cells, J. Vis. Exp., 70, e50066
- Cui, 2014, Localization of mRNAs to the endoplasmic reticulum, Wiley Interdiscip. Rev. RNA, 5, 481, 10.1002/wrna.1225 · DOI
- Cui, 2012, p180 promotes the ribosome-independent localization of a subset of mRNA to the endoplasmic reticulum, PLoS Biol., 10, e1001336, 10.1371/journal.pbio.1001336 · DOI
- Cui, 2015, mRNA encoding Sec61β, a tail-anchored protein, is localized on the endoplasmic reticulum, J. Cell Sci., 128, 3398
- Diehn, 2006, Genome-scale identification of membrane-associated human mRNAs, PLoS Genet., 2, e11, 10.1371/journal.pgen.0020011 · DOI
- Gaddam, 2013, Comparison of mRNA localization and regulation during endoplasmic reticulum stress in Drosophila cells, Mol. Biol. Cell, 24, 14, 10.1091/mbc.e12-06-0491 · DOI
- Gilmore, 1982, Protein translocation across the endoplasmic reticulum. I. Detection in the microsomal membrane of a receptor for the signal recognition particle, J. Cell Biol., 95, 463, 10.1083/jcb.95.2.463 · DOI
- Goedhart, 2012, Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%, Nat. Commun., 3, 751, 10.1038/ncomms1738 · DOI
- Görlich, 1990, The signal sequence receptor has a second subunit and is part of a translocation complex in the endoplasmic reticulum as probed by bifunctional reagents, J. Cell Biol., 111, 2283, 10.1083/jcb.111.6.2283 · DOI
- Görlich, 1992, A mammalian homolog of SEC61p and SECYp is associated with ribosomes and nascent polypeptides during translocation, Cell, 71, 489, 10.1016/0092-8674(92)90517-G · DOI
- Grimm, 2015, A general method to improve fluorophores for live-cell and single-molecule microscopy, Nat. Methods, 12, 244, 10.1038/nmeth.3256 · DOI
- Grünwald, 2008, Probing intranuclear environments at the single-molecule level, Biophys. J., 94, 2847, 10.1529/biophysj.107.115014 · DOI
- Gueroussov, 2010, Analysis of mRNA nuclear export kinetics in mammalian cells by microinjection, J. Vis. Exp., 46, 2387
- Halstead, 2015, Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals, Science, 347, 1367, 10.1126/science.aaa3380 · DOI
- Hollien, 2006, Decay of endoplasmic reticulum-localized mRNAs during the unfolded protein response, Science, 313, 104, 10.1126/science.1129631 · DOI
- Jagannathan, 2011, Analyzing mRNA localization to the endoplasmic reticulum via cell fractionation, Vol. 714, 301
- Jagannathan, 2014, De novo translation initiation on membrane-bound ribosomes as a mechanism for localization of cytosolic protein mRNAs to the endoplasmic reticulum, RNA, 20, 1489, 10.1261/rna.045526.114 · DOI · Paper page
- Jan, 2014, Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling, Science, 346, 1257521, 10.1126/science.1257521 · DOI
- Jan, 2015, Response to comment on “Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling.”, Science, 348, 1217, 10.1126/science.aaa8299 · DOI
- Johannessen, 1995, Changes in distribution of actin mRNA in different polysome fractions following stimulation of MPC-11 cells, Mol. Cell. Biochem., 142, 107, 10.1007/BF00928931 · DOI
- Kanda, 2016, Autonomous translational pausing is required for XBP1u mRNA recruitment to the ER via the SRP pathway, Proc. Natl. Acad. Sci. USA, 113, E5886, 10.1073/pnas.1604435113 · DOI
- Kues, 2001, High intranuclear mobility and dynamic clustering of the splicing factor U1 snRNP observed by single particle tracking, Proc. Natl. Acad. Sci. USA, 98, 12021, 10.1073/pnas.211250098 · DOI
- Lerner, 2003, Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes, RNA, 9, 1123, 10.1261/rna.5610403 · DOI
- Liao, 2011, An RNA-zipcode-independent mechanism that localizes Dia1 mRNA to the perinuclear ER through interactions between Dia1 nascent peptide and Rho-GTP, J. Cell Sci., 124, 589, 10.1242/jcs.072421 · DOI · Paper page
- Lisé, 2009, Myosin-Va-interacting protein, RILPL2, controls cell shape and neuronal morphogenesis via Rac signaling, J. Cell Sci., 122, 3810, 10.1242/jcs.050344 · DOI
- Mahamid, 2016, Visualizing the molecular sociology at the HeLa cell nuclear periphery, Science, 351, 969, 10.1126/science.aad8857 · DOI
- Makarova, 2016, Intracellular and extracellular microRNA: an update on localization and biological role, Prog. Histochem. Cytochem., 51, 33, 10.1016/j.proghi.2016.06.001 · DOI
- Morisaki, 2016, Real-time quantification of single RNA translation dynamics in living cells, Science, 352, 1425, 10.1126/science.aaf0899 · DOI
- Nicchitta, 2005, Pathways for compartmentalizing protein synthesis in eukaryotic cells: the template-partitioning model, Biochem. Cell Biol., 83, 687, 10.1139/o05-147 · DOI
- Nixon-Abell, 2016, Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER, Science, 354, aaf3928, 10.1126/science.aaf3928 · DOI
- Osborne, 2005, Protein translocation by the Sec61/SecY channel, Annu. Rev. Cell Dev. Biol., 21, 529, 10.1146/annurev.cellbio.21.012704.133214 · DOI
- Pavitt, 2012, New insights into translational regulation in the endoplasmic reticulum unfolded protein response, Cold Spring Harb. Perspect. Biol., 4, a012278, 10.1101/cshperspect.a012278 · DOI
- Pichon, 2016, Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells, J. Cell Biol., 214, 769, 10.1083/jcb.201605024 · DOI
- Plumb, 2015, A functional link between the co-translational protein translocation pathway and the UPR, eLife, 4, e07426, 10.7554/eLife.07426 · DOI
- Potter, 2000, Regulation of ribosome detachment from the mammalian endoplasmic reticulum membrane, J. Biol. Chem., 275, 33828, 10.1074/jbc.M005294200 · DOI
- Potter, 2002, Endoplasmic reticulum-bound ribosomes reside in stable association with the translocon following termination of protein synthesis, J. Biol. Chem., 277, 23314, 10.1074/jbc.M202559200 · DOI
- Pyhtila, 2008, Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum, RNA, 14, 445, 10.1261/rna.721108 · DOI
- Reid, 2015, Diversity and selectivity in mRNA translation on the endoplasmic reticulum, Nat. Rev. Mol. Cell Biol., 16, 221, 10.1038/nrm3958 · DOI
- Reid, 2015, Comment on “Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling”, Science, 348, 1217, 10.1126/science.aaa7257 · DOI
- Reid, 2014, The unfolded protein response triggers selective mRNA release from the endoplasmic reticulum, Cell, 158, 1362, 10.1016/j.cell.2014.08.012 · DOI
- Rolls, 1999, A visual screen of a GFP-fusion library identifies a new type of nuclear envelope membrane protein, J. Cell Biol., 146, 29, 10.1083/jcb.146.1.29 · DOI
- Sahoo, 2017, Nup358 binds to AGO proteins through its SUMO-interacting motifs and promotes the association of target mRNA with miRISC, EMBO Rep., 18, 241, 10.15252/embr.201642386 · DOI
- Seiser, 2000, The fate of membrane-bound ribosomes following the termination of protein synthesis, J. Biol. Chem., 275, 33820, 10.1074/jbc.M004462200 · DOI
- Sommer, C., Strähle, C., Köthe, U., and Hamprecht, F.A. (2011). ilastik: interactive learning and segmentation toolkit. In Proceedings of the Eighth IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, pp. 230–233. · DOI
- Stalder, 2013, The rough endoplasmatic reticulum is a central nucleation site of siRNA-mediated RNA silencing, EMBO J., 32, 1115, 10.1038/emboj.2013.52 · DOI
- Staudacher, 2015, Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum, Nucleic Acids Res., 43, 3219, 10.1093/nar/gkv167 · DOI
- Stephens, 2005, Stable ribosome binding to the endoplasmic reticulum enables compartment-specific regulation of mRNA translation, Mol. Biol. Cell, 16, 5819, 10.1091/mbc.e05-07-0685 · DOI
- Tanenbaum, 2014, A protein-tagging system for signal amplification in gene expression and fluorescence imaging, Cell, 159, 635, 10.1016/j.cell.2014.09.039 · DOI
- Tannous, 2005, Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo, Mol. Ther., 11, 435, 10.1016/j.ymthe.2004.10.016 · DOI
- Terasaki, 2000, Dynamics of the endoplasmic reticulum and golgi apparatus during early sea urchin development, Mol. Biol. Cell, 11, 897, 10.1091/mbc.11.3.897 · DOI
- Tichon, 2016, A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells, Nat. Commun., 7, 12209, 10.1038/ncomms12209 · DOI
- Valm, 2017, Applying systems-level spectral imaging and analysis to reveal the organelle interactome, Nature, 546, 162, 10.1038/nature22369 · DOI · Paper page
- Voigt, 2018, Detection of the first round of translation: the TRICK assay, Methods Mol. Biol., 1649, 373, 10.1007/978-1-4939-7213-5_25 · DOI
- Walter, 1981, Translocation of proteins across the endoplasmic reticulum. I. Signal recognition protein (SRP) binds to in-vitro-assembled polysomes synthesizing secretory protein, J. Cell Biol., 91, 545, 10.1083/jcb.91.2.545 · DOI
- Wang, 2016, Real-time imaging of translation on single mRNA transcripts in live cells, Cell, 165, 990, 10.1016/j.cell.2016.04.040 · DOI
- Weidenfeld, 2009, Inducible expression of coding and inhibitory RNAs from retargetable genomic loci, Nucleic Acids Res., 37, e50, 10.1093/nar/gkp108 · DOI
- Wu, 2015, Synonymous modification results in high-fidelity gene expression of repetitive protein and nucleotide sequences, Genes Dev., 29, 876, 10.1101/gad.259358.115 · DOI
- Wu, 2016, Translation dynamics of single mRNAs in live cells and neurons, Science, 352, 1430, 10.1126/science.aaf1084 · DOI
- Yan, 2016, Dynamics of translation of single mRNA molecules in vivo, Cell, 165, 976, 10.1016/j.cell.2016.04.034 · DOI
- Zhou, 2000, The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans, Nature, 407, 401, 10.1038/35030160 · DOI
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Koppers, M., Özkan, N., Nguyen, H. H., Jurriens, D., McCaughey, J., Nguyen, D. T. M., Li, C. H., Stucchi, R., Altelaar, M., MacGillavry, H. D., et al. (2024) · Developmental Cell · doi:10.1016/j.devcel.2024.05.005 · Cited by 44
Metadata
- Authors
- Voigt, F., Zhang, H., Cui, X. A., Triebold, D., Liu, A. X., Eglinger, J., Lee, E. S., Chao, J. A., & Palazzo, A. F.
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2017-12
- Volume
- 21
- Issue
- 13
- Pages
- 3740-3753
- ISSN
- 2211-1247
- Cited by
- 119
- References
- 4
- Language
- en
- Licence
- Funders
- National Science and Engineering Research Council of Canada (NSERC)
- NSERC (FN 492860)
- Novartis Research Foundation
- Swiss National Science Foundation (SNF) (31003A_156477)
- SNF-NCCR RNA & Disease
- SNF Marie Heim-Vögtlin
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